376 lines
16 KiB
C#
376 lines
16 KiB
C#
using Microsoft.AspNetCore.Mvc;
|
|
using IRaCIS.Core.Application.Service.Reading.Dto;
|
|
using MassTransit;
|
|
|
|
namespace IRaCIS.Application.Services
|
|
{
|
|
/// <summary>
|
|
/// 临床数据配置
|
|
/// </summary>
|
|
[ApiExplorerSettings(GroupName = "Reading")]
|
|
public class ClinicalDataSetService : BaseService
|
|
{
|
|
|
|
public IRepository<SubjectVisit> _subjectVisitRepository;
|
|
|
|
private readonly IRepository<ClinicalDataTrialSet> _clinicalDataTrialSetRepository;
|
|
private readonly IRepository<ClinicalDataSystemSet> _clinicalDataSystemSetRepository;
|
|
private readonly IRepository<PreviousPDF> _previousPDFRepository;
|
|
private readonly IRepository<Trial> _trialRepository;
|
|
|
|
|
|
public ClinicalDataSetService(IRepository<SubjectVisit> subjectVisitRepository,
|
|
|
|
IRepository<ClinicalDataTrialSet> ClinicalDataTrialSetRepository,
|
|
IRepository<ClinicalDataSystemSet> ClinicalDataSystemSetRepository,
|
|
IRepository<PreviousPDF> previousPDFRepository,
|
|
IRepository<Trial> trialRepository
|
|
|
|
|
|
)
|
|
{
|
|
|
|
_subjectVisitRepository = subjectVisitRepository;
|
|
|
|
_clinicalDataTrialSetRepository = ClinicalDataTrialSetRepository;
|
|
_clinicalDataSystemSetRepository = ClinicalDataSystemSetRepository;
|
|
this._previousPDFRepository = previousPDFRepository;
|
|
this._trialRepository = trialRepository;
|
|
}
|
|
|
|
|
|
|
|
#region 系统
|
|
/// <summary>
|
|
/// 新增或者修改(系统)
|
|
/// </summary>
|
|
/// <param name="indto"></param>
|
|
/// <returns></returns>
|
|
[HttpPost]
|
|
public async Task<IResponseOutput> AddOrUpdateClinicalDataSystemSet(ClinicalDataSystemSetAddOrEdit indto)
|
|
{
|
|
|
|
var existsQuery = _clinicalDataSystemSetRepository
|
|
.WhereIf(indto.Id != null, x => x.Id != indto.Id)
|
|
.Where(x => x.ClinicalDataSetName == indto.ClinicalDataSetName);
|
|
|
|
if (await existsQuery.AnyAsync())
|
|
{
|
|
return ResponseOutput.NotOk("存在同类型的临床数据,操作失败");
|
|
}
|
|
|
|
indto.CriterionEnumListStr= $"|{String.Join('|', indto.CriterionEnumList)}|";
|
|
|
|
var entity = await _clinicalDataSystemSetRepository.InsertOrUpdateAsync(indto);
|
|
|
|
//entity.SystemClinicalDataCriterionList = indto.SystemCriterionIdList.Select(t => new SystemClinicalDataCriterion()
|
|
//{
|
|
// SystemClinicalDataSetId = entity.Id,
|
|
// SystemReadingCriterionId = t
|
|
//}).ToList();
|
|
|
|
//if (indto.Id != null)
|
|
//{
|
|
// await _systemClinicalDataCriterionRepository.BatchDeleteNoTrackingAsync(t => t.SystemClinicalDataSetId == entity.Id);
|
|
|
|
// await _systemClinicalDataCriterionRepository.AddRangeAsync(entity.SystemClinicalDataCriterionList);
|
|
//}
|
|
|
|
await _clinicalDataSystemSetRepository.SaveChangesAsync();
|
|
|
|
return ResponseOutput.Ok(entity.Id.ToString());
|
|
}
|
|
|
|
/// <summary>
|
|
/// 获取系统临床数据（系统）
|
|
/// </summary>
|
|
/// <returns></returns>
