781 lines
38 KiB
C#
781 lines
38 KiB
C#
using IRaCIS.Core.Domain.Share;
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using Microsoft.AspNetCore.Mvc;
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using IRaCIS.Core.Application.Service.Reading.Dto;
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using IRaCIS.Core.Infra.EFCore.Common;
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using IRaCIS.Core.Application.Contracts;
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using IRaCIS.Core.Application.Service.Inspection.DTO;
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using Panda.DynamicWebApi.Attributes;
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using Microsoft.Extensions.DependencyInjection;
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using System.Linq.Expressions;
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using IRaCIS.Core.Infrastructure;
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namespace IRaCIS.Application.Services
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{
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/// <summary>
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/// 阅片临床数据
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/// </summary>
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[ApiExplorerSettings(GroupName = "Reading")]
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public class ReadingClinicalDataService : BaseService, IReadingClinicalDataService
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{
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private readonly IRepository<ReadingClinicalData> _readingClinicalDataRepository;
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private readonly IRepository<ClinicalDataTrialSet> _clinicalDataTrialSetRepository;
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private readonly IRepository<VisitTask> _visitTaskRepository;
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private readonly IRepository<PreviousPDF> _previousPDFRepository;
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private readonly IRepository<SubjectVisit> _subjectVisitRepository;
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private readonly IRepository<PreviousHistory> _previousHistoryRepository;
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private readonly IRepository<PreviousOther> _previousOtherRepository;
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private readonly IRepository<PreviousSurgery> _previousSurgeryRepository;
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private readonly IRepository<ReadingQuestionCriterionTrial> _readingQuestionCriterionTrialRepository;
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private readonly IServiceProvider iServiceProvider;
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private readonly IRepository<Subject> _subjectRepository;
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private readonly IRepository<ReadModule> _readModuleRepository;
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private readonly IRepository<ReadingClinicalDataPDF> _readingClinicalDataPDFRepository;
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public ReadingClinicalDataService(IRepository<ReadingClinicalData> readingClinicalDataRepository,
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IRepository<ClinicalDataTrialSet> clinicalDataTrialSetRepository,
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IRepository<PreviousPDF> previousPDFRepository,
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IRepository<SubjectVisit> subjectVisitRepository,
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IRepository<PreviousHistory> previousHistoryRepository,
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IRepository<PreviousOther> previousOtherRepository,
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IRepository<PreviousSurgery> previousSurgeryRepository,
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IRepository<ReadingQuestionCriterionTrial> readingQuestionCriterionTrialRepository,
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IServiceProvider IServiceProvider,
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IRepository<Subject> subjectRepository,
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IRepository<ReadModule> readModuleRepository,
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IRepository<ReadingClinicalDataPDF> readingClinicalDataPDFRepository,
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IRepository<VisitTask> visitTaskRepository)
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{
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this._readingClinicalDataRepository = readingClinicalDataRepository;
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this._clinicalDataTrialSetRepository = clinicalDataTrialSetRepository;
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this._previousPDFRepository = previousPDFRepository;
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this._subjectVisitRepository = subjectVisitRepository;
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this._previousHistoryRepository = previousHistoryRepository;
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this._previousOtherRepository = previousOtherRepository;
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this._previousSurgeryRepository = previousSurgeryRepository;
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this._readingQuestionCriterionTrialRepository = readingQuestionCriterionTrialRepository;
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this.iServiceProvider = IServiceProvider;
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this._subjectRepository = subjectRepository;
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this._readModuleRepository = readModuleRepository;
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this._readingClinicalDataPDFRepository = readingClinicalDataPDFRepository;
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this._visitTaskRepository = visitTaskRepository;
