531 lines
24 KiB
C#
531 lines
24 KiB
C#
using IRaCIS.Core.Application.Contracts;
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using IRaCIS.Core.Domain.Share;
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using Microsoft.AspNetCore.Mvc;
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using Microsoft.AspNetCore.Authorization;
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using IRaCIS.Core.Application.Services;
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using EasyCaching.Core;
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using System.Linq.Expressions;
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using IRaCIS.Core.Application.Helper;
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namespace IRaCIS.Core.Application.Service.ImageAndDoc
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{
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[ApiExplorerSettings(GroupName = "Image")]
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public class StudyService : BaseService, IStudyService
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{
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private readonly IEasyCachingProvider _provider;
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private readonly IRepository<SubjectVisit> _subjectVisitRepository;
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private readonly IRepository<DicomInstance> _dicomInstanceRepository;
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private readonly IRepository<DicomSeries> _dicomSeriesRepository;
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public StudyService( IEasyCachingProvider provider
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, IRepository<SubjectVisit> subjectVisitRepository,
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IRepository<DicomInstance> dicomInstanceRepository,
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IRepository<DicomSeries> dicomSeriesRepository)
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{
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_provider = provider;
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_subjectVisitRepository = subjectVisitRepository;
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_dicomInstanceRepository = dicomInstanceRepository;
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_dicomSeriesRepository = dicomSeriesRepository;
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}
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[HttpPost]
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public async Task<PageOutput<UnionStudyViewModel>> GetDicomAndNoneDicomStudyList(StudyQuery studyQuery)
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{
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var svExpression = QCCommon.GetDicomStudySubjectVisitFilter(studyQuery.VisitPlanArray);
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var dicomStudyQuery = _repository.Where<DicomStudy>(t => t.TrialId == studyQuery.TrialId)
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.WhereIf(_userInfo.UserTypeEnumInt == (int)UserTypeEnum.ClinicalResearchCoordinator || _userInfo.UserTypeEnumInt == (int)UserTypeEnum.CRA, t => t.TrialSite.CRCUserList.Any(t => t.UserId == _userInfo.Id))
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//.WhereIf(!string.IsNullOrEmpty(studyQuery.VisitPlanInfo), studyQuery.VisitPlanInfo.Contains('.') ? t => t.SubjectVisit.VisitNum.ToString().Contains(".") : t => t.SubjectVisit.VisitNum == decimal.Parse(studyQuery.VisitPlanInfo))
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.WhereIf(studyQuery.VisitPlanArray != null && studyQuery.VisitPlanArray?.Length > 0, svExpression)
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.WhereIf(!string.IsNullOrWhiteSpace(studyQuery.SubjectInfo), t => t.Subject.Code.Contains(studyQuery.SubjectInfo))
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.Select(t => new UnionStudyViewModel()
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{
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TrialId = t.TrialId,
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SiteId = t.SiteId,
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SubjectId = t.SubjectId,
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SubjectVisitId = t.SubjectVisitId,
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VisitName = t.SubjectVisit.VisitName,
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VisitNum = t.SubjectVisit.VisitNum,
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IsDicom = true,
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SubjectCode = t.Subject.Code,
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Id = t.Id,
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Bodypart = t.BodyPartExamined,
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Modalities = t.Modalities,
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Count = t.SeriesCount,
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StudyCode = t.StudyCode,
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//DicomStudyCode = t.StudyCode,
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//NoneDicomCode = 0,
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StudyTime = t.StudyTime,
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TrialSiteAliasName = t.TrialSite.TrialSiteAliasName,
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TrialSiteCode = t.TrialSite.TrialSiteCode,
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Uploader = t.Uploader.UserName,
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UploadTime = t.CreateTime