|
|
[HttpPost]
|
|
public async Task<List<ClinicalDataSystemSetView>> GetSystemClinicalDataSystemSetList(GetTrialClinicalDataSystemIndto inDto)
|
|
{
|
|
return await _clinicalDataSystemSetRepository.AsQueryable()
|
|
.WhereIf(inDto.ClinicalDataLevel != null, x => x.ClinicalDataLevel == inDto.ClinicalDataLevel)
|
|
.WhereIf(inDto.ClinicalUploadType != null, x => x.ClinicalUploadType == inDto.ClinicalUploadType)
|
|
.WhereIf(inDto.ClinicalDataSetName != String.Empty, x => x.ClinicalDataSetName.Contains(inDto.ClinicalDataSetName))
|
|
|
|
.ProjectTo<ClinicalDataSystemSetView>(_mapper.ConfigurationProvider).ToListAsync();
|
|
}
|
|
|
|
/// <summary>
|
|
/// 删除(系统)
|
|
/// </summary>
|
|
/// <param name="id"></param>
|
|
/// <returns></returns>
|
|
[HttpDelete("{id:guid}")]
|
|
public async Task<IResponseOutput> DeleteClinicalSystemSetData(Guid id)
|
|
{
|
|
await _clinicalDataSystemSetRepository.DeleteFromQueryAsync(x => x.Id == id, true);
|
|
return ResponseOutput.Result(true);
|
|
}
|
|
|
|
#endregion
|
|
|
|
|
|
|
|
#region 项目
|
|
/// <summary>
|
|
/// 新增或者修改(项目)
|
|
/// </summary>
|
|
/// <param name="indto"></param>
|
|
/// <returns></returns>
|
|
[HttpPost]
|
|
public async Task<IResponseOutput> AddOrUpdateClinicalDataTrialSet(ClinicalDataTrialSetAddOrEdit indto)
|
|
{
|
|
var existsQuery = _clinicalDataTrialSetRepository
|
|
.WhereIf(indto.Id != null, x => x.Id != indto.Id)
|
|
.Where(x => x.ClinicalDataSetName == indto.ClinicalDataSetName && x.TrialId == indto.TrialId);
|
|
|
|
if (await existsQuery.AnyAsync())
|
|
{
|
|
return ResponseOutput.NotOk("存在同类型的临床数据,操作失败");
|
|
}
|
|
|
|
indto.CriterionEnumListStr = $"|{String.Join('|', indto.CriterionEnumList)}|";
|
|
|
|
var entity = await _clinicalDataTrialSetRepository.InsertOrUpdateAsync(indto, true);
|
|
|
|
//entity.TrialClinicalDataCriterionList = indto.TrialCriterionIdList.Select(t => new TrialClinicalDataCriterion()
|
|
//{
|
|
// TrialClinicalDataSetId = entity.Id,
|
|
// TrialReadingCriterionId = t
|
|
//}).ToList();
|
|
|
|
//if (indto.Id != null)
|
|
//{
|
|
// await _trialClinicalDataCriterionRepository.BatchDeleteNoTrackingAsync(t => t.TrialClinicalDataSetId == entity.Id);
|
|
|
|
// await _trialClinicalDataCriterionRepository.AddRangeAsync(entity.TrialClinicalDataCriterionList);
|
|
//}
|
|
|
|
|
|
|
|
await _clinicalDataTrialSetRepository.SaveChangesAsync();
|
|
return ResponseOutput.Ok(entity.Id.ToString());
|
|
}
|
|
|
|
|
|
|
|
|
|
|
|
/// <summary>
|
|
/// 获取项目的临床数据
|
|
/// </summary>
|
|
/// <param name="inDto"></param>
|
|
/// <returns></returns>
|
|
[HttpPost]
|
|
[UnitOfWork]
|
|
public async Task<List<ClinicalDataTrialSetView>> GetTrialClinicalDataTrialSetList(GetTrialClinicalDataTrialIndto inDto)
|
|
{
|
|
await this.AddTrialClinicalDataTrialSet(inDto.TrialId);
|
|
|
|
var trialClinicalDataList = await _clinicalDataTrialSetRepository.AsQueryable()
