386 lines
18 KiB
C#
386 lines
18 KiB
C#
using IRaCIS.Application.Interfaces;
|
|
using IRaCIS.Core.Infra.EFCore;
|
|
using IRaCIS.Core.Domain.Share;
|
|
using IRaCIS.Core.Application.Filter;
|
|
using Microsoft.AspNetCore.Mvc;
|
|
using IRaCIS.Core.Application.Service.WorkLoad.DTO;
|
|
using Microsoft.AspNetCore.Authorization;
|
|
using IRaCIS.Core.Application.Auth;
|
|
using IRaCIS.Core.Application.Service.Reading.Dto;
|
|
using MassTransit;
|
|
using System.ComponentModel.DataAnnotations;
|
|
using System.Reflection;
|
|
using IRaCIS.Core.Infra.EFCore.Common;
|
|
using IRaCIS.Core.Application.Contracts;
|
|
using IRaCIS.Core.Application.Service.Inspection.DTO;
|
|
using Panda.DynamicWebApi.Attributes;
|
|
|
|
namespace IRaCIS.Application.Services
|
|
{
|
|
/// <summary>
|
|
/// 阅片临床数据
|
|
/// </summary>
|
|
[ApiExplorerSettings(GroupName = "Reading")]
|
|
public class ReadingClinicalDataService : BaseService, IReadingClinicalDataService
|
|
{
|
|
private readonly IRepository<ReadingClinicalData> _readingClinicalDataRepository;
|
|
private readonly IRepository<ClinicalDataTrialSet> _clinicalDataTrialSetRepository;
|
|
|
|
private readonly IRepository<PreviousPDF> _previousPDFRepository;
|
|
private readonly IRepository<SubjectVisit> _subjectVisitRepository;
|
|
private readonly IRepository<PreviousHistory> _previousHistoryRepository;
|
|
private readonly IRepository<PreviousOther> _previousOtherRepository;
|
|
private readonly IRepository<PreviousSurgery> _previousSurgeryRepository;
|
|
private readonly IRepository<ReadingClinicalDataPDF> _readingClinicalDataPDFRepository;
|
|
|
|
public ReadingClinicalDataService(IRepository<ReadingClinicalData> readingClinicalDataRepository,
|
|
IRepository<ClinicalDataTrialSet> clinicalDataTrialSetRepository,
|
|
IRepository<PreviousPDF> previousPDFRepository,
|
|
IRepository<SubjectVisit> subjectVisitRepository,
|
|
IRepository<PreviousHistory> previousHistoryRepository,
|
|
IRepository<PreviousOther> previousOtherRepository,
|
|
IRepository<PreviousSurgery> previousSurgeryRepository,
|
|
IRepository<ReadingClinicalDataPDF> readingClinicalDataPDFRepository
|
|
)
|
|
{
|
|
this._readingClinicalDataRepository = readingClinicalDataRepository;
|
|
this._clinicalDataTrialSetRepository = clinicalDataTrialSetRepository;
|
|
this._previousPDFRepository = previousPDFRepository;
|
|
this._subjectVisitRepository = subjectVisitRepository;
|
|
this._previousHistoryRepository = previousHistoryRepository;
|
|
this._previousOtherRepository = previousOtherRepository;
|
|
this._previousSurgeryRepository = previousSurgeryRepository;
|
|
this._readingClinicalDataPDFRepository = readingClinicalDataPDFRepository;
|
|
}
|
|
|
|
|
|
/// <summary>
|
|
/// 新增或者修改
|
|
/// </summary>
|
|
/// <param name="indto"></param>
|
|
/// <returns></returns>
|
|
[HttpPost]
|
|
public async Task<IResponseOutput> AddOrUpdateReadingClinicalData(AddOrUpdateReadingClinicalDataDto indto)
|
|
{
|
|
var existsQuery = _readingClinicalDataRepository
|
|
.WhereIf(indto.Id != null,x=>x.Id!=indto.Id)
|
|
.Where(x => x.ClinicalDataTrialSetId == indto.ClinicalDataTrialSetId&&x.ReadingId==indto.ReadingId);
|
|
|
|
if (await existsQuery.AnyAsync())
|
|
{
|
|
return ResponseOutput.NotOk("存在同类型的临床数据");