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});
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//.ProjectTo<UnionStudyViewDodel>(_mapper.ConfigurationProvider);
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var svExpression2 = QCCommon.GetNoneDicomStudySubjectVisitFilter(studyQuery.VisitPlanArray);
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var nodeDicomStudyQuery = _repository.Where<NoneDicomStudy>(t => t.TrialId == studyQuery.TrialId)
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.WhereIf(_userInfo.UserTypeEnumInt == (int)UserTypeEnum.ClinicalResearchCoordinator || _userInfo.UserTypeEnumInt == (int)UserTypeEnum.CRA, t => t.TrialSite.CRCUserList.Any(t => t.UserId == _userInfo.Id))
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//.WhereIf(!string.IsNullOrEmpty(studyQuery.VisitPlanInfo), studyQuery.VisitPlanInfo.Contains('.') ? t => t.SubjectVisit.VisitNum.ToString().Contains(".") : t => t.SubjectVisit.VisitNum == decimal.Parse(studyQuery.VisitPlanInfo))
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.WhereIf(studyQuery.VisitPlanArray != null && studyQuery.VisitPlanArray?.Length > 0, svExpression2)
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.WhereIf(!string.IsNullOrWhiteSpace(studyQuery.SubjectInfo), t => t.Subject.Code.Contains(studyQuery.SubjectInfo))
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.Select(t => new UnionStudyViewModel()
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{
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TrialId = t.TrialId,
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SiteId = t.SiteId,
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SubjectId = t.SubjectId,
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SubjectVisitId = t.SubjectVisitId,
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VisitName = t.SubjectVisit.VisitName,
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VisitNum = t.SubjectVisit.VisitNum,
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IsDicom = false,
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SubjectCode = t.Subject.Code,
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Id = t.Id,
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Bodypart = t.BodyPart,
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Modalities = t.Modality,
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Count = t.NoneDicomFileList.Count(),
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StudyCode = t.StudyCode,
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//NoneDicomCode = t.Code,
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//DicomStudyCode = string.Empty,
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StudyTime = t.ImageDate,
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TrialSiteAliasName = t.TrialSite.TrialSiteAliasName,
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TrialSiteCode = t.TrialSite.TrialSiteCode,
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Uploader = t.CreateUser.UserName,
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UploadTime = t.CreateTime
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});
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//.ProjectTo<UnionStudyViewDodel>(_mapper.ConfigurationProvider);
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var unionQuery = dicomStudyQuery.Union(nodeDicomStudyQuery)
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.WhereIf(studyQuery.SubjectId != null, t => t.SubjectId == studyQuery.SubjectId)
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.WhereIf(studyQuery.SubjectVisitId != null, t => t.SubjectId == studyQuery.SubjectVisitId)
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.WhereIf(studyQuery.SiteId != null, t => t.SiteId == studyQuery.SiteId);
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return await unionQuery.ToPagedListAsync(studyQuery.PageIndex, studyQuery.PageSize, studyQuery.SortField, studyQuery.Asc);
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}
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[HttpPost]
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public async Task<PageOutput<UnionStudyMonitorModel>> GetDicomAndNoneDicomStudyMonitorList(StudyQuery studyQuery)
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{
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var svExpression = QCCommon.GetStudyMonitorSubjectVisitFilter(studyQuery.VisitPlanArray);
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var StudyMonitorQuery = _repository.Where<StudyMonitor>(t => t.TrialId == studyQuery.TrialId)
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.WhereIf(_userInfo.UserTypeEnumInt == (int)UserTypeEnum.ClinicalResearchCoordinator || _userInfo.UserTypeEnumInt == (int)UserTypeEnum.CRA, t => t.TrialSite.CRCUserList.Any(t => t.UserId == _userInfo.Id))
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//.WhereIf(!string.IsNullOrEmpty(studyQuery.VisitPlanInfo), studyQuery.VisitPlanInfo.Contains('.') ? t => t.SubjectVisit.VisitNum.ToString().Contains(".") : t => t.SubjectVisit.VisitNum == decimal.Parse(studyQuery.VisitPlanInfo))
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.WhereIf(studyQuery.VisitPlanArray != null && studyQuery.VisitPlanArray?.Length > 0, svExpression)
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.WhereIf(!string.IsNullOrWhiteSpace(studyQuery.SubjectInfo), t => t.Subject.Code.Contains(studyQuery.SubjectInfo))
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.WhereIf(studyQuery.SubjectId != null, t => t.SubjectId == studyQuery.SubjectId)
