865 lines
37 KiB
C#
865 lines
37 KiB
C#
using IRaCIS.Core.Application.Contracts;
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using IRaCIS.Core.Domain.Share;
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using Microsoft.AspNetCore.Mvc;
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using Microsoft.AspNetCore.Authorization;
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using IRaCIS.Core.Application.Services;
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using EasyCaching.Core;
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using System.Linq.Expressions;
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using IRaCIS.Core.Application.Helper;
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using IRaCIS.Core.Infrastructure;
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using DocumentFormat.OpenXml.Presentation;
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using IRaCIS.Core.Domain.Models;
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using IRaCIS.Core.Application.Filter;
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using IRaCIS.Core.Application.MediatR.Handlers;
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using Microsoft.AspNetCore.Http;
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using Newtonsoft.Json;
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using System.Threading;
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using Nito.AsyncEx;
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namespace IRaCIS.Core.Application.Service.ImageAndDoc
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{
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[ApiExplorerSettings(GroupName = "Image")]
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public class StudyService : BaseService, IStudyService
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{
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private static object lockObj = new object();
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private static readonly AsyncLock _mutex = new AsyncLock();
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private static readonly AsyncLock _mutex2 = new AsyncLock();
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private readonly IEasyCachingProvider _provider;
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private readonly IRepository<SubjectVisit> _subjectVisitRepository;
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private readonly IRepository<DicomInstance> _dicomInstanceRepository;
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private readonly IRepository<DicomSeries> _dicomSeriesRepository;
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private readonly IRepository<DicomStudy> _dicomstudyRepository;
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private readonly IRepository<Dictionary> _dictionaryRepository;
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private readonly IRepository<StudyMonitor> _studyMonitorRepository;
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public StudyService(IEasyCachingProvider provider
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, IRepository<SubjectVisit> subjectVisitRepository,
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IRepository<DicomInstance> dicomInstanceRepository,
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IRepository<DicomSeries> dicomSeriesRepository, IRepository<DicomStudy> dicomstudyRepository, IRepository<Dictionary> dictionaryRepository, IRepository<StudyMonitor> studyMonitorRepository)
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{
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_provider = provider;
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_subjectVisitRepository = subjectVisitRepository;
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_dicomInstanceRepository = dicomInstanceRepository;
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_dicomSeriesRepository = dicomSeriesRepository;
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_dicomstudyRepository = dicomstudyRepository;
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_dictionaryRepository = dictionaryRepository;
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_studyMonitorRepository = studyMonitorRepository;
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}
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private void SpecialArchiveStudyDeal(DicomStudy study)
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{
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#region 特殊逻辑
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if (study.PatientBirthDate.Length == 8)
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{
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study.PatientBirthDate = $"{study.PatientBirthDate[0]}{study.PatientBirthDate[1]}{study.PatientBirthDate[2]}{study.PatientBirthDate[3]}-{study.PatientBirthDate[4]}{study.PatientBirthDate[5]}-{study.PatientBirthDate[6]}{study.PatientBirthDate[7]}";
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}
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var dicModalityList = _dictionaryRepository.Where(t => t.Code == "Modality").SelectMany(t => t.ChildList.Select(c => c.Value)).ToList();
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var modality = study.Modalities;
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var modalityForEdit = dicModalityList.Contains(modality) ? modality : String.Empty;
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if (modality == "MR")
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{
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modalityForEdit = "MRI";
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}
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if (modality == "PT")
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{
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modalityForEdit = "PET";
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}
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if (modality == "PT、CT")
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{
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modalityForEdit = "PET-CT";
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}
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study.ModalityForEdit = modalityForEdit;
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#endregion
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}
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[TypeFilter(typeof(TrialResourceFilter), Arguments = new object[] { "AfterStopCannNotOpt" })]
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public async Task<IResponseOutput> PreArchiveDicomStudy(PreArchiveDicomStudyCommand preArchiveStudyCommand)
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{
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//lock (lockObj)
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//{
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// if (_provider.Exists($"StudyUid_{preArchiveStudyCommand.TrialId}_{preArchiveStudyCommand.StudyInstanceUid}"))
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// {
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// //---当前已有人正在上传和归档该检查!
