using IRaCIS.Core.Domain.Share; using IRaCIS.Core.Infrastructure; using Microsoft.AspNetCore.Hosting; using System.Text.RegularExpressions; namespace IRaCIS.Core.Application.Helper; public static class FileStoreHelper { //处理文件名 压缩包,或者目录类的 会带上相对路径 public static (string TrustedFileNameForFileStorage, string RealName) GetStoreFileName(string fileName,bool isChangeToPdfFormat=false) { //带目录层级,需要后端处理前端的路径 if (fileName.Contains("\\")) { fileName = fileName.Split("\\").Last(); } if (fileName.Contains("/")) { fileName = fileName.Split("/").Last(); } var matchResult = Regex.Match(fileName, @"[0-9a-fA-F]{8}(-[0-9a-fA-F]{4}){3}-[0-9a-fA-F]{12}"); //如果有guid if (matchResult.Success) { fileName = fileName.Replace($"{matchResult.Value}", ""); } var trustedFileNameForFileStorage = string.Empty; if (isChangeToPdfFormat==false) { trustedFileNameForFileStorage= Guid.NewGuid().ToString() + fileName; } else { trustedFileNameForFileStorage=Guid.NewGuid().ToString() + Path.GetFileNameWithoutExtension(fileName) + ".pdf"; } return (trustedFileNameForFileStorage, fileName); } //API vue 部署目录 public static string GetIRaCISRootPath(IWebHostEnvironment _hostEnvironment) { var rootPath = (Directory.GetParent(_hostEnvironment.ContentRootPath.TrimEnd('\\'))).IfNullThrowException().FullName; return rootPath; } //获取环境存储根目录 public static string GetIRaCISRootDataFolder(IWebHostEnvironment _hostEnvironment) { var rootPath = GetIRaCISRootPath(_hostEnvironment); var rootFolder = Path.Combine(rootPath, StaticData.Folder.IRaCISDataFolder); return rootFolder; } //根据相对路径 获取具体文件物理地址 public static string GetPhysicalFilePath(IWebHostEnvironment _hostEnvironment, string relativePath) { var rootPath = GetIRaCISRootPath(_hostEnvironment); var physicalFilePath = Path.Combine(rootPath, relativePath.Trim('/')); return physicalFilePath; } /// /// /// /// /// /// /// /// public static async Task<(string PhysicalPath, string FileName)> GetSystemClinicalPathAsync(IWebHostEnvironment _hostEnvironment, IRepository _clinicalDataTrialSetRepository, Guid id) { var systemClinicalData = await _clinicalDataTrialSetRepository.FirstOrDefaultAsync(t => t.Id == id); if (systemClinicalData == null || systemClinicalData.Path == string.Empty) { throw new BusinessValidationFailedException("数据库没有找到对应的数据模板文件,请联系系统运维人员。"); } var filePath = FileStoreHelper.GetPhysicalFilePath(_hostEnvironment, systemClinicalData.Path); if (!System.IO.File.Exists(filePath)) { throw new BusinessValidationFailedException("数据模板文件存储路径上未找对应文件,请联系系统运维人员。"); } return (filePath, systemClinicalData.FileName); } /// /// /// /// /// /// /// /// public static async Task<(string PhysicalPath, string FileName)> GetTrialClinicalPathAsync(IWebHostEnvironment _hostEnvironment, IRepository _clinicalDataTrialSetRepository, Guid id) { var trialClinicalData = await _clinicalDataTrialSetRepository.FirstOrDefaultAsync(t => t.Id == id); if (trialClinicalData == null|| trialClinicalData.Path==string.Empty) { throw new BusinessValidationFailedException("数据库没有找到对应的数据模板文件,请联系系统运维人员。"); } var filePath = FileStoreHelper.GetPhysicalFilePath(_hostEnvironment, trialClinicalData.Path); if (!System.IO.File.Exists(filePath)) { throw new BusinessValidationFailedException("数据模板文件存储路径上未找对应文件,请联系系统运维人员。"); } return (filePath, trialClinicalData.FileName); } //通过编码获取通用文档具体物理路径 public static async Task<(string PhysicalPath, string FileName)> GetCommonDocPhysicalFilePathAsync(IWebHostEnvironment _hostEnvironment, IRepository _commonDocumentRepository, string code) { var doc = await _commonDocumentRepository.FirstOrDefaultAsync(t => t.Code == code); if (doc == null) { throw new BusinessValidationFailedException("数据库没有找到对应的数据模板文件,请联系系统运维人员。"); } var filePath = FileStoreHelper.GetPhysicalFilePath(_hostEnvironment, doc.Path); if (!System.IO.File.Exists(filePath)) { throw new BusinessValidationFailedException("数据模板文件存储路径上未找对应文件,请联系系统运维人员。"); } return (filePath, doc.Name.Trim('/')); } /// /// 写文件导到磁盘 /// /// 流 /// 文件保存路径 /// public static async Task WriteFileAsync(System.IO.Stream stream, string path) { const int FILE_WRITE_SIZE = 84975;//写出缓冲区大小 int writeCount = 0; using (FileStream fileStream = new FileStream(path, FileMode.Create, FileAccess.Write, FileShare.Write, FILE_WRITE_SIZE, true)) { byte[] byteArr = new byte[FILE_WRITE_SIZE]; int readCount = 0; while ((readCount = await stream.ReadAsync(byteArr, 0, byteArr.Length)) > 0) { await fileStream.WriteAsync(byteArr, 0, readCount); writeCount += readCount; } } return writeCount; } // 获取项目签名文档存放路径 public static (string PhysicalPath, string RelativePath) GetTrialSignDocPath(IWebHostEnvironment _hostEnvironment, Guid trialId, string fileName) { var rootPath = FileStoreHelper.GetIRaCISRootDataFolder(_hostEnvironment); //文件类型路径处理 var uploadFolderPath = Path.Combine(rootPath, StaticData.Folder.TrialDataFolder, trialId.ToString(), StaticData.Folder.SignDocumentFolder); if (!Directory.Exists(uploadFolderPath)) Directory.CreateDirectory(uploadFolderPath); var (trustedFileNameForFileStorage, fileRealName) = FileStoreHelper.GetStoreFileName(fileName); var relativePath = $"/{StaticData.Folder.IRaCISDataFolder}/{StaticData.Folder.TrialDataFolder}/{trialId}/{StaticData.Folder.SignDocumentFolder}/{trustedFileNameForFileStorage}"; var serverFilePath = Path.Combine(uploadFolderPath, trustedFileNameForFileStorage); return (serverFilePath, relativePath); } // 获取系统签名文档存放路径 public static (string PhysicalPath, string RelativePath) GetSystemSignDocPath(IWebHostEnvironment _hostEnvironment, string fileName) { var rootPath = FileStoreHelper.GetIRaCISRootDataFolder(_hostEnvironment); //文件类型路径处理 var uploadFolderPath = Path.Combine(rootPath, StaticData.Folder.SystemDataFolder, StaticData.Folder.SignDocumentFolder); if (!Directory.Exists(uploadFolderPath)) Directory.CreateDirectory(uploadFolderPath); var (trustedFileNameForFileStorage, fileRealName) = FileStoreHelper.GetStoreFileName(fileName); var relativePath = $"/{StaticData.Folder.IRaCISDataFolder}/{StaticData.Folder.SystemDataFolder}/{ StaticData.Folder.SignDocumentFolder}/{trustedFileNameForFileStorage}"; var serverFilePath = Path.Combine(uploadFolderPath, trustedFileNameForFileStorage); return (serverFilePath, relativePath); } // 获取通用文档存放路径(excel模板 ) public static (string PhysicalPath, string RelativePath) GetCommonDocPath(IWebHostEnvironment _hostEnvironment, string fileName) { var rootPath = FileStoreHelper.GetIRaCISRootDataFolder(_hostEnvironment); //文件类型路径处理 var uploadFolderPath = Path.Combine(rootPath, StaticData.Folder.SystemDataFolder, StaticData.Folder.DataTemplate); if (!Directory.Exists(uploadFolderPath)) Directory.CreateDirectory(uploadFolderPath); var (trustedFileNameForFileStorage, fileRealName) = FileStoreHelper.GetStoreFileName(fileName); var relativePath = $"/{StaticData.Folder.IRaCISDataFolder}/{StaticData.Folder.SystemDataFolder}/{StaticData.Folder.DataTemplate}/{trustedFileNameForFileStorage}"; var serverFilePath = Path.Combine(uploadFolderPath, trustedFileNameForFileStorage); return (serverFilePath, relativePath); } //获取系统通知文档存放路径 public static (string PhysicalPath, string RelativePath) GetSystemNoticePath(IWebHostEnvironment _hostEnvironment, string fileName) { var rootPath = FileStoreHelper.GetIRaCISRootDataFolder(_hostEnvironment); //文件类型路径处理 var uploadFolderPath = Path.Combine(rootPath, StaticData.Folder.SystemDataFolder, StaticData.Folder.NoticeAttachment); if (!Directory.Exists(uploadFolderPath)) Directory.CreateDirectory(uploadFolderPath); var (trustedFileNameForFileStorage, fileRealName) = FileStoreHelper.GetStoreFileName(fileName); var relativePath = $"/{StaticData.Folder.IRaCISDataFolder}/{StaticData.Folder.SystemDataFolder}/{StaticData.Folder.NoticeAttachment}/{trustedFileNameForFileStorage}"; var serverFilePath = Path.Combine(uploadFolderPath, trustedFileNameForFileStorage); return (serverFilePath, relativePath); } // 获取一致性核查路径 public static (string PhysicalPath, string RelativePath) GetTrialCheckFilePath(IWebHostEnvironment _hostEnvironment, string fileName,Guid trialId) { var rootPath = FileStoreHelper.GetIRaCISRootDataFolder(_hostEnvironment); //上传根路径 string uploadFolderPath = Path.Combine(rootPath, StaticData.Folder.TrialDataFolder, trialId.ToString(), StaticData.Folder.UploadEDCData); if (!Directory.Exists(uploadFolderPath)) Directory.CreateDirectory(uploadFolderPath); //存放核对表 var (trustedFileNameForFileStorage, realFileName) = FileStoreHelper.GetStoreFileName(fileName); var relativePath = $"/{StaticData.Folder.IRaCISDataFolder}/{StaticData.Folder.TrialDataFolder}/{trialId}/{StaticData.Folder.UploadEDCData}/{trustedFileNameForFileStorage}"; var serverFilePath = Path.Combine(uploadFolderPath, trustedFileNameForFileStorage); return (serverFilePath, relativePath); } public static (string PhysicalPath, string RelativePath, string FileRealName) GetClinicalTemplatePath(IWebHostEnvironment _hostEnvironment, string fileName,Guid trialId) { var rootPath = FileStoreHelper.GetIRaCISRootDataFolder(_hostEnvironment); string uploadFolderPath = Path.Combine(rootPath, StaticData.Folder.TrialDataFolder, "ClinicalTemplate", trialId.ToString(), StaticData.Folder.TreatmenthistoryFolder); if (!Directory.Exists(uploadFolderPath)) Directory.CreateDirectory(uploadFolderPath); var (trustedFileNameForFileStorage, fileRealName) = FileStoreHelper.GetStoreFileName(fileName); var relativePath = $"/{StaticData.Folder.IRaCISDataFolder}/{StaticData.Folder.TrialDataFolder}/ClinicalTemplate/{trialId}/{StaticData.Folder.TreatmenthistoryFolder}/{trustedFileNameForFileStorage}"; var serverFilePath = Path.Combine(uploadFolderPath, trustedFileNameForFileStorage); return (serverFilePath, relativePath, fileRealName); } public static (string PhysicalPath, string RelativePath, string FileRealName) GetReadClinicalDataPath(IWebHostEnvironment _hostEnvironment, string fileName, Guid trialId, Guid siteId, Guid subjectId, Guid readingId) { var rootPath = FileStoreHelper.GetIRaCISRootDataFolder(_hostEnvironment); string uploadFolderPath = Path.Combine(rootPath, StaticData.Folder.TrialDataFolder, trialId.ToString(), siteId.ToString(), subjectId.ToString(), StaticData.Folder.Reading, readingId.ToString()); if (!Directory.Exists(uploadFolderPath)) Directory.CreateDirectory(uploadFolderPath); var (trustedFileNameForFileStorage, fileRealName) = FileStoreHelper.GetStoreFileName(fileName); var relativePath = $"/{StaticData.Folder.IRaCISDataFolder}/{StaticData.Folder.TrialDataFolder}/{trialId}/{siteId}/{subjectId}/{StaticData.Folder.Reading}/{readingId}/{trustedFileNameForFileStorage}"; var serverFilePath = Path.Combine(uploadFolderPath, trustedFileNameForFileStorage); return (serverFilePath, relativePath, fileRealName); } //获取临床数据存放路径 public static (string PhysicalPath, string RelativePath,string FileRealName) GetClinicalDataPath(IWebHostEnvironment _hostEnvironment, string fileName,Guid trialId,Guid siteId,Guid subjectId,Guid subjectVisitId) { var rootPath = FileStoreHelper.GetIRaCISRootDataFolder(_hostEnvironment); string uploadFolderPath = Path.Combine(rootPath, StaticData.Folder.TrialDataFolder, trialId.ToString(),siteId.ToString(), subjectId.ToString(), subjectVisitId.ToString(), StaticData.Folder.TreatmenthistoryFolder); if (!Directory.Exists(uploadFolderPath)) Directory.CreateDirectory(uploadFolderPath); var (trustedFileNameForFileStorage, fileRealName) = FileStoreHelper.GetStoreFileName(fileName); var relativePath = $"/{StaticData.Folder.IRaCISDataFolder}/{StaticData.Folder.TrialDataFolder}/{trialId}/{siteId}/{subjectId}/{subjectVisitId}/{StaticData.Folder.TreatmenthistoryFolder}/{trustedFileNameForFileStorage}"; var serverFilePath = Path.Combine(uploadFolderPath, trustedFileNameForFileStorage); return (serverFilePath, relativePath, fileRealName); } public static (string PhysicalPath, string RelativePath, string FileRealName) GetClinicalDataPath(IWebHostEnvironment _hostEnvironment, string fileName, Guid trialId , Guid subjectId) { var rootPath = FileStoreHelper.GetIRaCISRootDataFolder(_hostEnvironment); string uploadFolderPath = Path.Combine(rootPath, StaticData.Folder.TrialDataFolder, trialId.ToString(), subjectId.ToString(), StaticData.Folder.TreatmenthistoryFolder); if (!Directory.Exists(uploadFolderPath)) Directory.CreateDirectory(uploadFolderPath); var (trustedFileNameForFileStorage, fileRealName) = FileStoreHelper.GetStoreFileName(fileName); var relativePath = $"/{StaticData.Folder.IRaCISDataFolder}/{StaticData.Folder.TrialDataFolder}/{trialId}/{subjectId}/{StaticData.Folder.TreatmenthistoryFolder}/{trustedFileNameForFileStorage}"; var serverFilePath = Path.Combine(uploadFolderPath, trustedFileNameForFileStorage); return (serverFilePath, relativePath, fileRealName); } /// /// 上传截图 /// /// /// /// /// /// /// /// public static (string PhysicalPath, string RelativePath, string FileRealName) GetUploadPrintscreenFilePath(IWebHostEnvironment _hostEnvironment, string fileName, Guid trialId, Guid siteid, Guid subjectId) { var rootPath = FileStoreHelper.GetIRaCISRootDataFolder(_hostEnvironment); string uploadFolderPath = Path.Combine(rootPath, StaticData.Folder.TrialDataFolder, trialId.ToString(), siteid.ToString(), subjectId.ToString()); if (!Directory.Exists(uploadFolderPath)) Directory.CreateDirectory(uploadFolderPath); var (trustedFileNameForFileStorage, fileRealName) = FileStoreHelper.GetStoreFileName(fileName); var relativePath = $"/{StaticData.Folder.IRaCISDataFolder}/{StaticData.Folder.TrialDataFolder}/{trialId}/{siteid}/{subjectId}/{trustedFileNameForFileStorage}"; var serverFilePath = Path.Combine(uploadFolderPath, trustedFileNameForFileStorage); return (serverFilePath, relativePath, fileRealName); } /// /// 通用获取文件路径 /// /// /// /// /// /// /// public static (string PhysicalPath, string RelativePath, string FileRealName) GetFilePath(IWebHostEnvironment _hostEnvironment, string fileName, Guid trialId, Guid id,string