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}
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#region 临床数据基本增删改
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/// <summary>
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/// 新增或者修改
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/// </summary>
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/// <param name="indto"></param>
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/// <returns></returns>
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[HttpPost]
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public async Task<IResponseOutput> AddOrUpdateReadingClinicalData(AddOrUpdateReadingClinicalDataDto indto)
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{
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var existsQuery = _readingClinicalDataRepository
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.WhereIf(indto.Id != null, x => x.Id != indto.Id)
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.Where(x => x.ClinicalDataTrialSetId == indto.ClinicalDataTrialSetId && x.ReadingId == indto.ReadingId);
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if (await existsQuery.AnyAsync())
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{
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return ResponseOutput.NotOk("存在同类型的临床数据");
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}
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var clinicalDataTrialSet = (await _clinicalDataTrialSetRepository.Where(x => x.Id == indto.ClinicalDataTrialSetId).FirstOrDefaultAsync()).IfNullThrowException();
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//subject 或者检查批次级别的 都是在检查批次传
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indto.IsVisit = clinicalDataTrialSet.ClinicalDataLevel == ClinicalLevel.Subject || clinicalDataTrialSet.ClinicalDataLevel == ClinicalLevel.SubjectVisit;
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if (indto.Id == null)
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{
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var entity = _mapper.Map<ReadingClinicalData>(indto);
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entity.ReadingClinicalDataPDFList = indto.AddFileList.Select(x => new ReadingClinicalDataPDF()
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{
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FileName = x.FileName,
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Path = x.Path,
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}).ToList();
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entity.ReadingClinicalDataState = ReadingClinicalDataStatus.HaveUploaded;
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entity.IsBlind = null;
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entity.IsComplete = null;
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entity.FileCount = entity.ReadingClinicalDataPDFList.Count();
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await _readingClinicalDataRepository.AddAsync(entity, true);
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var success = await _readingClinicalDataRepository.SaveChangesAsync();
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return ResponseOutput.Ok(entity.Id);
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}
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else
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{
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var entity = (await _readingClinicalDataRepository.Where(t => t.Id == indto.Id, true).FirstOrDefaultAsync()).IfNullThrowException();
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await _readingClinicalDataPDFRepository.BatchDeleteNoTrackingAsync(x => indto.DeleteFileIds.Contains(x.Id));
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var addFileList = indto.AddFileList.Select(x => new ReadingClinicalDataPDF()
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{
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FileName = x.FileName,
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Path = x.Path,
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ReadingClinicalDataId = entity.Id,
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}).ToList();
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_mapper.Map(indto, entity);
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//上传 或者删除了文件 核查状态需要重新确认
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if (indto.AddFileList.Count > 0 || indto.AddFileList.Count > 0)
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{
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entity.IsComplete = null;
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entity.IsBlind = null;
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}
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await _readingClinicalDataPDFRepository.AddRangeAsync(addFileList);
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await _readingClinicalDataPDFRepository.SaveChangesAsync();
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var fileCount = await _readingClinicalDataPDFRepository.Where(t => t.ReadingClinicalDataId == indto.Id).CountAsync();
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entity.ReadingClinicalDataState = ReadingClinicalDataStatus.HaveUploaded;
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entity.FileCount = fileCount;
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var success = await _readingClinicalDataRepository.SaveChangesAsync();
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return ResponseOutput.Ok(entity.Id);
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}
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}
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/// <summary>
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/// 删除
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/// </summary>
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/// <param name="id"></param>