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// return ResponseOutput.NotOk(StaticData.International("UploadDownLoad_ArchiveInProgress"));
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// }
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// else
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// {
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// _provider.Set($"StudyUid_{preArchiveStudyCommand.TrialId}_{preArchiveStudyCommand.StudyInstanceUid}", _userInfo.Id, TimeSpan.FromSeconds(30));
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// }
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//}
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var studyMonitor = new StudyMonitor()
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{
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TrialId = preArchiveStudyCommand.TrialId,
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SiteId = preArchiveStudyCommand.SiteId,
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SubjectId = preArchiveStudyCommand.SubjectId,
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SubjectVisitId = preArchiveStudyCommand.SubjectVisitId,
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IsSuccess = false,
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UploadStartTime = DateTime.Now,
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IsDicom = true,
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IP = _userInfo.IP,
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IsDicomReUpload = preArchiveStudyCommand.IsDicomReUpload,
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FileSize = preArchiveStudyCommand.FileSize,
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FileCount = preArchiveStudyCommand.FileCount,
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};
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var addEntity = await _studyMonitorRepository.AddAsync(studyMonitor, true);
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return ResponseOutput.Ok(addEntity.Id);
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}
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[HttpGet]
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public IResponseOutput DicomUploadInProgress(Guid trialId, string studyInstanceUid)
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{
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_provider.Set($"StudyUid_{trialId}_{studyInstanceUid}", _userInfo.Id, TimeSpan.FromSeconds(30));
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return ResponseOutput.Ok();
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}
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[TypeFilter(typeof(TrialResourceFilter), Arguments = new object[] { "AfterStopCannNotOpt" })]
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public async Task<IResponseOutput> AddOrUpdateArchiveStudy(NewArchiveStudyCommand incommand)
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{
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try
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{
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var trialId = incommand.TrialId;
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var studyMonitor = await _studyMonitorRepository.FirstOrDefaultAsync(t => t.Id == incommand.StudyMonitorId);
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studyMonitor.UploadFinishedTime = DateTime.Now;
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studyMonitor.ArchiveFinishedTime = DateTime.Now;
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studyMonitor.FailedFileCount = incommand.FailedFileCount;
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studyMonitor.IsSuccess = true;
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//上传
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if (studyMonitor.IsDicomReUpload == false)
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{
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var study = _mapper.Map<DicomStudy>(incommand.Study);
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using (await _mutex.LockAsync())
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{
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//查询数据库获取最大的Code 没有记录则为0
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var dbStudyCodeIntMax = _dicomstudyRepository.Where(s => s.TrialId == trialId).Select(t => t.Code).DefaultIfEmpty().Max();
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//获取缓存中的值 并发的时候，需要记录，已被占用的值 这样其他线程在此占用的最大的值上递增
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var cacheMaxCodeInt = _provider.Get<int>($"{trialId}_{StaticData.CacheKey.StudyMaxCode}").Value;
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int currentNextCodeInt = cacheMaxCodeInt > dbStudyCodeIntMax ? cacheMaxCodeInt + 1 : dbStudyCodeIntMax + 1;
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study.Code = currentNextCodeInt;
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study.StudyCode = AppSettings.GetCodeStr(currentNextCodeInt, nameof(DicomStudy));
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_provider.Set<int>($"{trialId}_{StaticData.CacheKey.StudyMaxCode}", study.Code, TimeSpan.FromMinutes(30));
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}
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study.Id = IdentifierHelper.CreateGuid(incommand.Study.StudyInstanceUid, incommand.TrialId.ToString());
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study.TrialId = incommand.TrialId;
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study.SiteId = incommand.SiteId;
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study.SubjectId = incommand.SubjectId;
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study.SubjectVisitId = incommand.SubjectVisitId;
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//特殊处理逻辑
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study.Modalities = string.Join("、", incommand.Study.SeriesList.Select(t => t.Modality).Distinct());