|
|
}
|
|
var clinicalDataTrialSet = (await _clinicalDataTrialSetRepository.Where(x => x.Id == indto.ClinicalDataTrialSetId).FirstOrDefaultAsync()).IfNullThrowException();
|
|
if (indto.Id == null)
|
|
{
|
|
var entity = _mapper.Map<ReadingClinicalData>(indto);
|
|
entity.ReadingClinicalDataPDFList = indto.AddFileList.Select(x => new ReadingClinicalDataPDF()
|
|
{
|
|
TrialId = entity.TrialId,
|
|
SubjectId= indto.SubjectId,
|
|
FileName=x.FileName,
|
|
Path=x.Path,
|
|
ClinicalDataTrialSetId=indto.ClinicalDataTrialSetId,
|
|
IsVisit= indto.IsVisit,
|
|
ClinicalDataLevel= clinicalDataTrialSet.ClinicalDataLevel,
|
|
ReadingId=indto.ReadingId
|
|
}).ToList();
|
|
await _readingClinicalDataRepository.AddAsync(entity, true);
|
|
var success = await _readingClinicalDataRepository.SaveChangesAsync();
|
|
return ResponseOutput.Ok(entity.Id);
|
|
}
|
|
else
|
|
{
|
|
var entity = (await _readingClinicalDataRepository.Where(t => t.Id == indto.Id, true).FirstOrDefaultAsync()).IfNullThrowException();
|
|
_mapper.Map(indto, entity);
|
|
await _readingClinicalDataPDFRepository.DeleteFromQueryAsync(x => indto.DeleteFileIds.Contains(x.Id));
|
|
await _readingClinicalDataRepository.SaveChangesAsync();
|
|
var addFileList = indto.AddFileList.Select(x => new ReadingClinicalDataPDF()
|
|
{
|
|
TrialId = entity.TrialId,
|
|
SubjectId = indto.SubjectId,
|
|
FileName = x.FileName,
|
|
Path = x.Path,
|
|
ClinicalDataTrialSetId = indto.ClinicalDataTrialSetId,
|
|
IsVisit = indto.IsVisit,
|
|
ClinicalDataLevel = clinicalDataTrialSet.ClinicalDataLevel,
|
|
ReadingId = indto.ReadingId,
|
|
ReadingClinicalDataId= entity.Id,
|
|
}).ToList();
|
|
await _readingClinicalDataPDFRepository.AddRangeAsync(addFileList);
|
|
var success = await _readingClinicalDataRepository.SaveChangesAsync();
|
|
return ResponseOutput.Ok(entity.Id);
|
|
|
|
}
|
|
|
|
}
|
|
|
|
/// <summary>
|
|
/// 获取CRC上传的文件
|
|
/// </summary>
|
|
/// <param name="inDto"></param>
|
|
/// <returns></returns>
|
|
[HttpPost]
|
|
public async Task<List<GetCRCClinicalDataOutDto>> GetCRCClinicalData(GetCRCClinicalDataInDto inDto)
|
|
{
|
|
await this.AddCRCClinicalData(inDto);
|
|
|
|
List<GetCRCClinicalDataOutDto> cRCClinicalDataList = await _readingClinicalDataRepository.Where(x =>x.ReadingId==inDto.SubjectVisitId)
|
|
.Where(x=> x.ClinicalDataTrialSet.TrialId == inDto.TrialId && x.ClinicalDataTrialSet.UploadRole == UploadRole.CRC && x.ClinicalDataTrialSet.ClinicalDataLevel != ClinicalLevel.Read && x.ClinicalDataTrialSet.IsConfirm)
|
|
.Select(x => new GetCRCClinicalDataOutDto()
|
|
{
|
|
Id=x.Id,
|
|
ClinicalDataSetName = x.ClinicalDataTrialSet.ClinicalDataSetName,
|
|
ClinicalUploadType=x.ClinicalDataTrialSet.ClinicalUploadType,
|
|
ClinicalDataTrialSetId = x.ClinicalDataTrialSet.Id,
|
|
FileName=x.ClinicalDataTrialSet.FileName,
|
|
UploadRole=x.ClinicalDataTrialSet.UploadRole,
|
|
Path=x.ClinicalDataTrialSet.Path,
|
|
}).ToListAsync() ;
|
|
|
|
PageOutput<GetReadingClinicalDataListOutDto> clinicalData = await this.GetReadingClinicalDataList(new GetReadingClinicalDataListIndto()
|
|
{
|
|
PageIndex = 1,
|
|
PageSize = 9999,
|
|
SubjectId = inDto.SubjectId,
|
|
ReadingId = inDto.SubjectVisitId,
|
|
|
|
});
|
|
|
|