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/// <returns></returns>
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[HttpDelete("{id:guid}")]
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public async Task<IResponseOutput> DeleteReadingClinicalData(Guid id)
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{
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await _readingClinicalDataRepository.DeleteFromQueryAsync(x => x.Id == id, true);
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await _readingClinicalDataPDFRepository.DeleteFromQueryAsync(x => x.ReadingClinicalDataId == id, true);
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return ResponseOutput.Result(true);
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}
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#endregion
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#region 临床数据IC 相关
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/// <summary>
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/// 获取IC上传的文件
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/// </summary>
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/// <param name="inDto"></param>
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/// <returns></returns>
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[HttpPost]
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public async Task<List<GetCRCClinicalDataOutDto>> GetCRCClinicalData(GetCRCClinicalDataInDto inDto)
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{
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if (_userInfo.UserTypeEnumInt == (int)UserTypeEnum.ClinicalResearchCoordinator)
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{
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await this.AddCRCClinicalData(inDto);
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}
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List<GetCRCClinicalDataOutDto> cRCClinicalDataList = await _readingClinicalDataRepository.Where(x => x.ReadingId == inDto.SubjectVisitId)
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.WhereIf(inDto.IsBaseline, x => x.ClinicalDataTrialSet.ClinicalDataLevel == ClinicalLevel.Subject || x.ClinicalDataTrialSet.ClinicalDataLevel == ClinicalLevel.SubjectVisit)
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.WhereIf(!inDto.IsBaseline, x => x.ClinicalDataTrialSet.ClinicalDataLevel == ClinicalLevel.SubjectVisit)
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.Where(x => x.ClinicalDataTrialSet.TrialId == inDto.TrialId && x.ClinicalDataTrialSet.UploadRole == UploadRole.IC)
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.Select(x => new GetCRCClinicalDataOutDto()
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{
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Id = x.Id,
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ClinicalDataSetName = x.ClinicalDataTrialSet.ClinicalDataSetName,
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ClinicalUploadType = x.ClinicalDataTrialSet.ClinicalUploadType,
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ClinicalDataTrialSetId = x.ClinicalDataTrialSet.Id,
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FileName = x.ClinicalDataTrialSet.FileName,
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UploadRole = x.ClinicalDataTrialSet.UploadRole,
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Path = x.ClinicalDataTrialSet.Path,
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IsBlind = x.IsBlind,
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IsComplete = x.IsComplete,
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PDFFileList = x.ReadingClinicalDataPDFList.Select(y => new GetFileDto()
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{
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Id = y.Id,
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FileName = y.FileName,
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Path = y.Path,
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CreateTime = y.CreateTime,
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}).ToList()
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}).ToListAsync();
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List<GetReadingClinicalDataListOutDto> clinicalData = (await this.GetReadingClinicalDataList(new GetReadingClinicalDataListIndto()
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{
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SubjectId = inDto.SubjectId,
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ReadingId = inDto.SubjectVisitId,
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TrialId = inDto.TrialId,
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})).Item1;
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var previousHistoryList = await _previousHistoryRepository.Where(x => x.SubjectVisitId == inDto.SubjectVisitId).ProjectTo<PreviousHistoryView>(_mapper.ConfigurationProvider).ToListAsync();
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var previousOtherList = await _previousOtherRepository.Where(x => x.SubjectVisitId == inDto.SubjectVisitId).ProjectTo<PreviousOtherView>(_mapper.ConfigurationProvider).ToListAsync();
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var previousSurgeryList = await _previousSurgeryRepository.Where(x => x.SubjectVisitId == inDto.SubjectVisitId).ProjectTo<PreviousSurgeryView>(_mapper.ConfigurationProvider).ToListAsync();
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foreach (var item in cRCClinicalDataList)
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{
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//item.PDFFileList = clinicalData.Where(y => y.ClinicalDataTrialSetId == item.ClinicalDataTrialSetId).SelectMany(x => x.FileList).ToList();
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item.ClinicalTableData = new ClinicalDataTable()
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{