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.WhereIf(studyQuery.SubjectVisitId != null, t => t.SubjectId == studyQuery.SubjectVisitId)
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.WhereIf(studyQuery.SiteId != null, t => t.SiteId == studyQuery.SiteId)
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.Select(t => new UnionStudyMonitorModel()
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{
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TrialId = t.TrialId,
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SiteId = t.SiteId,
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SubjectId = t.SubjectId,
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SubjectVisitId = t.SubjectVisitId,
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VisitName = t.SubjectVisit.VisitName,
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VisitNum = t.SubjectVisit.VisitNum,
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SubjectCode = t.Subject.Code,
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TrialSiteAliasName = t.TrialSite.TrialSiteAliasName,
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TrialSiteCode = t.TrialSite.TrialSiteCode,
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Uploader = t.Uploader.UserName,
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UploadTime = t.CreateTime,
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IP = t.IP,
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FileCount = t.FileCount,
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FileSize = t.FileSize,
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UploadFinishedTime = t.UploadFinishedTime,
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UploadStartTime = t.UploadStartTime,
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TotalMillisecondsInterval = t.TotalMillisecondsInterval,
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IsDicomReUpload = t.IsDicomReUpload,
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StudyId = t.Id,
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IsDicom = t.IsDicom,
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StudyCode = t.StudyCode
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});
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return await StudyMonitorQuery.ToPagedListAsync(studyQuery.PageIndex, studyQuery.PageSize, string.IsNullOrEmpty(studyQuery.SortField) ? "UploadTime" : studyQuery.SortField, studyQuery.Asc);
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#region 冗余查询
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//var dicomStudyQuery = _repository.Where<StudyMonitor>(t => t.TrialId == studyQuery.TrialId && t.IsDicom)
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// .WhereIf(_userInfo.UserTypeEnumInt == (int)UserTypeEnum.ClinicalResearchCoordinator, t => t.TrialSite.CRCUserList.Any(t => t.UserId == _userInfo.Id))
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// .WhereIf(!string.IsNullOrEmpty(studyQuery.VisitPlanInfo), studyQuery.VisitPlanInfo.Contains('.') ? t => t.SubjectVisit.VisitNum.ToString().Contains(".") : t => t.SubjectVisit.VisitNum == decimal.Parse(studyQuery.VisitPlanInfo))
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// .WhereIf(!string.IsNullOrWhiteSpace(studyQuery.SubjectInfo), t => t.Subject.Code.Contains(studyQuery.SubjectInfo))
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// .Select(t => new UnionStudyMonitorModel()
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// {
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// TrialId = t.TrialId,
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// SiteId = t.SiteId,
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// SubjectId = t.SubjectId,
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// SubjectVisitId = t.SubjectVisitId,
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// VisitName = t.SubjectVisit.VisitName,
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// VisitNum = t.SubjectVisit.VisitNum,
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// SubjectCode = t.Subject.Code,
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// TrialSiteAliasName = t.TrialSite.TrialSiteAliasName,
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// TrialSiteCode = t.TrialSite.TrialSiteCode,
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// Uploader = t.Uploader.FullName,
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// UploadTime = t.CreateTime,
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// IP = t.IP,
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// FileCount = t.FileCount,
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// FileSize = t.FileSize,
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// UploadFinishedTime = t.UploadFinishedTime,
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// UploadStartTime = t.UploadStartTime,
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// TotalMillisecondsInterval = t.TotalMillisecondsInterval,
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// IsDicomReUpload = t.IsDicomReUpload,
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// StudyId = t.Id,
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// IsDicom = t.IsDicom,
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// StudyCode = t.DicomStudy.StudyCode
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// //DicomStudyCode = t.DicomStudy.StudyCode,
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// //NoneDicomCode = 0,
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// });
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////.ProjectTo<UnionStudyViewDodel>(_mapper.ConfigurationProvider);
