using DocumentFormat.OpenXml.EMMA;
using FellowOakDicom;
using FellowOakDicom.Imaging;
using FellowOakDicom.Imaging.Render;
using FellowOakDicom.IO.Buffer;
using IRaCIS.Core.Application.Helper;
using MassTransit;
using Microsoft.AspNetCore.Authorization;
using Microsoft.AspNetCore.Hosting;
using Microsoft.AspNetCore.Mvc;
using SharpCompress.Common;
using System;
using System.Collections.Generic;
using System.Linq;
using System.Text;
using System.Text.RegularExpressions;
using System.Threading.Tasks;
using System.Web;
using static IRaCIS.Core.Domain.Share.StaticData;
namespace IRaCIS.Core.Application.Service
{
///
/// 项目影像后台下载,不打包
///
///
///
[ApiExplorerSettings(GroupName = "Common")]
public class TrialImageDownloadService(IRepository _trialRepository, IOSSService _oSSService, IWebHostEnvironment _hostEnvironment) : BaseService
{
///
/// 后端api swagger 下载项目影像
///
///
///
[HttpPost]
[AllowAnonymous]
public async Task DownloadTrialImage(Guid trialId)
{
//var subjectCodeList = new List() { "05002", "07006", "07026" };
var downloadInfo = _trialRepository.Where(t => t.Id == trialId).Select(t => new
{
t.ResearchProgramNo,
VisitList = t.SubjectVisitList
//.Where(t=>subjectCodeList.Contains(t.Subject.Code))
.Select(sv => new
{
TrialSiteCode = sv.TrialSite.TrialSiteCode,
SubjectCode = sv.Subject.Code,
VisitName = sv.VisitName,
StudyList = sv.StudyList.Select(u => new
{
u.PatientId,
u.StudyTime,
u.StudyCode,
SeriesList = u.SeriesList.Where(t => t.IsReading).Select(z => new
{
z.Modality,
InstancePathList = z.DicomInstanceList.Where(t => t.IsReading).Select(k => new
{
k.Path
}).ToList()
})
}).ToList(),
NoneDicomStudyList = sv.NoneDicomStudyList.Where(t => t.IsReading).Select(nd => new
{
nd.Modality,
nd.StudyCode,
nd.ImageDate,
FileList = nd.NoneDicomFileList.Where(t => t.IsReading).Select(file => new
{
file.FileName,
file.Path,
file.FileType
}).ToList()
}).ToList()
}).ToList()
}).FirstOrDefault();
var count = downloadInfo.VisitList.SelectMany(t => t.NoneDicomStudyList).SelectMany(t => t.FileList).Count();
var count2 = downloadInfo.VisitList.SelectMany(t => t.StudyList).SelectMany(t => t.SeriesList).SelectMany(t => t.InstancePathList).Count();
Console.WriteLine($"下载总数量:{count}+{count2}={count + count2}");
if (downloadInfo != null)
{
var downloadJobs = new List>();
var rootFolder = @"E:\DownloadImage";
//var rootFolder = FileStoreHelper.GetDonwnloadImageFolder(_hostEnvironment);
// 获取无效字符(系统定义的)
string invalidChars = new string(Path.GetInvalidFileNameChars()) + new string(Path.GetInvalidPathChars());
// 用正则表达式替换所有非法字符为下划线或空字符
string pattern = $"[{Regex.Escape(invalidChars)}]";
var regexNo = Regex.Replace(downloadInfo.ResearchProgramNo, pattern, "_");
// 创建一个临时文件夹来存放文件
string trialFolderPath = Path.Combine(rootFolder, $"{regexNo}_{NewId.NextGuid()}");
Directory.CreateDirectory(trialFolderPath);
foreach (var visitItem in downloadInfo.VisitList)
{
if (visitItem.StudyList.Count() == 0 && visitItem.NoneDicomStudyList.Count() == 0)
{
continue;
}
#region 处理 中心,受试者dicom non-dicom 文件夹层级
var siteFolderPath = Path.Combine(trialFolderPath, visitItem.TrialSiteCode);
if (!Directory.Exists(siteFolderPath))
{
Directory.CreateDirectory(siteFolderPath);
}
#endregion
foreach (var studyInfo in visitItem.StudyList)
{
// 遍历 Series
foreach (var seriesInfo in studyInfo.SeriesList)
{
string studyDicomFolderPath = Path.Combine(siteFolderPath, $"{visitItem.SubjectCode}_{visitItem.VisitName}_DICOM", $"{studyInfo.StudyCode}_{studyInfo.StudyTime?.ToString("yyyy-MM-dd")}_{seriesInfo.Modality}");
// 创建 影像 文件夹
Directory.CreateDirectory(studyDicomFolderPath);
// 遍历 InstancePathList
foreach (var instanceInfo in seriesInfo.InstancePathList)
{
// 复制文件到相应的文件夹
string destinationPath = Path.Combine(studyDicomFolderPath, Path.GetFileName(instanceInfo.Path));
//加入到下载任务里
downloadJobs.Add(() => _oSSService.DownLoadFromOSSAsync(instanceInfo.Path, destinationPath));
//下载到当前目录
//await _oSSService.DownLoadFromOSSAsync(instanceInfo.Path, destinationPath);
}
}
}
foreach (var noneDicomStudy in visitItem.NoneDicomStudyList)
{