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PreviousHistoryList = previousHistoryList.Where(x => x.ClinicalDataTrialSetId == item.ClinicalDataTrialSetId).ToList(),
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PreviousOtherList = previousOtherList.Where(x => x.ClinicalDataTrialSetId == item.ClinicalDataTrialSetId).ToList(),
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PreviousSurgeryList = previousSurgeryList.Where(x => x.ClinicalDataTrialSetId == item.ClinicalDataTrialSetId).ToList(),
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};
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}
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return cRCClinicalDataList;
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}
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/// <summary>
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/// 添加IC数据类型
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/// </summary>
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/// <returns></returns>
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private async Task AddCRCClinicalData(GetCRCClinicalDataInDto inDto)
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{
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var cRCClinicalDataIds = await _clinicalDataTrialSetRepository.Where(x => x.TrialId == inDto.TrialId && x.UploadRole == UploadRole.IC && x.IsConfirm)
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.WhereIf(inDto.IsBaseline, x => x.ClinicalDataLevel == ClinicalLevel.Subject || x.ClinicalDataLevel == ClinicalLevel.SubjectVisit)
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.WhereIf(!inDto.IsBaseline, x => x.ClinicalDataLevel == ClinicalLevel.SubjectVisit)
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.Select(x => x.Id).ToListAsync();
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var needAddIds = cRCClinicalDataIds.Where(x => _readingClinicalDataRepository.Where(y => y.ReadingId == inDto.SubjectVisitId && x == y.ClinicalDataTrialSetId).Count() == 0).ToList();
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List<ReadingClinicalData> readingClinicals = needAddIds.Select(x => new ReadingClinicalData()
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{
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ClinicalDataTrialSetId = x,
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IsVisit = true,
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SubjectId = inDto.SubjectId,
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ReadingId = inDto.SubjectVisitId,
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TrialId = inDto.TrialId
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}).ToList();
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await _readingClinicalDataRepository.AddRangeAsync(readingClinicals);
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await _readingClinicalDataRepository.SaveChangesAsync();
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}
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#endregion
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#region 临床数据签名 和确认
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/// <summary>
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/// 影像阅片临床数据签名
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/// </summary>
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// [HttpPost]
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public async Task<IResponseOutput> ReadClinicalDataSign(ReadingClinicalDataSignIndto inDto)
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{
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var data = await _readingClinicalDataRepository.FirstOrDefaultAsync(t => t.Id == inDto.ReadingClinicalDataId);
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if (data.ReadingClinicalDataState != ReadingClinicalDataStatus.HaveChecked)
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{
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throw new BusinessValidationFailedException("当前临床数据状态不是已核查状态，不允许签名！");
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}
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data.IsSign = true;
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data.ReadingClinicalDataState = ReadingClinicalDataStatus.HaveSigned;
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//await _readingClinicalDataRepository.UpdatePartialFromQueryAsync(x => x.Id == inDto.ReadingClinicalDataId, x => new ReadingClinicalData()
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//{
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// IsSign = true,
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// ReadingClinicalDataState = ReadingClinicalDataStatus.HaveSigned
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//});
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var result = await _readingClinicalDataRepository.SaveChangesAsync();
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var readingId = await _readingClinicalDataRepository.Where(x => x.Id == inDto.ReadingClinicalDataId).Select(x => x.ReadingId).FirstOrDefaultAsync();
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await this.iServiceProvider.GetService<IReadingImageTaskService>().AddOncologyTask(readingId);
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await DealVisiTaskClinicalDataSignedAsync(data.TrialId, data.SubjectId, data.ReadingId, data.IsVisit, inDto.TrialReadingCriterionId);
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return ResponseOutput.Result(result);
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}
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//处理 任务 临床数据是否签名
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private async Task DealVisiTaskClinicalDataSignedAsync(Guid trialId, Guid subjectId, Guid readingId, bool isVisit, Guid trialReadingCritrialId)
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{
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//获取确认的临床数据配置
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var trialClinicalDataSetList = _clinicalDataTrialSetRepository.Where(t => t.TrialId == trialId && t.IsConfirm).Include(t => t.TrialClinicalDataSetCriteriaList).ToList();