var previousHistoryList = await _previousHistoryRepository.Where(x => x.SubjectVisitId == inDto.SubjectVisitId).ProjectTo<PreviousHistoryView>(_mapper.ConfigurationProvider).ToListAsync();
|
|
var previousOtherList = await _previousOtherRepository.Where(x => x.SubjectVisitId == inDto.SubjectVisitId).ProjectTo<PreviousOtherView>(_mapper.ConfigurationProvider).ToListAsync();
|
|
var previousSurgeryList = await _previousSurgeryRepository.Where(x => x.SubjectVisitId == inDto.SubjectVisitId).ProjectTo<PreviousSurgeryView>(_mapper.ConfigurationProvider).ToListAsync();
|
|
|
|
foreach (var item in cRCClinicalDataList)
|
|
{
|
|
item.PDFFileList = clinicalData.CurrentPageData.Where(y => y.ClinicalDataTrialSetId == item.ClinicalDataTrialSetId).SelectMany(x=>x.FileList).ToList();
|
|
item.ClinicalTableData = new ClinicalDataTable()
|
|
{
|
|
PreviousHistoryList = previousHistoryList.Where(x => x.ClinicalDataTrialSetId == item.ClinicalDataTrialSetId).ToList(),
|
|
PreviousOtherList = previousOtherList.Where(x => x.ClinicalDataTrialSetId == item.ClinicalDataTrialSetId).ToList(),
|
|
PreviousSurgeryList = previousSurgeryList.Where(x => x.ClinicalDataTrialSetId == item.ClinicalDataTrialSetId).ToList(),
|
|
};
|
|
|
|
}
|
|
return cRCClinicalDataList;
|
|
}
|
|
|
|
/// <summary>
|
|
/// 添加CRC数据类型
|
|
/// </summary>
|
|
/// <returns></returns>
|
|
private async Task AddCRCClinicalData(GetCRCClinicalDataInDto inDto)
|
|
{
|
|
var cRCClinicalDataIds = await _clinicalDataTrialSetRepository.Where(x => x.TrialId == inDto.TrialId && x.UploadRole == UploadRole.CRC && x.ClinicalDataLevel != ClinicalLevel.Read && x.IsConfirm).Select(x => x.Id).ToListAsync();
|
|
|
|
var needAddIds = cRCClinicalDataIds.Where(x => _readingClinicalDataRepository.Where(y => y.ReadingId == inDto.SubjectVisitId && x == y.ClinicalDataTrialSetId).Count() == 0).ToList();
|
|
|
|
List<ReadingClinicalData> readingClinicals = needAddIds.Select(x => new ReadingClinicalData()
|
|
{
|
|
ClinicalDataTrialSetId = x,
|
|
IsVisit = true,
|
|
SubjectId = inDto.SubjectId,
|
|
ReadingId = inDto.SubjectVisitId,
|
|
TrialId = inDto.TrialId
|
|
}).ToList();
|
|
|
|
await _readingClinicalDataRepository.AddRangeAsync(readingClinicals);
|
|
|
|
await _readingClinicalDataRepository.SaveChangesAsync();
|
|
|
|
}
|
|
|
|
///// <summary>
|
|
///// 设置临床数据是否盲化
|
|
///// </summary>
|
|
///// <returns></returns>
|
|
//[HttpPost]
|
|
//public async Task<IResponseOutput> SetReadingClinicalDataIsBlind(SetReadingClinicalDataIsBlind inDto)
|
|
//{
|
|
// await _readingClinicalDataRepository.UpdatePartialFromQueryAsync(inDto.Id, x=>new ReadingClinicalData() {
|
|
// IsBlind=inDto.IsBlind,
|
|
// });
|
|
// return ResponseOutput.Ok(await _readingClinicalDataRepository.SaveChangesAsync());
|
|
//}
|
|
|
|
/// <summary>
|
|
/// 删除
|
|
/// </summary>
|
|
/// <param name="id"></param>
|
|
/// <returns></returns>
|
|
[HttpDelete("{id:guid}")]
|
|
public async Task<IResponseOutput> DeleteReadingClinicalData(Guid id)
|
|
{
|
|
|
|
await _readingClinicalDataRepository.DeleteFromQueryAsync(x => x.Id == id, true);
|
|
return ResponseOutput.Result(true);
|
|
}
|
|
|
|
|
|
/// <summary>
|
|
/// 获取下拉菜单
|
|
/// </summary>
|
|
/// <param name="inDto"></param>
|
|