type) { var rootPath = FileStoreHelper.GetIRaCISRootDataFolder(_hostEnvironment); string uploadFolderPath = Path.Combine(rootPath, StaticData.Folder.TrialDataFolder, trialId.ToString(), id.ToString(), type); if (!Directory.Exists(uploadFolderPath)) Directory.CreateDirectory(uploadFolderPath); var (trustedFileNameForFileStorage, fileRealName) = FileStoreHelper.GetStoreFileName(fileName); var relativePath = $"/{StaticData.Folder.IRaCISDataFolder}/{StaticData.Folder.TrialDataFolder}/{trialId}/{id}/{type}/{trustedFileNameForFileStorage}"; var serverFilePath = Path.Combine(uploadFolderPath, trustedFileNameForFileStorage); return (serverFilePath, relativePath, fileRealName); } public static (string PhysicalPath, string RelativePath, string FileRealName) GetMedicalReviewImage(IWebHostEnvironment _hostEnvironment, string fileName, Guid trialId, Guid taskMedicalReviewId) { var rootPath = FileStoreHelper.GetIRaCISRootDataFolder(_hostEnvironment); string uploadFolderPath = Path.Combine(rootPath, StaticData.Folder.TrialDataFolder, trialId.ToString(), taskMedicalReviewId.ToString(), StaticData.Folder.MedicalReview); if (!Directory.Exists(uploadFolderPath)) Directory.CreateDirectory(uploadFolderPath); var (trustedFileNameForFileStorage, fileRealName) = FileStoreHelper.GetStoreFileName(fileName); var relativePath = $"/{StaticData.Folder.IRaCISDataFolder}/{StaticData.Folder.TrialDataFolder}/{trialId}/{taskMedicalReviewId}/{StaticData.Folder.MedicalReview}/{trustedFileNameForFileStorage}"; var serverFilePath = Path.Combine(uploadFolderPath, trustedFileNameForFileStorage); return (serverFilePath, relativePath, fileRealName); } //获取非dicom文件存放路径 public static (string PhysicalPath, string RelativePath, string FileRealName) GetNoneDicomFilePath(IWebHostEnvironment _hostEnvironment, string fileName, Guid trialId, Guid siteId, Guid subjectId, Guid subjectVisitId) { var rootPath = FileStoreHelper.GetIRaCISRootDataFolder(_hostEnvironment); string uploadFolderPath = Path.Combine(rootPath, StaticData.Folder.TrialDataFolder, trialId.ToString(), siteId.ToString(), subjectId.ToString(), subjectVisitId.ToString(), StaticData.Folder.NoneDicomFolder); if (!Directory.Exists(uploadFolderPath)) Directory.CreateDirectory(uploadFolderPath); var (trustedFileNameForFileStorage, fileRealName) = FileStoreHelper.GetStoreFileName(fileName); var relativePath = $"/{StaticData.Folder.IRaCISDataFolder}/{StaticData.Folder.TrialDataFolder}/{trialId}/{siteId}/{subjectId}/{subjectVisitId}/{StaticData.Folder.NoneDicomFolder}/{trustedFileNameForFileStorage}"; var serverFilePath = Path.Combine(uploadFolderPath, trustedFileNameForFileStorage); return (serverFilePath, relativePath, fileRealName); } // 获取 入组确认 PD 进展发送邮件Word|PDF 存放路径 public static (string PhysicalPath, string RelativePath, string FileRealName) GetSubjectEnrollConfirmOrPDEmailPath(IWebHostEnvironment _hostEnvironment, string fileName, Guid trialId, Guid siteId, Guid subjectId,bool isChangeToPdfFormat=false) { var rootPath = FileStoreHelper.GetIRaCISRootDataFolder(_hostEnvironment); string uploadFolderPath = Path.Combine(rootPath, StaticData.Folder.TrialDataFolder, trialId.ToString(), siteId.ToString(), subjectId.ToString()); if (!Directory.Exists(uploadFolderPath)) Directory.CreateDirectory(uploadFolderPath); var (trustedFileNameForFileStorage, fileRealName) = FileStoreHelper.GetStoreFileName(fileName, isChangeToPdfFormat); var relativePath = $"/{StaticData.Folder.IRaCISDataFolder}/{StaticData.Folder.TrialDataFolder}/{trialId}/{siteId}/{subjectId}/{trustedFileNameForFileStorage}"; var serverFilePath = Path.Combine(uploadFolderPath, trustedFileNameForFileStorage); return (serverFilePath, relativePath, fileRealName); } public static string GetSubjectVisitDicomFolderPhysicalPath(IWebHostEnvironment _hostEnvironment,Guid trialId, Guid siteId, Guid subjectId, Guid subjectVisitId) { var rootPath = FileStoreHelper.GetIRaCISRootDataFolder(_hostEnvironment); return Path.Combine(rootPath, StaticData.Folder.TrialDataFolder, trialId.ToString(), siteId.ToString(), subjectId.ToString(), subjectVisitId.ToString(), StaticData.Folder.DicomFolder); } public static (string PhysicalPath, string RelativePath) GetDicomInstanceFilePath(IWebHostEnvironment _hostEnvironment, Guid trialId, Guid siteId, Guid subjectId, Guid subjectVisitId, Guid studyId, Guid instanceId) { var rootPath = FileStoreHelper.GetIRaCISRootDataFolder(_hostEnvironment); //加入检查批次层级 和Data var path = Path.Combine(rootPath, StaticData.Folder.TrialDataFolder, trialId.ToString(), siteId.ToString(), subjectId.ToString(), subjectVisitId.ToString(), StaticData.Folder.DicomFolder, studyId.ToString()); if (!Directory.Exists(path)) { Directory.CreateDirectory(path); } var physicalPath = Path.Combine(path, instanceId.ToString() ); var relativePath = $"/{StaticData.Folder.IRaCISDataFolder}/{StaticData.Folder.TrialDataFolder}/{trialId}/{siteId}/{subjectId}/{subjectVisitId}/{StaticData.Folder.DicomFolder}/{studyId}/{instanceId}"; //var physicalPath = Path.Combine(path, instanceId.ToString() + ".dcm"); //var relativePath = $"/{StaticData.Folder.IRaCISDataFolder}/{StaticData.Folder.TrialDataFolder}/{trialId}/{siteId}/{subjectId}/{subjectVisitId}/{StaticData.Folder.DicomFolder}/{studyId}/{instanceId}.dcm"; return (physicalPath, relativePath); } // 获取医生通用文件存放路径 public static (string PhysicalPath, string RelativePath) GetDoctorOrdinaryFilePath(IWebHostEnvironment _hostEnvironment, string fileName,Guid doctorId,string attachmentType) { var rootPath = FileStoreHelper.GetIRaCISRootDataFolder(_hostEnvironment); //文件类型路径处理 var uploadFolderPath = Path.Combine(rootPath, "UploadFile", doctorId.ToString(), attachmentType); if (!Directory.Exists(uploadFolderPath)) Directory.CreateDirectory(uploadFolderPath); var (trustedFileNameForFileStorage, fileRealName) = FileStoreHelper.GetStoreFileName(fileName); var relativePath = $"/{StaticData.Folder.IRaCISDataFolder}/{StaticData.Folder.UploadFileFolder}/{doctorId}/{attachmentType}/{trustedFileNameForFileStorage}"; var serverFilePath = Path.Combine(uploadFolderPath, trustedFileNameForFileStorage); return (serverFilePath, relativePath); } public static (string PhysicalPath, string RelativePath) GetNonDoctorFilePath(IWebHostEnvironment _hostEnvironment, string fileName, string attachmentType) { var rootPath = FileStoreHelper.GetIRaCISRootDataFolder(_hostEnvironment); //文件类型路径处理 var uploadFolderPath = Path.Combine(rootPath, StaticData.Folder.UploadFileFolder, attachmentType); if (!Directory.Exists(uploadFolderPath)) Directory.CreateDirectory(uploadFolderPath); var (trustedFileNameForFileStorage, fileRealName) = FileStoreHelper.GetStoreFileName(fileName); var relativePath = $"/{StaticData.Folder.IRaCISDataFolder}/{StaticData.Folder.UploadFileFolder}/{attachmentType}/{trustedFileNameForFileStorage}"; var serverFilePath = Path.Combine(uploadFolderPath, trustedFileNameForFileStorage); return (serverFilePath, relativePath); } }