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//var criterionType = await _readingQuestionCriterionTrialRepository.Where(t => t.Id == trialReadingCritrialId).Select(t => t.CriterionType).FirstOrDefaultAsync();
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// 获取确认的项目标准 废弃 签名的时候 传递标准Id
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//var confirmedCtritrialList = _repository.Where<ReadingQuestionCriterionTrial>(t => t.TrialId == trialId && t.ReadingInfoSignTime != null).Select(t => new { t.Id, t.CriterionType }).ToList();
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var needSignCount = 0;
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var haveSignedCount = _readingClinicalDataRepository.Where(t => t.TrialId == trialId && t.IsSign && t.ReadingClinicalDataState == ReadingClinicalDataStatus.HaveSigned && t.ReadingId == readingId && t.ClinicalDataTrialSet.UploadRole == UploadRole.PM).Count();
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if (isVisit)
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{
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var isBaseLine = await _subjectVisitRepository.Where(t => t.Id == readingId).Select(t => t.IsBaseLine).FirstOrDefaultAsync();
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//判断是否基线
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if (isBaseLine)
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{
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//IC 的自动签名 不用管 只用处理PM 的就好
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needSignCount = trialClinicalDataSetList.Where(t => t.TrialClinicalDataSetCriteriaList.Any(c => c.TrialReadingCriterionId == trialReadingCritrialId) && (t.ClinicalDataLevel == ClinicalLevel.Subject || t.ClinicalDataLevel == ClinicalLevel.SubjectVisit) && t.UploadRole == UploadRole.PM).Count();
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}
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else
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{
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needSignCount = trialClinicalDataSetList.Where(t => t.TrialClinicalDataSetCriteriaList.Any(c => c.TrialReadingCriterionId == trialReadingCritrialId) && t.ClinicalDataLevel == ClinicalLevel.SubjectVisit && t.UploadRole == UploadRole.PM).Count();
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}
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//可能仅仅IC 基线 没有PM
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if (needSignCount == haveSignedCount /*&& needSignCount != 0*/)
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{
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//将该标准 该subject 该检查批次 任务临床数据状态变更
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await _visitTaskRepository.BatchUpdateNoTrackingAsync(t => t.TrialId == trialId && t.SubjectId == subjectId && t.TrialReadingCriterionId == trialReadingCritrialId && t.SourceSubjectVisitId == readingId, u => new VisitTask()
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{
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IsClinicalDataSign = true
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});
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}
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}
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else
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{
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//判断是影像学 还是肿瘤学阅片
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var readingSetType = await _readModuleRepository.Where(t => t.Id == readingId).Select(t => t.ReadingSetType).FirstOrDefaultAsync();
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//影像学
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if (readingSetType == ReadingSetType.ImageReading)
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{
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needSignCount = trialClinicalDataSetList.Where(t => t.TrialClinicalDataSetCriteriaList.Any(c => c.TrialReadingCriterionId == trialReadingCritrialId) && t.ClinicalDataLevel == ClinicalLevel.ImageRead).Count();
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}
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//肿瘤学
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else
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{
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needSignCount = trialClinicalDataSetList.Where(t => t.TrialClinicalDataSetCriteriaList.Any(c => c.TrialReadingCriterionId == trialReadingCritrialId) && t.ClinicalDataLevel == ClinicalLevel.OncologyRead).Count();
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}
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//可能仅仅IC 基线 没有PM
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if (needSignCount == haveSignedCount /*&& needSignCount != 0*/)
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{
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//将该标准 该subject 该阅片期|肿瘤学 任务临床数据状态变更
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await _visitTaskRepository.BatchUpdateNoTrackingAsync(t => t.TrialId == trialId && t.SubjectId == subjectId && t.TrialReadingCriterionId == trialReadingCritrialId && t.SouceReadModuleId == readingId, u => new VisitTask()
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{
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IsClinicalDataSign = true
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});
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}
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}
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Expression<Func<VisitTask, bool>> visitTaskLambda = x => x.TrialId == trialId && x.SubjectId == subjectId && x.TrialReadingCriterionId == trialReadingCritrialId;
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//维护 IsFrontTaskNeedSignButNotSign 在添加任务哪里用触发器也维护了
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var visitTaskIdQueryable = _visitTaskRepository.Where(visitTaskLambda) //该Subject 该标准的任务