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//var nodeDicomStudyQuery = _repository.Where<StudyMonitor>(t => t.TrialId == studyQuery.TrialId && t.IsDicom == false)
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// .WhereIf(_userInfo.UserTypeEnumInt == (int)UserTypeEnum.ClinicalResearchCoordinator, t => t.TrialSite.CRCUserList.Any(t => t.UserId == _userInfo.Id))
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// .WhereIf(!string.IsNullOrEmpty(studyQuery.VisitPlanInfo), studyQuery.VisitPlanInfo.Contains('.') ? t => t.SubjectVisit.VisitNum.ToString().Contains(".") : t => t.SubjectVisit.VisitNum == decimal.Parse(studyQuery.VisitPlanInfo))
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// .WhereIf(!string.IsNullOrWhiteSpace(studyQuery.SubjectInfo), t => t.Subject.Code.Contains(studyQuery.SubjectInfo))
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// .Select(t => new UnionStudyMonitorModel()
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// {
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// TrialId = t.TrialId,
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// SiteId = t.SiteId,
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// SubjectId = t.SubjectId,
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// SubjectVisitId = t.SubjectVisitId,
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// VisitName = t.SubjectVisit.VisitName,
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// VisitNum = t.SubjectVisit.VisitNum,
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// SubjectCode = t.Subject.Code,
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// TrialSiteAliasName = t.TrialSite.TrialSiteAliasName,
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// TrialSiteCode = t.TrialSite.TrialSiteCode,
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// Uploader = t.Uploader.FullName,
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// UploadTime = t.CreateTime,
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// IP = t.IP,
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// FileCount = t.FileCount,
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// FileSize = t.FileSize,
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// UploadFinishedTime = t.UploadFinishedTime,
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// UploadStartTime = t.UploadStartTime,
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// TotalMillisecondsInterval = t.TotalMillisecondsInterval,
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// IsDicomReUpload = t.IsDicomReUpload,
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// StudyId = t.Id,
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// IsDicom = t.IsDicom,
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// StudyCode = t.NoneDicomStudy.StudyCode
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// //DicomStudyCode = string.Empty,
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// //NoneDicomCode = t.NoneDicomStudy.Code,
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// });
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////.ProjectTo<UnionStudyViewDodel>(_mapper.ConfigurationProvider);
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//var unionQuery = dicomStudyQuery.Union(nodeDicomStudyQuery)
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// .WhereIf(studyQuery.SubjectId != null, t => t.SubjectId == studyQuery.SubjectId)
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// .WhereIf(studyQuery.SubjectVisitId != null, t => t.SubjectId == studyQuery.SubjectVisitId)
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// .WhereIf(studyQuery.SiteId != null, t => t.SiteId == studyQuery.SiteId);
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//return await unionQuery.ToPagedListAsync(studyQuery.PageIndex, studyQuery.PageSize, string.IsNullOrEmpty(studyQuery.SortField) ? "UploadTime" : studyQuery.SortField, studyQuery.Asc);
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#endregion
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}
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/// <summary> 指定资源Id，渲染Dicom检查的Jpeg预览图像 </summary>
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/// <param name="studyId"> Dicom检查的Id </param>
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[HttpGet("{studyId:guid}")]
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public async Task<FileContentResult> Preview(Guid studyId)
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{
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string path = String.Empty;
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DicomInstance dicomInstance = await _repository.FirstOrDefaultAsync<DicomInstance>(s => s.StudyId == studyId);
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if (dicomInstance != null)
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{
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DicomStudy dicomStudy = await _repository.FirstOrDefaultAsync<DicomStudy>(s => s.Id == dicomInstance.StudyId);
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if (dicomStudy != null)
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{
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path = FileStoreHelper.GetDicomInstanceFilePath(_hostEnvironment, dicomStudy.TrialId, dicomStudy.SiteId, dicomStudy.SubjectId, dicomStudy.SubjectVisitId, dicomStudy.Id, dicomInstance.Id);
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}
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}
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using (var sw = ImageHelper.RenderPreviewJpeg(path))
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{