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SpecialArchiveStudyDeal(study);
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await _dicomstudyRepository.AddAsync(study);
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studyMonitor.StudyId = study.Id;
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studyMonitor.StudyCode = study.StudyCode;
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foreach (var seriesItem in incommand.Study.SeriesList)
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{
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var series = _mapper.Map<DicomSeries>(seriesItem);
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series.Id = IdentifierHelper.CreateGuid(seriesItem.StudyInstanceUid, seriesItem.SeriesInstanceUid, incommand.TrialId.ToString());
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series.StudyId = study.Id;
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series.TrialId = incommand.TrialId;
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series.SiteId = incommand.SiteId;
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series.SubjectId = incommand.SubjectId;
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series.SubjectVisitId = incommand.SubjectVisitId;
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await _dicomSeriesRepository.AddAsync(series);
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foreach (var instanceItem in seriesItem.InstanceList)
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{
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var isntance = _mapper.Map<DicomInstance>(instanceItem);
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isntance.StudyId = study.Id;
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isntance.SeriesId = series.Id;
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isntance.TrialId = incommand.TrialId;
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isntance.SiteId = incommand.SiteId;
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isntance.SubjectId = incommand.SubjectId;
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isntance.SubjectVisitId = incommand.SubjectVisitId;
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await _dicomInstanceRepository.AddAsync(isntance);
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}
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}
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}
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else
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{
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var studyId = IdentifierHelper.CreateGuid(incommand.Study.StudyInstanceUid, incommand.TrialId.ToString()); ;
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var study = await _dicomstudyRepository.FirstOrDefaultAsync(t => t.Id == studyId);
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//_mapper.Map(incommand.Study, study);
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//特殊处理逻辑
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study.Modalities = string.Join("、", incommand.Study.SeriesList.Select(t => t.Modality).Union(study.Modalities.Split("、", StringSplitOptions.RemoveEmptyEntries)).Distinct());
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SpecialArchiveStudyDeal(study);
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// 少了整个序列
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//某个序列下少了instance
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foreach (var seriesItem in incommand.Study.SeriesList)
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{
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var seriesId = IdentifierHelper.CreateGuid(seriesItem.StudyInstanceUid, seriesItem.SeriesInstanceUid, trialId.ToString());
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DicomSeries dicomSeries = await _dicomSeriesRepository.FirstOrDefaultAsync(t => t.Id == seriesId);
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//判断重复
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if (dicomSeries == null)
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{
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var series = _mapper.Map<DicomSeries>(seriesItem);
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series.Id = seriesId;
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series.StudyId = study.Id;
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series.TrialId = incommand.TrialId;
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series.SiteId = incommand.SiteId;
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series.SubjectId = incommand.SubjectId;
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series.SubjectVisitId = incommand.SubjectVisitId;
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dicomSeries = await _dicomSeriesRepository.AddAsync(series);
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//新的序列 那么 检查的序列数量+1
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study.SeriesCount += 1;
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}
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else
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{
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//该序列掉了instance
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dicomSeries.InstanceCount += seriesItem.InstanceList.Count;
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}
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foreach (var instanceItem in seriesItem.InstanceList)
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{
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var insntance = _mapper.Map<DicomInstance>(instanceItem);
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insntance.Id = IdentifierHelper.CreateGuid(insntance.StudyInstanceUid, insntance.SeriesInstanceUid, insntance.SopInstanceUid, trialId.ToString());
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insntance.StudyId = study.Id;
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insntance.SeriesId = dicomSeries.Id;