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//小于自己任务号的任务 存在需要签名 但是没签名
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.Where(t => t.Subject.SubjectVisitTaskList.AsQueryable().Where(visitTaskLambda).Any(c => c.IsNeedClinicalDataSign == true && c.IsClinicalDataSign == false && c.VisitTaskNum < t.VisitTaskNum)
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&& t.IsFrontTaskNeedSignButNotSign == false )
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.Select(t => t.Id);
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await _visitTaskRepository.BatchUpdateNoTrackingAsync(t => visitTaskIdQueryable.Contains(t.Id), u => new VisitTask()
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{
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IsFrontTaskNeedSignButNotSign = true
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});
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var visitTaskIdQueryable2 = _visitTaskRepository.Where(visitTaskLambda) //该Subject 该标准的任务
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//小于自己任务号的任务 存在需要签名 但是没签名
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.Where(t => !t.Subject.SubjectVisitTaskList.AsQueryable().Where(visitTaskLambda).Any(c => c.IsNeedClinicalDataSign == true && c.IsClinicalDataSign == false && c.VisitTaskNum < t.VisitTaskNum)
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&& t.IsFrontTaskNeedSignButNotSign == true )
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.Select(t => t.Id);
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await _visitTaskRepository.BatchUpdateNoTrackingAsync(t => visitTaskIdQueryable2.Contains(t.Id), u => new VisitTask()
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{
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IsFrontTaskNeedSignButNotSign = false
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});
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}
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[HttpPut]
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public async Task<IResponseOutput> PMClinicalDataConfirm(PMClinicalDataConfirmCommand command)
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{
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await _readingClinicalDataRepository.UpdatePartialFromQueryAsync(t => t.Id == command.Id, u => new ReadingClinicalData()
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{
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IsBlind = command.IsBlind,
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IsComplete = command.IsComplete,
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ReadingClinicalDataState = ReadingClinicalDataStatus.HaveChecked
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});
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await _readingClinicalDataRepository.SaveChangesAsync();
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return ResponseOutput.Ok();
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}
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#endregion
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#region 临床数据相关查询
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/// <summary>
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/// 获取下拉菜单
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/// </summary>
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/// <param name="inDto"></param>
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/// <returns></returns>
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[HttpPost]
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public async Task<List<GetTrialClinicalDataSelectOutDto>> GetTrialClinicalDataSelect(GetTrialClinicalDataSelectIndto inDto)
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{
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var userTypes = new List<int>() {
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(int)UserTypeEnum.ProjectManager,
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(int)UserTypeEnum.SPM,
|
|
(int)UserTypeEnum.CPM,
|
|
(int)UserTypeEnum.IndependentReviewer,
|
|
};
|
|
|
|
|
|
|
|
if (userTypes.Contains(_userInfo.UserTypeEnumInt))
|
|
{
|
|
inDto.UploadRole = UploadRole.PM;
|
|
}
|
|
|
|
ReadModule readModule = null;
|
|
if (inDto.IsVisit == false)
|
|
{
|
|
readModule = await _readModuleRepository.Where(x => x.Id == inDto.ReadingId).FirstOrDefaultAsync();
|
|
}
|
|
|
|
Dictionary<ModuleTypeEnum, ClinicalLevel> keyValuePairs = new Dictionary<ModuleTypeEnum, ClinicalLevel>();
|
|
keyValuePairs.Add(ModuleTypeEnum.Global, ClinicalLevel.ImageRead);
|
|
keyValuePairs.Add(ModuleTypeEnum.Oncology, ClinicalLevel.OncologyRead);
|
|
|
|
|
|
|
|
|
|
|
|
var usedIdsQuery = _readingClinicalDataRepository.Where(x => x.ReadingId == inDto.ReadingId && x.Id != inDto.ReadingClinicalDataId).Select(x => x.ClinicalDataTrialSetId);
|
|
|
|
List<GetTrialClinicalDataSelectOutDto> clinicalList = await _clinicalDataTrialSetRepository.Where(x => x.TrialId == inDto.TrialId && x.IsConfirm)
|
|
.WhereIf(inDto.UploadRole != null, x => x.UploadRole == inDto.UploadRole)
|
|
.Where(x => !usedIdsQuery.Contains(x.Id))
|
|
|
|
|
|
|
|
.WhereIf(inDto.IsVisit && inDto.IsBaseLine, x => x.ClinicalDataLevel == ClinicalLevel.Subject || x.ClinicalDataLevel == ClinicalLevel.SubjectVisit)
|
|
.WhereIf(inDto.IsVisit && !inDto.IsBaseLine, x => x.ClinicalDataLevel == ClinicalLevel.SubjectVisit)
|
|
.WhereIf(!inDto.IsVisit, x => x.ClinicalDataLevel == ClinicalLevel.ImageRead || x.ClinicalDataLevel == ClinicalLevel.OncologyRead)
|
|
.WhereIf(readModule != null, x => x.ClinicalDataLevel == keyValuePairs[readModule.ModuleType])
|
|
.WhereIf(inDto.TrialReadingCriterionId!=null,x=>x.TrialClinicalDataSetCriteriaList.Any(y=>y.TrialReadingCriterionId== inDto.TrialReadingCriterionId))
|
|
//.WhereIf(criterion!=null,x=>x.CriterionEnumListStr.Contains($"|{(int)criterion.CriterionType}|"))
|
|
.Select(x => new GetTrialClinicalDataSelectOutDto()
|
|
{
|
|
ClinicalDataLevel = x.ClinicalDataLevel,
|
|