/// <returns></returns>
|
|
[HttpPost]
|
|
public async Task<List<GetTrialClinicalDataSelectOutDto>> GetTrialClinicalDataSelect(GetTrialClinicalDataSelectIndto inDto)
|
|
{
|
|
var userTypes = new List<int>() {
|
|
(int)UserTypeEnum.ProjectManager,
|
|
(int)UserTypeEnum.SPM,
|
|
(int)UserTypeEnum.CPM,
|
|
(int)UserTypeEnum.IndependentReviewer,
|
|
};
|
|
|
|
|
|
|
|
if (userTypes.Contains(_userInfo.UserTypeEnumInt))
|
|
{
|
|
inDto.UploadRole = UploadRole.PM;
|
|
}
|
|
|
|
|
|
|
|
var usedIdsQuery = _readingClinicalDataRepository.Where(x => x.ReadingId == inDto.ReadingId && x.Id != inDto.ReadingClinicalDataId).Select(x => x.ClinicalDataTrialSetId);
|
|
List<GetTrialClinicalDataSelectOutDto> clinicalList = await _clinicalDataTrialSetRepository.Where(x=>x.TrialId==inDto.TrialId&&x.IsConfirm)
|
|
.WhereIf(inDto.UploadRole!=null,x=>x.UploadRole==inDto.UploadRole)
|
|
.Where(x=> !usedIdsQuery.Contains(x.Id))
|
|
.WhereIf(inDto.IsVisit&&inDto.IsBaseLine,x=>x.ClinicalDataLevel == ClinicalLevel.Subject||x.ClinicalDataLevel== ClinicalLevel.SubjectVisit)
|
|
.WhereIf(inDto.IsVisit&&! inDto.IsBaseLine, x => x.ClinicalDataLevel == ClinicalLevel.SubjectVisit)
|
|
.WhereIf(!inDto.IsVisit, x => x.ClinicalDataLevel == ClinicalLevel.Read)
|
|
.Select(x => new GetTrialClinicalDataSelectOutDto()
|
|
{
|
|
ClinicalDataLevel = x.ClinicalDataLevel,
|
|
ClinicalDataSetName = x.ClinicalDataSetName,
|
|
ClinicalUploadType = x.ClinicalUploadType,
|
|
FileName=x.FileName,
|
|
Path=x.Path,
|
|
Id = x.Id
|
|
}).ToListAsync() ;
|
|
return clinicalList;
|
|
}
|
|
|
|
|
|
/// <summary>
|
|
/// 影像阅片临床数据签名
|
|
/// </summary>
|
|
// [HttpPost]
|
|
[NonDynamicMethod]
|
|
public async Task<IResponseOutput> ReadClinicalDataSign(ReadingClinicalDataSignIndto inDto)
|
|
{
|
|
await _readingClinicalDataRepository.UpdatePartialFromQueryAsync(x => x.Id == inDto.ReadingClinicalDataId, x => new ReadingClinicalData()
|
|
{
|
|
IsSign = true
|
|
});
|
|
|
|
var result =await _readingClinicalDataRepository.SaveChangesAsync();
|
|
|
|
return ResponseOutput.Result(result);
|
|
}
|
|
|
|
|
|
/// <summary>
|
|
/// 获取阅片临床数据列表
|
|
/// </summary>
|
|
/// <param name="inDto"></param>
|
|
/// <returns></returns>
|
|
[HttpPost]
|
|
public async Task<PageOutput<GetReadingClinicalDataListOutDto>> GetReadingClinicalDataList(GetReadingClinicalDataListIndto inDto)
|
|
{
|
|
//var userPMTypes = new List<int>() {
|
|
// (int)UserTypeEnum.ProjectManager,
|
|
// (int)UserTypeEnum.SPM,
|
|
// (int)UserTypeEnum.CPM,
|
|
// (int)UserTypeEnum.IndependentReviewer,
|
|
// };
|
|
|
|
//if (userPMTypes.Contains(_userInfo.UserTypeEnumInt))
|
|
//{
|
|
// inDto.UploadRole = UploadRole.PM;
|
|
//}
|
|
|
|
//else
|
|
if (_userInfo.UserTypeEnumInt == (int)UserTypeEnum.ClinicalResearchCoordinator || _userInfo.UserTypeEnumInt == (int)UserTypeEnum.IQC)
|
|
{
|
|
inDto.UploadRole = UploadRole.CRC;
|
|
}
|
|
|
|
var isBaseLine = await _subjectVisitRepository.AnyAsync(x => x.Id == inDto.ReadingId && x.IsBaseLine);
|
|
var resultQuery = _readingClinicalDataRepository.Where(x => x.SubjectId == inDto.SubjectId)
|
|
.Where(x => x.ReadingId == inDto.ReadingId)
|
|
.WhereIf(inDto.UploadRole == UploadRole.CRC, x => x.ClinicalDataTrialSet.UploadRole == UploadRole.CRC)