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insntance.TrialId = incommand.TrialId;
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insntance.SiteId = incommand.SiteId;
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insntance.SubjectId = incommand.SubjectId;
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insntance.SubjectVisitId = incommand.SubjectVisitId;
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await _dicomInstanceRepository.AddAsync(insntance);
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}
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// 不管是新的序列 还是 该序列 掉了Instance 重传的时候 检查的instance 数量都会增加
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study.InstanceCount += seriesItem.InstanceList.Count;
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}
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}
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using (await _mutex2.LockAsync())
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{
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await _dicomInstanceRepository.SaveChangesAsync();
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}
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}
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catch (Exception ex)
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{
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return ResponseOutput.NotOk(ex.Message);
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}
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finally
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{
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_provider.Remove($"StudyUid_{incommand.TrialId}_{incommand.Study.StudyInstanceUid}");
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}
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return ResponseOutput.Ok();
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}
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[HttpPost]
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public async Task<PageOutput<UnionStudyViewModel>> GetDicomAndNoneDicomStudyList(StudyQuery studyQuery)
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{
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var svExpression = QCCommon.GetDicomStudySubjectVisitFilter(studyQuery.VisitPlanArray);
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var dicomStudyQuery = _repository.Where<DicomStudy>(t => t.TrialId == studyQuery.TrialId)
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.WhereIf(_userInfo.UserTypeEnumInt == (int)UserTypeEnum.ClinicalResearchCoordinator || _userInfo.UserTypeEnumInt == (int)UserTypeEnum.CRA, t => t.TrialSite.CRCUserList.Any(t => t.UserId == _userInfo.Id))
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//.WhereIf(!string.IsNullOrEmpty(studyQuery.VisitPlanInfo), studyQuery.VisitPlanInfo.Contains('.') ? t => t.SubjectVisit.VisitNum.ToString().Contains(".") : t => t.SubjectVisit.VisitNum == decimal.Parse(studyQuery.VisitPlanInfo))
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.WhereIf(studyQuery.VisitPlanArray != null && studyQuery.VisitPlanArray?.Length > 0, svExpression)
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.WhereIf(!string.IsNullOrWhiteSpace(studyQuery.SubjectInfo), t => t.Subject.Code.Contains(studyQuery.SubjectInfo))
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.Select(t => new UnionStudyViewModel()
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{
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TrialId = t.TrialId,
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SiteId = t.SiteId,
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SubjectId = t.SubjectId,
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SubjectVisitId = t.SubjectVisitId,
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VisitName = t.SubjectVisit.VisitName,
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VisitNum = t.SubjectVisit.VisitNum,
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IsDicom = true,
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SubjectCode = t.Subject.Code,
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Id = t.Id,
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Bodypart = t.BodyPartExamined,
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Modalities = t.Modalities,
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Count = t.SeriesCount,
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StudyCode = t.StudyCode,
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//DicomStudyCode = t.StudyCode,
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//NoneDicomCode = 0,
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StudyTime = t.StudyTime,
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TrialSiteAliasName = t.TrialSite.TrialSiteAliasName,
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TrialSiteCode = t.TrialSite.TrialSiteCode,
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Uploader = t.Uploader.UserName,
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UploadTime = t.CreateTime
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});
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//.ProjectTo<UnionStudyViewDodel>(_mapper.ConfigurationProvider);
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var svExpression2 = QCCommon.GetNoneDicomStudySubjectVisitFilter(studyQuery.VisitPlanArray);
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var nodeDicomStudyQuery = _repository.Where<NoneDicomStudy>(t => t.TrialId == studyQuery.TrialId)
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.WhereIf(_userInfo.UserTypeEnumInt == (int)UserTypeEnum.ClinicalResearchCoordinator || _userInfo.UserTypeEnumInt == (int)UserTypeEnum.CRA, t => t.TrialSite.CRCUserList.Any(t => t.UserId == _userInfo.Id))
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//.WhereIf(!string.IsNullOrEmpty(studyQuery.VisitPlanInfo), studyQuery.VisitPlanInfo.Contains('.') ? t => t.SubjectVisit.VisitNum.ToString().Contains(".") : t => t.SubjectVisit.VisitNum == decimal.Parse(studyQuery.VisitPlanInfo))