ClinicalDataSetName = x.ClinicalDataSetName,
|
|
ClinicalUploadType = x.ClinicalUploadType,
|
|
FileName = x.FileName,
|
|
Path = x.Path,
|
|
Id = x.Id,
|
|
CriterionEnumList = x.CriterionEnumList,
|
|
}).ToListAsync();
|
|
|
|
return clinicalList;
|
|
}
|
|
|
|
|
|
/// <summary>
|
|
/// 获取检查批次 阅片或任务临床数据
|
|
/// </summary>
|
|
/// <param name="inDto"></param>
|
|
/// <returns></returns>
|
|
[HttpPost]
|
|
public async Task<(List<GetReadingClinicalDataListOutDto>, object)> GetReadingOrTaskClinicalDataList(GetReadingOrTaskClinicalDataListInDto inDto)
|
|
{
|
|
var readingNameOrTaskBlindName = string.Empty;
|
|
if (inDto.ReadingId == null)
|
|
{
|
|
var visitTask = await _visitTaskRepository.FirstOrDefaultAsync(x => x.Id == inDto.VisitTaskId);
|
|
inDto.ReadingId = visitTask.SouceReadModuleId ?? visitTask.SourceSubjectVisitId;
|
|
readingNameOrTaskBlindName = visitTask.TaskBlindName;
|
|
}
|
|
|
|
if (readingNameOrTaskBlindName.IsNullOrEmpty())
|
|
{
|
|
readingNameOrTaskBlindName = await _subjectVisitRepository.Where(x => x.Id == inDto.ReadingId).Select(x => x.VisitName).FirstOrDefaultAsync();
|
|
if (readingNameOrTaskBlindName.IsNullOrEmpty())
|
|
{
|
|
readingNameOrTaskBlindName = await _readModuleRepository.Where(x => x.Id == inDto.ReadingId).Select(x => x.ModuleName).FirstOrDefaultAsync();
|
|
|
|
}
|
|
}
|
|
inDto.SelectIsSign = false;
|
|
var result = await GetClinicalDataList(inDto);
|
|
|
|
var readingIds = result.Select(x => x.ReadingId).ToList();
|
|
|
|
var previousHistoryList = await _previousHistoryRepository.Where(x => readingIds.Contains(x.SubjectVisitId)).ProjectTo<PreviousHistoryView>(_mapper.ConfigurationProvider).ToListAsync();
|
|
var previousOtherList = await _previousOtherRepository.Where(x => readingIds.Contains(x.SubjectVisitId)).ProjectTo<PreviousOtherView>(_mapper.ConfigurationProvider).ToListAsync();
|
|
var previousSurgeryList = await _previousSurgeryRepository.Where(x => readingIds.Contains(x.SubjectVisitId)).ProjectTo<PreviousSurgeryView>(_mapper.ConfigurationProvider).ToListAsync();
|
|
foreach (var item in result)
|
|
{
|
|
item.ClinicalTableData = new ClinicalDataTable()
|
|
{
|
|
PreviousHistoryList = previousHistoryList.Where(x => x.ClinicalDataTrialSetId == item.ClinicalDataTrialSetId).ToList(),
|
|
PreviousOtherList = previousOtherList.Where(x => x.ClinicalDataTrialSetId == item.ClinicalDataTrialSetId).ToList(),
|
|
PreviousSurgeryList = previousSurgeryList.Where(x => x.ClinicalDataTrialSetId == item.ClinicalDataTrialSetId).ToList(),
|
|
};
|
|
|
|
}
|
|
|
|
Dictionary<ClinicalLevel, int> keys = new Dictionary<ClinicalLevel, int>() {
|
|
{ClinicalLevel.SubjectVisit,0 },
|
|
{ClinicalLevel.ImageRead,2 },
|
|
{ClinicalLevel.OncologyRead,3 },
|
|
{ClinicalLevel.Subject,4 },
|
|
};
|
|
|
|
result = result.OrderBy(x => keys[x.ClinicalDataLevel]).ToList();
|
|
|
|
return (result, new
|
|
{
|
|
SubjectCode = await _subjectRepository.Where(x => x.Id == inDto.SubjectId).Select(x => x.Code).FirstOrDefaultAsync(),
|
|
ReadingNameOrTaskBlindName = readingNameOrTaskBlindName,
|
|
});
|
|
}
|
|
|
|
|
|
/// <summary>
|
|
/// 获取阅片临床数据列表
|
|
/// </summary>
|
|
/// <param name="inDto"></param>
|
|
/// <returns></returns>
|
|
[HttpPost]
|
|
public async Task<(List<GetReadingClinicalDataListOutDto>, object)> GetReadingClinicalDataList(GetReadingClinicalDataListIndto inDto)
|
|
{
|
|
var getTrialClinicalDataSelectIndto = new GetTrialClinicalDataSelectIndto()
|
|
{
|
|
ReadingId = inDto.ReadingId,
|
|
TrialId = inDto.TrialId,
|
|
IsBaseLine = inDto.IsBaseLine,
|
|
SubjectId = inDto.SubjectId,
|
|
IsVisit = inDto.IsVisit,
|
|
TrialReadingCriterionId = inDto.TrialReadingCriterionId
|
|
};
|
|
|
|
var clinicalDataList = await this.GetTrialClinicalDataSelect(getTrialClinicalDataSelectIndto);
|
|
|
|
if (_userInfo.UserTypeEnumInt == (int)UserTypeEnum.ClinicalResearchCoordinator || _userInfo.UserTypeEnumInt == (int)UserTypeEnum.IQC)
|
|
{
|
|
inDto.UploadRole = UploadRole.IC;
|
|
}
|
|
var isBaseLine = await _subjectVisitRepository.AnyAsync(x => x.Id == inDto.ReadingId && x.IsBaseLine);
|
|
|
|
|
|
var result = await this.GetReadingClinicalList(inDto);
|
|
var readingIds = result.Select(x => x.ReadingId).ToList();
|
|
|
|
var previousHistoryList = await _previousHistoryRepository.Where(x => readingIds.Contains(x.SubjectVisitId)).ProjectTo<PreviousHistoryView>(_mapper.ConfigurationProvider).ToListAsync();
|
|
var previousOtherList = await _previousOtherRepository.Where(x => readingIds.Contains(x.SubjectVisitId)).ProjectTo<PreviousOtherView>(_mapper.ConfigurationProvider).ToListAsync();
|
|
var previousSurgeryList = await _previousSurgeryRepository.Where(x => readingIds.Contains(x.SubjectVisitId)).ProjectTo<PreviousSurgeryView>(_mapper.ConfigurationProvider).ToListAsync();
|
|
foreach (var item in result)
|
|
{
|
|
item.ClinicalTableData = new ClinicalDataTable()
|
|
{
|
|
PreviousHistoryList = previousHistoryList.Where(x => x.ClinicalDataTrialSetId == item.ClinicalDataTrialSetId).ToList(),
|
|
PreviousOtherList = previousOtherList.Where(x => x.ClinicalDataTrialSetId == item.ClinicalDataTrialSetId).ToList(),
|
|
PreviousSurgeryList = previousSurgeryList.Where(x => x.ClinicalDataTrialSetId == item.ClinicalDataTrialSetId).ToList(),
|
|
};
|
|
|
|
}
|
|
|
|
return (result, new
|
|
{
|
|
IsCanAddClinicalData = clinicalDataList.Count() > 0,
|
|
});
|
|
}
|
|
|
|
[NonDynamicMethod]
|
|
public async Task<List<GetReadingClinicalDataListOutDto>> GetClinicalDataList(GetReadingOrTaskClinicalDataListInDto inDto)
|
|
{
|
|
|
|
if (inDto.ReadingId == null)
|
|
{
|
|
var visitTask = await _visitTaskRepository.FirstOrDefaultAsync(x => x.Id == inDto.VisitTaskId);
|
|
inDto.ReadingId = visitTask.SouceReadModuleId ?? visitTask.SourceSubjectVisitId;
|
|
}
|
|
|
|
|
|
var resultQuery = _readingClinicalDataRepository.Where(x => x.SubjectId == inDto.SubjectId)
|
|
.WhereIf(inDto.ReadingClinicalDataId != null, x => x.Id == inDto.ReadingClinicalDataId)
|
|
.WhereIf(inDto.SelectIsSign, x => x.IsSign == true)
|
|
.Where(x => x.ReadingId == inDto.ReadingId || (x.SubjectId == inDto.SubjectId && x.ClinicalDataTrialSet.ClinicalDataLevel == ClinicalLevel.Subject))