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var bytes = new byte[sw.Length];
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sw.Read(bytes, 0, bytes.Length);
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sw.Close();
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return new FileContentResult(bytes, "image/jpeg");
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}
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}
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/// <summary>
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/// 获取某个检查的关联检查列表（该受试者在这个想项目下的所有检查）
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/// 点击检查检查列表中的一个检查获取对应的序列列表（调用之前的接口：/series/list/，根据StudyId，获取访视的序列列表）
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/// </summary>
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/// <returns></returns>
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[HttpGet("{subjectVisitId:guid}")]
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[AllowAnonymous]
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public IResponseOutput<List<RelationStudyDTO>> GetAllRelationStudyList(Guid subjectVisitId)
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{
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#region 废弃
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//var studylist = _studyRepository.Where(u => u.SubjectVisitId == subjectVisitId && u.IsDeleted == false).Select(t => new { StudyId = t.Id, t.SubjectId, t.TrialId }).ToList();
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//var subjectId = studylist.FirstOrDefault().SubjectId;
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//var trialId = studylist.FirstOrDefault().TrialId;
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//var studyIds = studylist.Select(t => t.StudyId).ToList();
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//var query = from studyItem in _studyRepository.Where(u => u.SubjectId == subjectId
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// && u.TrialId == trialId && u.IsDeleted == false &&
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// !studyIds.Contains(u.Id)
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// /* && u.Status != (int)StudyStatus.Abandon*/)
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// join visitItem in _subjectVisitRepository.AsQueryable()
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// on studyItem.SubjectVisitId equals visitItem.Id
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// select new RelationStudyDTO
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// {
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// StudyId = studyItem.Id,
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// StudyCode = studyItem.StudyCode,
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// VisitName = visitItem.VisitName,
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// Modalities = studyItem.Modalities,
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// Description = studyItem.Description,
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// SeriesCount = studyItem.SeriesCount
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// };
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#endregion
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var studyInfo = _repository.Where<DicomStudy>(u => u.SubjectVisitId == subjectVisitId).Select(t => new { t.SubjectId, t.TrialId }).FirstOrDefault().IfNullThrowException();
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var query = _repository.Where<DicomStudy>(t => t.SubjectVisitId != subjectVisitId && t.TrialId == studyInfo.TrialId && t.SubjectId == studyInfo.SubjectId)
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.ProjectTo<RelationStudyDTO>(_mapper.ConfigurationProvider).ToList();
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var list = query.OrderBy(u => u.VisitName).ThenBy(s => s.StudyCode).ToList();
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return ResponseOutput.Ok(list);
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}
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/// <summary> 指定资源Id，获取Dicom检查信息 </summary>
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/// <param name="studyId"> Dicom检查的Id </param>
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[HttpGet, Route("{studyId:guid}")]
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[AllowAnonymous]
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public IResponseOutput<DicomStudyDTO> Item(Guid studyId)
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{
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return ResponseOutput.Ok(_mapper.Map<DicomStudyDTO>(_repository.Where<DicomStudy>().FirstOrDefault(s => s.Id == studyId)));
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}
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/// <summary>
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/// 批量验证 检查是否可以上传 并告知原因
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/// </summary>
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[HttpPost]
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public IResponseOutput<List<VerifyStudyUploadResult>> VerifyStudyAllowUpload(VerifyUploadOrReupload verifyInfo)
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{
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var trialInfo = _repository.Where<Trial>().FirstOrDefault(t => t.Id == verifyInfo.TrialId).IfNullThrowException();
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var result = new List<VerifyStudyUploadResult>();