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.WhereIf(studyQuery.VisitPlanArray != null && studyQuery.VisitPlanArray?.Length > 0, svExpression2)
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.WhereIf(!string.IsNullOrWhiteSpace(studyQuery.SubjectInfo), t => t.Subject.Code.Contains(studyQuery.SubjectInfo))
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.Select(t => new UnionStudyViewModel()
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{
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TrialId = t.TrialId,
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SiteId = t.SiteId,
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SubjectId = t.SubjectId,
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SubjectVisitId = t.SubjectVisitId,
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VisitName = t.SubjectVisit.VisitName,
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VisitNum = t.SubjectVisit.VisitNum,
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IsDicom = false,
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SubjectCode = t.Subject.Code,
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Id = t.Id,
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Bodypart = t.BodyPart,
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Modalities = t.Modality,
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Count = t.NoneDicomFileList.Count(),
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StudyCode = t.StudyCode,
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//NoneDicomCode = t.Code,
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//DicomStudyCode = string.Empty,
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StudyTime = t.ImageDate,
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TrialSiteAliasName = t.TrialSite.TrialSiteAliasName,
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TrialSiteCode = t.TrialSite.TrialSiteCode,
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Uploader = t.CreateUser.UserName,
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UploadTime = t.CreateTime
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});
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//.ProjectTo<UnionStudyViewDodel>(_mapper.ConfigurationProvider);
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var unionQuery = dicomStudyQuery.Union(nodeDicomStudyQuery)
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.WhereIf(studyQuery.SubjectId != null, t => t.SubjectId == studyQuery.SubjectId)
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.WhereIf(studyQuery.SubjectVisitId != null, t => t.SubjectId == studyQuery.SubjectVisitId)
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.WhereIf(studyQuery.SiteId != null, t => t.SiteId == studyQuery.SiteId);
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return await unionQuery.ToPagedListAsync(studyQuery.PageIndex, studyQuery.PageSize, studyQuery.SortField, studyQuery.Asc);
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}
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[HttpPost]
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public async Task<PageOutput<UnionStudyMonitorModel>> GetDicomAndNoneDicomStudyMonitorList(StudyQuery studyQuery)
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{
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var svExpression = QCCommon.GetStudyMonitorSubjectVisitFilter(studyQuery.VisitPlanArray);
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var StudyMonitorQuery = _repository.Where<StudyMonitor>(t => t.TrialId == studyQuery.TrialId, ignoreQueryFilters: true)
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.WhereIf(_userInfo.UserTypeEnumInt == (int)UserTypeEnum.ClinicalResearchCoordinator || _userInfo.UserTypeEnumInt == (int)UserTypeEnum.CRA, t => t.TrialSite.CRCUserList.Any(t => t.UserId == _userInfo.Id))
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//.WhereIf(!string.IsNullOrEmpty(studyQuery.VisitPlanInfo), studyQuery.VisitPlanInfo.Contains('.') ? t => t.SubjectVisit.VisitNum.ToString().Contains(".") : t => t.SubjectVisit.VisitNum == decimal.Parse(studyQuery.VisitPlanInfo))
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.WhereIf(studyQuery.VisitPlanArray != null && studyQuery.VisitPlanArray?.Length > 0, svExpression)
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.WhereIf(!string.IsNullOrWhiteSpace(studyQuery.SubjectInfo), t => t.Subject.Code.Contains(studyQuery.SubjectInfo))
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.WhereIf(studyQuery.SubjectId != null, t => t.SubjectId == studyQuery.SubjectId)
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.WhereIf(studyQuery.SubjectVisitId != null, t => t.SubjectId == studyQuery.SubjectVisitId)
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.WhereIf(studyQuery.SiteId != null, t => t.SiteId == studyQuery.SiteId)
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.Select(t => new UnionStudyMonitorModel()
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{
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TrialId = t.TrialId,
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SiteId = t.SiteId,
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SubjectId = t.SubjectId,
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SubjectVisitId = t.SubjectVisitId,
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VisitName = t.SubjectVisit.VisitName,
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VisitNum = t.SubjectVisit.VisitNum,
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SubjectCode = t.Subject.Code,
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TrialSiteAliasName = t.TrialSite.TrialSiteAliasName,
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TrialSiteCode = t.TrialSite.TrialSiteCode,
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Uploader = t.Uploader.UserName,
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UploadTime = t.CreateTime,