string studyNoneDicomFolderPath = Path.Combine(siteFolderPath, $"{visitItem.SubjectCode}_{visitItem.VisitName}_Non-DICOM", $"{noneDicomStudy.StudyCode}_{noneDicomStudy.ImageDate.ToString("yyyy-MM-dd")}_{noneDicomStudy.Modality}");
Directory.CreateDirectory(studyNoneDicomFolderPath);
foreach (var file in noneDicomStudy.FileList)
{
string destinationPath = Path.Combine(studyNoneDicomFolderPath, Path.GetFileName(file.FileName));
//加入到下载任务里
downloadJobs.Add(() => _oSSService.DownLoadFromOSSAsync(HttpUtility.UrlDecode(file.Path), destinationPath));
//下载到当前目录
//await _oSSService.DownLoadFromOSSAsync(HttpUtility.UrlDecode(file.Path), destinationPath);
}
}
}
#region 异步方式处理
int totalCount = downloadJobs.Count;
int downloadedCount = 0;
foreach (var job in downloadJobs)
{
try
{
await job();
}
catch (Exception ex)
{
Console.WriteLine($"下载失败: {ex.Message}");
}
downloadedCount++;
// 每处理50个,输出一次进度(或最后一个时也输出)
if (downloadedCount % 50 == 0 || downloadedCount == totalCount)
{
Console.WriteLine($"已下载 {downloadedCount} / {totalCount} 个文件,完成 {(downloadedCount * 100.0 / totalCount):F2}%");
}
}
#endregion
#region 多线程测试
//const int batchSize = 15;
//int totalCount = downloadJobs.Count;
//int downloadedCount = 0;
//for (int i = 0; i < downloadJobs.Count; i += batchSize)
//{
// var batch = downloadJobs.Skip(i).Take(batchSize).Select(job => job());
// await Task.WhenAll(batch);
// downloadedCount += batch.Count();
// Console.WriteLine($"已下载 {downloadedCount} / {totalCount} 个文件,完成 {(downloadedCount * 100.0 / totalCount):F2}%");
//}
#endregion
}
return ResponseOutput.Ok();
}
///
/// 下载影像 维护dir信息 并回传到OSS
///
///
///
[HttpGet]
[AllowAnonymous]
public async Task DownloadAndUploadTrialData(Guid trialId, [FromServices] IRepository _instanceRepository,
[FromServices] IRepository _studyRepository,
[FromServices] IRepository _seriesRepository)
{
var list = await _instanceRepository.Where(t => t.TrialId == trialId && t.SubjectVisitId == Guid.Parse("01000000-0a00-0242-bd20-08dcce543ded" ) && t.DicomStudy.ModalityForEdit == "IVUS")
.Select(t => new { t.SeriesId, t.StudyId, t.Id, t.Path }).ToListAsync();
int totalCount = list.Count;
int dealCount = 0;
foreach (var item in list)
{
var stream = await _oSSService.GetStreamFromOSSAsync(item.Path);
var dicomFile = DicomFile.Open(stream);
// 获取 Pixel Data 标签
var pixelData = DicomPixelData.Create(dicomFile.Dataset);
//获取像素是否为封装形式
var syntax = dicomFile.Dataset.InternalTransferSyntax;
//对于封装像素的文件做转换
if (syntax.IsEncapsulated)
{
// 创建一个新的片段序列
var newFragments = new DicomOtherByteFragment(DicomTag.PixelData);
// 获取每帧数据并封装为单独的片段
for (int n = 0; n < pixelData.NumberOfFrames; n++)
{
var frameData = pixelData.GetFrame(n);
newFragments.Fragments.Add(new MemoryByteBuffer(frameData.Data));
}
// 替换原有的片段序列
dicomFile.Dataset.AddOrUpdate(newFragments);
}
#region 获取dir信息 维护数据库三个表数据
var dirInfo = DicomDIRHelper.ReadDicomDIRInfo(dicomFile);
await _instanceRepository.BatchUpdateNoTrackingAsync(t => t.Id == item.Id,
u => new DicomInstance()
{
IsEncapsulated= syntax.IsEncapsulated,
TransferSytaxUID = dirInfo.TransferSytaxUID,
SOPClassUID = dirInfo.SOPClassUID,
MediaStorageSOPClassUID = dirInfo.MediaStorageSOPClassUID,
MediaStorageSOPInstanceUID = dirInfo.MediaStorageSOPInstanceUID
}, false);
await _seriesRepository.BatchUpdateNoTrackingAsync(t => t.Id == item.SeriesId,
u => new DicomSeries()
{
DicomSeriesDate = dirInfo.DicomSeriesDate,
DicomSeriesTime = dirInfo.DicomSeriesTime,
}, false);
await _studyRepository.BatchUpdateNoTrackingAsync(t => t.Id == item.StudyId,
u => new DicomStudy()
{
DicomStudyDate = dirInfo.DicomStudyDate,
DicomStudyTime = dirInfo.DicomStudyTime
}, false);
#endregion
//保存到内存流
using var memoryStream = new MemoryStream();
dicomFile.Save(memoryStream);
memoryStream.Position = 0;
//获取原始目录 和文件名
var folder = item.Path.Substring(0, item.Path.LastIndexOf('/')).TrimStart('/');
var fileName = Path.GetFileName(item.Path);
//dicomFile.Save($"download_{Guid.NewGuid()}");
await _oSSService.UploadToOSSAsync(memoryStream, folder, fileName, false);
dealCount++;
Console.WriteLine($"{DateTime.Now}已下载 {dealCount} / {totalCount} 个文件,完成 {(dealCount * 100.0 / totalCount):F2}%");
}
return ResponseOutput.Ok();
}
}
}