|
|
//.WhereIf(inDto.UploadRole == UploadRole.PM && !isBaseLine, x => x.ClinicalDataTrialSet.UploadRole == UploadRole.PM)
|
|
.Select(x => new GetReadingClinicalDataListOutDto() {
|
|
ClinicalDataLevel = x.ClinicalDataTrialSet.ClinicalDataLevel,
|
|
SubjectId = x.SubjectId,
|
|
ClinicalDataSetName = x.ClinicalDataTrialSet.ClinicalDataSetName,
|
|
ClinicalDataTrialSetId = x.ClinicalDataTrialSetId,
|
|
IsSign = x.IsSign,
|
|
ClinicalUploadType = x.ClinicalDataTrialSet.ClinicalUploadType,
|
|
Id = x.Id,
|
|
UploadRole=x.ClinicalDataTrialSet.UploadRole,
|
|
IsCRCUpload = x.ClinicalDataTrialSet.UploadRole == UploadRole.CRC,
|
|
FileList = x.ReadingClinicalDataPDFList.Select(y => new GetFileDto()
|
|
{
|
|
Id = y.Id,
|
|
FileName = y.FileName,
|
|
Path = y.Path,
|
|
CreateTime=y.CreateTime,
|
|
}).ToList()
|
|
});
|
|
|
|
var result=await resultQuery.ToPagedListAsync(inDto.PageIndex, inDto.PageSize, inDto.SortField == null ? nameof(GetReadingClinicalDataListOutDto.ClinicalDataSetName) : inDto.SortField,
|
|
inDto.Asc);
|
|
|
|
|
|
var previousHistoryList = await _previousHistoryRepository.Where(x => x.SubjectVisitId == inDto.ReadingId).ProjectTo<PreviousHistoryView>(_mapper.ConfigurationProvider).ToListAsync();
|
|
var previousOtherList = await _previousOtherRepository.Where(x => x.SubjectVisitId == inDto.ReadingId).ProjectTo<PreviousOtherView>(_mapper.ConfigurationProvider).ToListAsync();
|
|
var previousSurgeryList = await _previousSurgeryRepository.Where(x => x.SubjectVisitId == inDto.ReadingId).ProjectTo<PreviousSurgeryView>(_mapper.ConfigurationProvider).ToListAsync();
|
|
|
|
|
|
|
|
foreach (var item in result.CurrentPageData)
|
|
{
|
|
item.ClinicalTableData = new ClinicalDataTable()
|
|
{
|
|
PreviousHistoryList = previousHistoryList.Where(x => x.ClinicalDataTrialSetId == item.ClinicalDataTrialSetId).ToList(),
|
|
PreviousOtherList = previousOtherList.Where(x => x.ClinicalDataTrialSetId == item.ClinicalDataTrialSetId).ToList(),
|
|
PreviousSurgeryList = previousSurgeryList.Where(x => x.ClinicalDataTrialSetId == item.ClinicalDataTrialSetId).ToList(),
|
|
};
|
|
|
|
}
|
|
|
|
return result;
|
|
}
|
|
|
|
|
|
/// <summary>
|
|
/// 获取单个阅片临床数据的所有文件
|
|
/// </summary>
|
|
/// <param name="inDto"></param>
|
|
/// <returns></returns>
|
|
[HttpPost]
|
|
public async Task<PageOutput<GetReadingClinicalDataPDFListOutDto>> GetReadingClinicalDataPDFList(GetReadingClinicalDataPDFListIndto inDto) {
|
|
|
|
var result = await _readingClinicalDataPDFRepository.Where(x => x.ReadingClinicalDataId == inDto.ReadingClinicalDataId).ProjectTo<GetReadingClinicalDataPDFListOutDto>(_mapper.ConfigurationProvider)
|
|
.ToPagedListAsync(inDto.PageIndex, inDto.PageSize, inDto.SortField == null ? nameof(GetReadingClinicalDataPDFListOutDto.FileName) : inDto.SortField,
|
|
inDto.Asc);
|
|
return result;
|
|
}
|
|
|
|
/// <summary>
|
|
/// 删除PDF单个文件
|
|
/// </summary>
|
|
/// <param name="id"></param>
|
|
/// <returns></returns>
|
|
[HttpDelete("{id:guid}")]
|
|
public async Task<IResponseOutput> DeleteReadingClinicalDataPDF(Guid id)
|
|
{
|
|
await _readingClinicalDataPDFRepository.DeleteFromQueryAsync(x => x.Id == id, true);
|
|
return ResponseOutput.Result(true);
|
|
}
|
|
|
|
|
|
}
|
|
}
|