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IsSuccess = t.IsSuccess,
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Note = t.Note,
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IP = t.IP,
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FileCount = t.FileCount,
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FileSize = t.FileSize,
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UploadFinishedTime = t.UploadFinishedTime,
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UploadStartTime = t.UploadStartTime,
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ArchiveFinishedTime = t.ArchiveFinishedTime,
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IsDicomReUpload = t.IsDicomReUpload,
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StudyId = t.Id,
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IsDicom = t.IsDicom,
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StudyCode = t.StudyCode
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});
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|
||
return await StudyMonitorQuery.ToPagedListAsync(studyQuery.PageIndex, studyQuery.PageSize, string.IsNullOrEmpty(studyQuery.SortField) ? "UploadTime" : studyQuery.SortField, studyQuery.Asc);
|
||
|
||
|
||
|
||
#region 冗余查询
|
||
//var dicomStudyQuery = _repository.Where<StudyMonitor>(t => t.TrialId == studyQuery.TrialId && t.IsDicom)
|
||
// .WhereIf(_userInfo.UserTypeEnumInt == (int)UserTypeEnum.ClinicalResearchCoordinator, t => t.TrialSite.CRCUserList.Any(t => t.UserId == _userInfo.Id))
|
||
// .WhereIf(!string.IsNullOrEmpty(studyQuery.VisitPlanInfo), studyQuery.VisitPlanInfo.Contains('.') ? t => t.SubjectVisit.VisitNum.ToString().Contains(".") : t => t.SubjectVisit.VisitNum == decimal.Parse(studyQuery.VisitPlanInfo))
|
||
// .WhereIf(!string.IsNullOrWhiteSpace(studyQuery.SubjectInfo), t => t.Subject.Code.Contains(studyQuery.SubjectInfo))
|
||
// .Select(t => new UnionStudyMonitorModel()
|
||
// {
|
||
// TrialId = t.TrialId,
|
||
// SiteId = t.SiteId,
|
||
// SubjectId = t.SubjectId,
|
||
// SubjectVisitId = t.SubjectVisitId,
|
||
// VisitName = t.SubjectVisit.VisitName,
|
||
// VisitNum = t.SubjectVisit.VisitNum,
|
||
|
||
|
||
|
||
// SubjectCode = t.Subject.Code,
|
||
|
||
|
||
// TrialSiteAliasName = t.TrialSite.TrialSiteAliasName,
|
||
|
||
// TrialSiteCode = t.TrialSite.TrialSiteCode,
|
||
|
||
// Uploader = t.Uploader.FullName,
|
||
|
||
// UploadTime = t.CreateTime,
|
||
|
||
|
||
// IP = t.IP,
|
||
// FileCount = t.FileCount,
|
||
// FileSize = t.FileSize,
|
||
// UploadFinishedTime = t.UploadFinishedTime,
|
||
// UploadStartTime = t.UploadStartTime,
|
||
|
||
// TotalMillisecondsInterval = t.TotalMillisecondsInterval,
|
||
|
||
// IsDicomReUpload = t.IsDicomReUpload,
|
||
// StudyId = t.Id,
|
||
// IsDicom = t.IsDicom,
|
||
|
||
// StudyCode = t.DicomStudy.StudyCode
|
||
// //DicomStudyCode = t.DicomStudy.StudyCode,
|
||
// //NoneDicomCode = 0,
|
||
|
||
// });
|
||
|
||
////.ProjectTo<UnionStudyViewDodel>(_mapper.ConfigurationProvider);
|
||
|
||
|
||
|
||
//var nodeDicomStudyQuery = _repository.Where<StudyMonitor>(t => t.TrialId == studyQuery.TrialId && t.IsDicom == false)
|
||
// .WhereIf(_userInfo.UserTypeEnumInt == (int)UserTypeEnum.ClinicalResearchCoordinator, t => t.TrialSite.CRCUserList.Any(t => t.UserId == _userInfo.Id))
|
||
// .WhereIf(!string.IsNullOrEmpty(studyQuery.VisitPlanInfo), studyQuery.VisitPlanInfo.Contains('.') ? t => t.SubjectVisit.VisitNum.ToString().Contains(".") : t => t.SubjectVisit.VisitNum == decimal.Parse(studyQuery.VisitPlanInfo))
|
||
// .WhereIf(!string.IsNullOrWhiteSpace(studyQuery.SubjectInfo), t => t.Subject.Code.Contains(studyQuery.SubjectInfo))
|
||
|
||
// .Select(t => new UnionStudyMonitorModel()
|
||
// {
|
||
|
||
// TrialId = t.TrialId,
|
||
// SiteId = t.SiteId,
|
||
// SubjectId = t.SubjectId,
|
||
// SubjectVisitId = t.SubjectVisitId,
|
||
// VisitName = t.SubjectVisit.VisitName,
|
||
// VisitNum = t.SubjectVisit.VisitNum,
|
||
// SubjectCode = t.Subject.Code,
|
||
// TrialSiteAliasName = t.TrialSite.TrialSiteAliasName,
|
||
// TrialSiteCode = t.TrialSite.TrialSiteCode,
|
||
// Uploader = t.Uploader.FullName,
|
||
// UploadTime = t.CreateTime,
|
||
|
||
// IP = t.IP,
|
||
// FileCount = t.FileCount,
|
||
// FileSize = t.FileSize,
|
||
// UploadFinishedTime = t.UploadFinishedTime,
|
||
// UploadStartTime = t.UploadStartTime,
|
||
|
||
// TotalMillisecondsInterval = t.TotalMillisecondsInterval,
|
||
|
||
// IsDicomReUpload = t.IsDicomReUpload,
|
||
// StudyId = t.Id,
|
||
// IsDicom = t.IsDicom,
|
||
|
||
// StudyCode = t.NoneDicomStudy.StudyCode
|
||
|
||
// //DicomStudyCode = string.Empty,
|
||
// //NoneDicomCode = t.NoneDicomStudy.Code,
|
||
|
||
// });
|
||
|
||
////.ProjectTo<UnionStudyViewDodel>(_mapper.ConfigurationProvider);
|
||
|
||
|
||
//var unionQuery = dicomStudyQuery.Union(nodeDicomStudyQuery)
|
||
// .WhereIf(studyQuery.SubjectId != null, t => t.SubjectId == studyQuery.SubjectId)
|
||
// .WhereIf(studyQuery.SubjectVisitId != null, t => t.SubjectId == studyQuery.SubjectVisitId)
|
||
// .WhereIf(studyQuery.SiteId != null, t => t.SiteId == studyQuery.SiteId);
|
||
|
||
//return await unionQuery.ToPagedListAsync(studyQuery.PageIndex, studyQuery.PageSize, string.IsNullOrEmpty(studyQuery.SortField) ? "UploadTime" : studyQuery.SortField, studyQuery.Asc);
|
||
|
||
#endregion
|
||
|
||
|
||
|
||
}
|
||
|
||
|
||
/// <summary> 指定资源Id，渲染Dicom检查的Jpeg预览图像 </summary>
|
||
/// <param name="studyId"> Dicom检查的Id </param>
|
||
[HttpGet("{studyId:guid}")]
|
||
public async Task<FileContentResult> Preview(Guid studyId)
|
||
{
|
||
string path = String.Empty;
|
||
|
||
path = (await _dicomInstanceRepository.Where(s => s.StudyId == studyId).Select(t => t.Path).FirstOrDefaultAsync()).IfNullThrowException();
|
||
|
||
//DicomInstance dicomInstance = await _repository.FirstOrDefaultAsync<DicomInstance>(s => s.StudyId == studyId);
|
||
|
||
//if (dicomInstance != null)
|
||
//{
|
||
// DicomStudy dicomStudy = await _repository.FirstOrDefaultAsync<DicomStudy>(s => s.Id == dicomInstance.StudyId);