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var visitList = _repository.Where<SubjectVisit>(t => t.SubjectId == verifyInfo.SubjectId).Select(t => new { t.VisitNum, t.EarliestScanDate, t.LatestScanDate, t.Id }).ToList();
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verifyInfo.StudyInstanceUidList.ForEach(waitUploadItem =>
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{
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if (trialInfo.IsVerifyVisitImageDate)
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{
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//小于当前访视 最近的最晚拍片
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var before = visitList.Where(u => u.VisitNum < verifyInfo.VisitNum).Max(k => k.LatestScanDate);
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if (before != null && waitUploadItem.StudyDate != null && before > waitUploadItem.StudyDate)
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{
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result.Add(new VerifyStudyUploadResult() { ErrorMesseage = $"当前访视检查时间{waitUploadItem.StudyDate?.ToString("yyyy-MM-dd")}不能早于前序访视检查时间{before?.ToString("yyyy-MM-dd")}，请核对检查数据是否有误", StudyInstanceUid = waitUploadItem.StudyInstanceUid });
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return;
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}
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//大于当前访视 最近的最早拍片日期
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var after = visitList.Where(u => u.VisitNum > verifyInfo.VisitNum).Min(k => k.EarliestScanDate);
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if (after != null && waitUploadItem.StudyDate != null && after < waitUploadItem.StudyDate)
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{
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result.Add(new VerifyStudyUploadResult() { ErrorMesseage = $"当前访视检查时间{waitUploadItem.StudyDate?.ToString("yyyy-MM-dd")}不能晚于该访视之后的检查时间{after?.ToString("yyyy-MM-dd")}，请核对检查数据是否有误", StudyInstanceUid = waitUploadItem.StudyInstanceUid });
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return;
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}
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}
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var temp = VerifyStudyUpload(waitUploadItem.StudyInstanceUid, verifyInfo.TrialId, verifyInfo.SubjectVisitId, verifyInfo.SubjectId);
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result.Add(temp);
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});
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return ResponseOutput.Ok(result);
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}
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private VerifyStudyUploadResult VerifyStudyUpload(string studyInstanceUid, Guid trialId, Guid currentSubjectVisitId, Guid SubjectId)
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{
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var result = new VerifyStudyUploadResult();
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if (_provider.Exists("StudyUid_" + studyInstanceUid))
|
||
{
|
||
result.AllowUpload = false;
|
||
|
||
result.AllowReUpload = false;
|
||
result.StudyInstanceUid = studyInstanceUid;
|
||
result.ErrorMesseage = "当前有人正在上传归档该检查!";
|
||
|
||
return result;
|
||
}
|
||
|
||
if (_repository.Where<Subject>(t => t.Id == SubjectId).Select(t => t.Status).FirstOrDefault() == SubjectStatus.EndOfVisit)
|
||
{
|
||
result.AllowUpload = false;
|
||
|
||
result.AllowReUpload = false;
|
||
result.StudyInstanceUid = studyInstanceUid;
|
||
result.ErrorMesseage = "受试者访视结束，不允许上传!";
|
||
|
||
return result;
|
||
}
|
||
|
||
Guid expectStudyId = IdentifierHelper.CreateGuid(studyInstanceUid.Trim(), trialId.ToString());
|
||
|
||
|
||
|
||
var verifyStudyInfo = _repository.Where<DicomStudy>(t => t.TrialId == trialId && t.Id == expectStudyId).ProjectTo<VerifyStudyDto>(_mapper.ConfigurationProvider).FirstOrDefault();
|
||
result.StudyInfo = verifyStudyInfo;
|
||
|
||
|
||
//数据库不存在该检查 允许上传
|
||
if (verifyStudyInfo == null)
|
||
{
|
||
result.AllowUpload = true;
|
||
}
|
||
//数据库该项目有该检查 看是否支持重传
|
||
else
|
||
{
|
||
//是同一个受试者 支持重传
|
||
if (verifyStudyInfo.SubjectId == SubjectId && verifyStudyInfo.SubjectVisitId == currentSubjectVisitId)
|
||
{
|
||
result.AllowReUpload = true;
|
||
}
|
||
//不是同一个受试者
|
||
else
|
||
{
|
||
//有默认值，其实不用写，这里为了好理解
|
||
result.AllowUpload = false;
|
||
|
||
result.AllowReUpload = false;
|
||
|
||
result.ErrorMesseage = $"此处不可以上传。当前影像检查已经上传给受试者{verifyStudyInfo.SubjectCode}的{verifyStudyInfo.VisitName}";
|
||
}
|
||
}
|
||
result.StudyInstanceUid = studyInstanceUid;
|
||
return result;
|
||
}
|
||
|
||
|
||
|
||
|
||
/// <summary>
|
||
/// 获取保存到Dicom文件中的信息
|
||
/// </summary>
|
||
/// <param name="subjectVisitId"></param>
|
||
/// <returns></returns>
|
||
public DicomTrialSiteSubjectInfo GetSaveToDicomInfo(Guid subjectVisitId)
|
||
{
|
||
//6表连接 subject trial trialSite sponsor subjectVisit site
|
||
var info = _subjectVisitRepository.Where(t => t.Id == subjectVisitId).ProjectTo<DicomTrialSiteSubjectInfo>(_mapper.ConfigurationProvider).FirstOrDefault().IfNullThrowException();
|
||
|
||
return info;
|
||
}
|
||
|
||
public (List<string> SeriesInstanceUid, List<string> SopInstanceUid) GetHasUploadSeriesAndInstance(Guid studyId)
|
||
{
|
||
var seriesInstanceUidList = _dicomSeriesRepository.Where(t => t.StudyId == studyId).Select(t => t.SeriesInstanceUid).ToList();
|
||
|
||
var sopInstanceUidList = _dicomInstanceRepository.Where(t => t.StudyId == studyId).Select(t => t.SopInstanceUid).ToList();
|
||
|
||
return (seriesInstanceUidList, sopInstanceUidList);
|
||
}
|
||
|
||
}
|
||
}
|