|
|
.Select(x => new GetReadingClinicalDataListOutDto()
|
|
{
|
|
ClinicalDataLevel = x.ClinicalDataTrialSet.ClinicalDataLevel,
|
|
SubjectId = x.SubjectId,
|
|
ReadingId = x.ReadingId,
|
|
ClinicalDataSetName = x.ClinicalDataTrialSet.ClinicalDataSetName,
|
|
ClinicalDataTrialSetId = x.ClinicalDataTrialSetId,
|
|
IsSign = x.IsSign,
|
|
ClinicalUploadType = x.ClinicalDataTrialSet.ClinicalUploadType,
|
|
CriterionEnumList = x.ClinicalDataTrialSet.CriterionEnumList,
|
|
TrialClinicalDataSetCriteriaList=x.ClinicalDataTrialSet.TrialClinicalDataSetCriteriaList,
|
|
Id = x.Id,
|
|
UploadRole = x.ClinicalDataTrialSet.UploadRole,
|
|
IsCRCUpload = x.ClinicalDataTrialSet.UploadRole == UploadRole.IC,
|
|
FileList = x.ReadingClinicalDataPDFList.Select(y => new GetFileDto()
|
|
{
|
|
Id = y.Id,
|
|
FileName = y.FileName,
|
|
Path = y.Path,
|
|
CreateTime = y.CreateTime,
|
|
}).ToList()
|
|
});
|
|
|
|
|
|
var result = await resultQuery.ToListAsync();
|
|
// 根据标准
|
|
if (inDto.VisitTaskId != null)
|
|
{
|
|
var visitTaskInfo = await _visitTaskRepository.FirstOrDefaultAsync(x => x.Id == inDto.VisitTaskId);
|
|
|
|
result = result.Where(x => x.TrialClinicalDataSetCriteriaList.Any(z=>z.TrialReadingCriterionId==visitTaskInfo.TrialReadingCriterionId)).ToList();
|
|
}
|
|
|
|
|
|
result = result.Where(x => !(x.ClinicalUploadType == ClinicalUploadType.PDF && x.FileList.Count() == 0)).ToList();
|
|
// 需要排除表格为空的数据
|
|
|
|
|
|
var readingIds = result.Select(x => x.ReadingId).ToList();
|
|
|
|
var tablecount = (await _previousHistoryRepository.Where(x => readingIds.Contains(x.SubjectVisitId)).CountAsync()) +
|
|
(await _previousOtherRepository.Where(x => readingIds.Contains(x.SubjectVisitId)).CountAsync()) +
|
|
(await _previousSurgeryRepository.Where(x => readingIds.Contains(x.SubjectVisitId)).CountAsync());
|
|
|
|
if (tablecount == 0)
|
|
{
|
|
result = result.Where(x => x.ClinicalUploadType != ClinicalUploadType.Table).ToList();
|
|
}
|
|
|
|
return result;
|
|
}
|
|
|
|
|
|
/// <summary>
|
|
/// 获取临床数据集合
|
|
/// </summary>
|
|
/// <returns></returns>
|
|
[NonDynamicMethod]
|
|
public async Task<List<GetReadingClinicalDataListOutDto>> GetReadingClinicalList(GetReadingClinicalDataListIndto inDto)
|
|
{
|
|
|
|
//var criterionType = await _readingQuestionCriterionTrialRepository.Where(x => x.Id == inDto.TrialReadingCriterionId).Select(x => x.CriterionType).FirstNotNullAsync();
|
|
|
|
|
|
var resultQuery = _readingClinicalDataRepository.Where(x => x.SubjectId == inDto.SubjectId)
|
|
.Where(x => x.ReadingId == inDto.ReadingId || (x.SubjectId == inDto.SubjectId && x.ClinicalDataTrialSet.ClinicalDataLevel == ClinicalLevel.Subject))
|
|
//.WhereIf(inDto.UploadRole == UploadRole.IC, x => x.ClinicalDataTrialSet.UploadRole == UploadRole.IC)
|
|
|
|
.Where(x => x.ClinicalDataTrialSet.TrialClinicalDataSetCriteriaList.Any(t=>t.TrialReadingCriterionId==inDto.TrialReadingCriterionId))
|
|
.Select(x => new GetReadingClinicalDataListOutDto()
|
|
{
|
|
ClinicalDataLevel = x.ClinicalDataTrialSet.ClinicalDataLevel,
|
|
SubjectId = x.SubjectId,
|
|
ReadingId = x.ReadingId,
|
|
ClinicalDataSetName = x.ClinicalDataTrialSet.ClinicalDataSetName,
|
|
ClinicalDataTrialSetId = x.ClinicalDataTrialSetId,
|
|
IsSign = x.IsSign,
|
|
ClinicalUploadType = x.ClinicalDataTrialSet.ClinicalUploadType,
|
|
Id = x.Id,
|
|
UploadRole = x.ClinicalDataTrialSet.UploadRole,
|
|
IsCRCUpload = x.ClinicalDataTrialSet.UploadRole == UploadRole.IC,
|
|
IsBlind = x.IsBlind,
|
|
IsComplete = x.IsComplete,
|
|
FileCount = x.FileCount,
|
|
|
|
ReadingClinicalDataState = x.ReadingClinicalDataState,
|
|
|
|
FileList = x.ReadingClinicalDataPDFList.Select(y => new GetFileDto()
|
|
{
|
|
Id = y.Id,
|
|
FileName = y.FileName,
|
|
Path = y.Path,
|
|
CreateTime = y.CreateTime,
|
|
}).ToList()
|
|
});
|
|
|
|
var result = await resultQuery.ToListAsync();
|
|
//result = result.Where(x => !(x.UploadRole == UploadRole.IC && x.ClinicalUploadType == ClinicalUploadType.PDF && x.FileList.Count() == 0)).ToList();
|
|
return result;
|
|
}
|
|
|
|
#endregion
|
|
|
|
|
|
#region 阅片临床数据PDF
|
|
|
|
/// <summary>
|
|
/// 获取单个阅片临床数据的所有文件
|
|
/// </summary>
|
|
/// <param name="inDto"></param>
|
|
/// <returns></returns>
|
|
[HttpPost]
|
|
public async Task<PageOutput<GetReadingClinicalDataPDFListOutDto>> GetReadingClinicalDataPDFList(GetReadingClinicalDataPDFListIndto inDto)
|
|
{
|
|
|
|
var result = await _readingClinicalDataPDFRepository.Where(x => x.ReadingClinicalDataId == inDto.ReadingClinicalDataId).ProjectTo<GetReadingClinicalDataPDFListOutDto>(_mapper.ConfigurationProvider)
|
|
.ToPagedListAsync(inDto.PageIndex, inDto.PageSize, inDto.SortField == null ? nameof(GetReadingClinicalDataPDFListOutDto.FileName) : inDto.SortField,
|
|
inDto.Asc);
|
|
return result;
|
|
}
|
|
|
|
/// <summary>
|
|
/// 删除PDF单个文件
|
|
/// </summary>
|
|
/// <param name="id"></param>
|
|
/// <returns></returns>
|
|
[HttpDelete("{id:guid}")]
|
|
public async Task<IResponseOutput> DeleteReadingClinicalDataPDF(Guid id)
|
|
{
|
|
var pdf = await _readingClinicalDataPDFRepository.FirstOrDefaultAsync(t => t.Id == id);
|
|
|
|
await _readingClinicalDataPDFRepository.DeleteAsync(pdf, true);
|
|
|
|
var fileCount = await _readingClinicalDataPDFRepository.Where(t => t.ReadingClinicalDataId == pdf.ReadingClinicalDataId).CountAsync();
|
|
|
|
await _readingClinicalDataRepository.UpdatePartialFromQueryAsync(pdf.ReadingClinicalDataId, c => new ReadingClinicalData() { FileCount = fileCount }, true);
|
|
|
|
return ResponseOutput.Result(true);
|
|
}
|
|
|
|
#endregion
|
|
|
|
|
|
///// <summary>
|
|
///// 设置临床数据是否盲化
|
|
///// </summary>
|
|
///// <returns></returns>
|
|
//[HttpPost]
|
|
//public async Task<IResponseOutput> SetReadingClinicalDataIsBlind(SetReadingClinicalDataIsBlind inDto)
|
|
//{
|
|
// await _readingClinicalDataRepository.UpdatePartialFromQueryAsync(inDto.Id, x=>new ReadingClinicalData() {
|
|
// IsBlind=inDto.IsBlind,
|
|
// });
|
|
// return ResponseOutput.Ok(await _readingClinicalDataRepository.SaveChangesAsync());
|
|
//}
|
|
|
|
}
|
|
}
|