|
||
// if (dicomStudy != null)
|
||
// {
|
||
// var( physicalPath ,relativePath )= FileStoreHelper.GetDicomInstanceFilePath(_hostEnvironment, dicomStudy.TrialId, dicomStudy.SiteId, dicomStudy.SubjectId, dicomStudy.SubjectVisitId, dicomStudy.Id, dicomInstance.Id);
|
||
|
||
// path = physicalPath;
|
||
// }
|
||
//}
|
||
|
||
using (var sw = ImageHelper.RenderPreviewJpeg(path))
|
||
{
|
||
var bytes = new byte[sw.Length];
|
||
sw.Read(bytes, 0, bytes.Length);
|
||
sw.Close();
|
||
return new FileContentResult(bytes, "image/jpeg");
|
||
}
|
||
}
|
||
|
||
|
||
/// <summary>
|
||
/// 获取某个检查的关联检查列表（该受试者在这个想项目下的所有检查）
|
||
/// 点击检查检查列表中的一个检查获取对应的序列列表（调用之前的接口：/series/list/，根据StudyId，获取访视的序列列表）
|
||
/// </summary>
|
||
/// <returns></returns>
|
||
[HttpGet("{subjectVisitId:guid}")]
|
||
[AllowAnonymous]
|
||
public IResponseOutput<List<RelationStudyDTO>> GetAllRelationStudyList(Guid subjectVisitId)
|
||
{
|
||
#region 废弃
|
||
//var studylist = _studyRepository.Where(u => u.SubjectVisitId == subjectVisitId && u.IsDeleted == false).Select(t => new { StudyId = t.Id, t.SubjectId, t.TrialId }).ToList();
|
||
//var subjectId = studylist.FirstOrDefault().SubjectId;
|
||
//var trialId = studylist.FirstOrDefault().TrialId;
|
||
//var studyIds = studylist.Select(t => t.StudyId).ToList();
|
||
|
||
|
||
//var query = from studyItem in _studyRepository.Where(u => u.SubjectId == subjectId
|
||
// && u.TrialId == trialId && u.IsDeleted == false &&
|
||
// !studyIds.Contains(u.Id)
|
||
// /* && u.Status != (int)StudyStatus.Abandon*/)
|
||
// join visitItem in _subjectVisitRepository.AsQueryable()
|
||
// on studyItem.SubjectVisitId equals visitItem.Id
|
||
// select new RelationStudyDTO
|
||
// {
|
||
// StudyId = studyItem.Id,
|
||
// StudyCode = studyItem.StudyCode,
|
||
// VisitName = visitItem.VisitName,
|
||
// Modalities = studyItem.Modalities,
|
||
// Description = studyItem.Description,
|
||
// SeriesCount = studyItem.SeriesCount
|
||
// };
|
||
#endregion
|
||
|
||
var studyInfo = _repository.Where<DicomStudy>(u => u.SubjectVisitId == subjectVisitId).Select(t => new { t.SubjectId, t.TrialId }).FirstOrDefault().IfNullThrowException();
|
||
|
||
var query = _repository.Where<DicomStudy>(t => t.SubjectVisitId != subjectVisitId && t.TrialId == studyInfo.TrialId && t.SubjectId == studyInfo.SubjectId)
|
||
.ProjectTo<RelationStudyDTO>(_mapper.ConfigurationProvider).ToList();
|
||
|
||
var list = query.OrderBy(u => u.VisitName).ThenBy(s => s.StudyCode).ToList();
|
||
|
||
return ResponseOutput.Ok(list);
|
||
}
|
||
|
||
|
||
/// <summary> 指定资源Id，获取Dicom检查信息 </summary>
|
||
/// <param name="studyId"> Dicom检查的Id </param>
|
||
[HttpGet, Route("{studyId:guid}")]
|
||
[AllowAnonymous]
|
||
public IResponseOutput<DicomStudyDTO> Item(Guid studyId)
|
||
{
|
||
return ResponseOutput.Ok(_mapper.Map<DicomStudyDTO>(_repository.Where<DicomStudy>().FirstOrDefault(s => s.Id == studyId)));
|
||
}
|
||
|
||
|
||
|
||
/// <summary>
|
||
/// 批量验证 检查是否可以上传 并告知原因
|
||
/// </summary>
|
||
[HttpPost]
|
||
public IResponseOutput<List<VerifyStudyUploadResult>> VerifyStudyAllowUpload(VerifyUploadOrReupload verifyInfo)
|
||
{
|
||
var trialInfo = _repository.Where<Trial>().FirstOrDefault(t => t.Id == verifyInfo.TrialId).IfNullThrowException();
|
||
|
||
var result = new List<VerifyStudyUploadResult>();
|
||
|
||
var visitList = _repository.Where<SubjectVisit>(t => t.SubjectId == verifyInfo.SubjectId).Select(t => new { t.VisitNum, t.EarliestScanDate, t.LatestScanDate, t.Id }).ToList();
|
||
|
||
|
||
verifyInfo.StudyInstanceUidList.ForEach(waitUploadItem =>
|
||
{
|
||
|
||
if (trialInfo.IsVerifyVisitImageDate)
|
||
{
|
||
|
||
//小于当前访视 最近的最晚拍片
|
||
var before = visitList.Where(u => u.VisitNum < verifyInfo.VisitNum).Max(k => k.LatestScanDate);
|
||
|
||
if (before != null && waitUploadItem.StudyDate != null && before > waitUploadItem.StudyDate)
|
||
{
|
||
|
||
// $"当前访视检查时间{waitUploadItem.StudyDate?.ToString("yyyy-MM-dd")}不能早于前序访视检查时间{before?.ToString("yyyy-MM-dd")}，请核对检查数据是否有误",
|
||
result.Add(new VerifyStudyUploadResult() { ErrorMesseage = _localizer["Study_VisitBeforePrevError", waitUploadItem.StudyDate?.ToString("yyyy-MM-dd"), before?.ToString("yyyy-MM-dd")], StudyInstanceUid = waitUploadItem.StudyInstanceUid });
|
||
return;
|
||
}
|
||
|
||
//大于当前访视 最近的最早拍片日期
|
||
var after = visitList.Where(u => u.VisitNum > verifyInfo.VisitNum).Min(k => k.EarliestScanDate);
|
||
|
||
if (after != null && waitUploadItem.StudyDate != null && after < waitUploadItem.StudyDate)
|
||
{
|
||
// $"当前访视检查时间{waitUploadItem.StudyDate?.ToString("yyyy-MM-dd")}不能晚于该访视之后的检查时间{after?.ToString("yyyy-MM-dd")}，请核对检查数据是否有误"
|
||
result.Add(new VerifyStudyUploadResult() { ErrorMesseage = _localizer["Study_VisitAfterSubseqError", waitUploadItem.StudyDate?.ToString("yyyy-MM-dd"), after?.ToString("yyyy-MM-dd")], StudyInstanceUid = waitUploadItem.StudyInstanceUid });
|
||
return;
|
||
}
|
||
}
|
||
|
||
var temp = VerifyStudyUpload(waitUploadItem.StudyInstanceUid, verifyInfo.TrialId, verifyInfo.SubjectVisitId, verifyInfo.SubjectId);
|
||
|
||
result.Add(temp);
|
||
});
|
||
|
||
|
||
// 写入dicom 固定的信息，以及组织路径的信息 以及匿名化的信息
|
||
var otherData = GetSaveToDicomInfo(verifyInfo.SubjectVisitId);
|
||
|
||
var systemAnonymizationList = _repository.Where<SystemAnonymization>(t => t.IsEnable).ToList();
|
||
|
||
return ResponseOutput.Ok<List<VerifyStudyUploadResult>>(result, new
|
||
{
|
||
DicomStoreInfo = otherData,
|
||
AnonymizeFixedList = systemAnonymizationList.Where(t => t.IsFixed).ToList(),
|
||
AnonymizeNotFixedList = systemAnonymizationList.Where(t => t.IsFixed == false).ToList()
|
||
});
|
||
}
|
||
|
||
|
||
private VerifyStudyUploadResult VerifyStudyUpload(string studyInstanceUid, Guid trialId, Guid currentSubjectVisitId, Guid SubjectId)
|
||
{
|
||
|
||
var result = new VerifyStudyUploadResult();
|
||
|
||
if (_provider.Exists($"StudyUid_{trialId}_{studyInstanceUid}"))
|
||
{
|
||
|
||
result.AllowUpload = false;
|
||
|
||
result.AllowReUpload = false;
|
||
result.StudyInstanceUid = studyInstanceUid;
|
||
//---当前有人正在上传归档该检查!
|
||
result.ErrorMesseage = _localizer["Study_UploadArchiving"];
|
||
|
||
return result;
|
||
}
|
||
|
||
if (_repository.Where<Subject>(t => t.Id == SubjectId).Select(t => t.Status).FirstOrDefault() == SubjectStatus.EndOfVisit)
|
||
{
|
||
result.AllowUpload = false;
|
||
|
||
result.AllowReUpload = false;
|
||
result.StudyInstanceUid = studyInstanceUid;
|
||
//---受试者访视结束，不允许上传!
|
||
result.ErrorMesseage = _localizer["Study_VisitEndedNotAllowed"];
|
||
|
||
return result;
|
||
}
|
||
|
||
Guid expectStudyId = IdentifierHelper.CreateGuid(studyInstanceUid.Trim(), trialId.ToString());
|
||
|
||
|
||
|
||
var verifyStudyInfo = _repository.Where<DicomStudy>(t => t.TrialId == trialId && t.Id == expectStudyId).ProjectTo<VerifyStudyDto>(_mapper.ConfigurationProvider).FirstOrDefault();
|
||
result.StudyInfo = verifyStudyInfo;
|
||
|
||
|
||
//数据库不存在该检查 允许上传
|
||
if (verifyStudyInfo == null)
|
||
{
|
||
result.AllowUpload = true;
|
||
}
|
||
//数据库该项目有该检查 看是否支持重传
|
||
else
|
||
{
|
||
//是同一个受试者 支持重传
|
||
if (verifyStudyInfo.SubjectId == SubjectId && verifyStudyInfo.SubjectVisitId == currentSubjectVisitId)
|
||
{
|
||
result.AllowReUpload = true;
|
||
|
||
result.UploadedSeriesList = _repository.Where<DicomSeries>(t => t.StudyId == verifyStudyInfo.Id).Select(t => new UploadedSeries()
|
||
{ SeriesId = t.Id, SeriesInstanceUid = t.SeriesInstanceUid, SOPInstanceUIDList = t.DicomInstanceList.Select(c => c.SopInstanceUid).ToList() }).ToList();
|
||
}
|
||
//不是同一个受试者
|
||
else
|
||
{
|
||
//有默认值，其实不用写，这里为了好理解
|
||
result.AllowUpload = false;
|
||
|
||
result.AllowReUpload = false;
|
||
|
||
//$"此处不可以上传。当前影像检查已经上传给受试者{verifyStudyInfo.SubjectCode}的{verifyStudyInfo.VisitName}"
|
||
result.ErrorMesseage = _localizer["Study_ImgAlreadyUploaded", verifyStudyInfo.SubjectCode, verifyStudyInfo.VisitName];
|
||
}
|
||
}
|
||
result.StudyInstanceUid = studyInstanceUid;
|
||
|
||
|
||
if (result.AllowReUpload || result.AllowUpload)
|
||
{
|
||
lock (lockObj)
|
||
{
|
||
_provider.Set($"StudyUid_{trialId}_{studyInstanceUid}", _userInfo.Id, TimeSpan.FromSeconds(30));
|
||
}
|
||
}
|
||
|
||
return result;
|
||
}
|
||
|
||
|
||
|
||
|
||
/// <summary>
|
||
/// 获取保存到Dicom文件中的信息
|
||
/// </summary>
|
||
/// <param name="subjectVisitId"></param>
|
||
/// <returns></returns>
|
||
public DicomTrialSiteSubjectInfo GetSaveToDicomInfo(Guid subjectVisitId)
|
||
{
|
||
//6表连接 subject trial trialSite sponsor subjectVisit site
|
||
var info = _subjectVisitRepository.Where(t => t.Id == subjectVisitId).ProjectTo<DicomTrialSiteSubjectInfo>(_mapper.ConfigurationProvider).FirstOrDefault().IfNullThrowException();
|
||
|
||
return info;
|
||
}
|
||
|
||
public (List<string> SeriesInstanceUid, List<string> SopInstanceUid) GetHasUploadSeriesAndInstance(Guid studyId)
|
||
{
|
||
var seriesInstanceUidList = _dicomSeriesRepository.Where(t => t.StudyId == studyId).Select(t => t.SeriesInstanceUid).ToList();
|
||
|
||
var sopInstanceUidList = _dicomInstanceRepository.Where(t => t.StudyId == studyId).Select(t => t.SopInstanceUid).ToList();
|
||
|
||
return (seriesInstanceUidList, sopInstanceUidList);
|
||
}
|
||
|
||
}
|
||
}
|