|
|
.Where(x => x.TrialId == inDto.TrialId)
|
|
.WhereIf(inDto.ClinicalDataLevel != null, x => x.ClinicalDataLevel == inDto.ClinicalDataLevel)
|
|
.WhereIf(inDto.ClinicalUploadType != null, x => x.ClinicalUploadType == inDto.ClinicalUploadType)
|
|
.WhereIf(inDto.ClinicalDataSetName != String.Empty, x => x.ClinicalDataSetName.Contains(inDto.ClinicalDataSetName))
|
|
.ProjectTo<ClinicalDataTrialSetView>(_mapper.ConfigurationProvider).ToListAsync();
|
|
return trialClinicalDataList;
|
|
}
|
|
|
|
|
|
|
|
|
|
/// <summary>
|
|
/// 删除(项目)
|
|
/// </summary>
|
|
/// <param name="id"></param>
|
|
/// <returns></returns>
|
|
[HttpDelete("{id:guid}")]
|
|
public async Task<IResponseOutput> DeleteClinicalTrialSetData(Guid id)
|
|
{
|
|
await _clinicalDataTrialSetRepository.DeleteFromQueryAsync(x => x.Id == id, true);
|
|
return ResponseOutput.Result(true);
|
|
}
|
|
|
|
#endregion
|
|
|
|
|
|
#region 系统和项目标准下拉 界面上配置和临床数据关联 废弃
|
|
|
|
//[HttpPost]
|
|
//public async Task<List<SystemCriterionSelectDto>> GetSystemCriterionSelectList(SystemCriterionSelectQuery inQuery)
|
|
//{
|
|
// return await _repository.Where<ReadingQuestionCriterionSystem>()
|
|
// .WhereIf(!string.IsNullOrEmpty(inQuery.CriterionName), t => t.CriterionName.Contains(inQuery.CriterionName))
|
|
// .WhereIf(inQuery.IsEnable != null, t => t.IsEnable == inQuery.IsEnable)
|
|
// .WhereIf(inQuery.IsCompleteConfig != null, t => t.IsCompleteConfig == inQuery.IsCompleteConfig)
|
|
// .Select(t => new SystemCriterionSelectDto()
|
|
// {
|
|
// Id = t.Id,
|
|
// CriterionName = t.CriterionName,
|
|
// IsCompleteConfig = t.IsCompleteConfig,
|
|
// IsEnable = t.IsEnable
|
|
// }).ToListAsync();
|
|
//}
|
|
|
|
|
|
//[HttpPost]
|
|
//public async Task<List<TrialCriterionSelectDto>> GetTrialCriterionSelectList(TrialCriterionSelectQuery inQuery)
|
|
//{
|
|
// return await _repository.Where<ReadingQuestionCriterionTrial>(t => t.TrialId == inQuery.TrialId)
|
|
// .WhereIf(!string.IsNullOrEmpty(inQuery.CriterionName), t => t.CriterionName.Contains(inQuery.CriterionName))
|
|
// .WhereIf(inQuery.IsEnable != null, t => t.IsEnable == inQuery.IsEnable)
|
|
// .WhereIf(inQuery.IsCompleteConfig != null, t => t.IsCompleteConfig == inQuery.IsCompleteConfig)
|
|
// .Select(t => new TrialCriterionSelectDto()
|
|
// {
|
|
// Id = t.Id,
|
|
// CriterionName = t.CriterionName,
|
|
// IsCompleteConfig = t.IsCompleteConfig,
|
|
// IsEnable = t.IsEnable
|
|
// }).ToListAsync();
|
|
//}
|
|
|
|
|
|
#endregion
|
|
|
|
|
|
|
|
#region 将系统配置添加到项目配置
|
|
|
|
/// <summary>
|
|
/// 将系统配置添加到项目配置
|
|
/// </summary>
|
|
/// <param name="trialId"></param>
|
|
/// <returns></returns>
|
|
|
|
private async Task AddTrialClinicalDataTrialSet(Guid trialId)
|
|
{
|
|
|
|
#region MyRegion
|
|
|
|
|
|
if (!await _clinicalDataTrialSetRepository.AnyAsync(x => x.TrialId == trialId && x.SystemClinicalDataSetId != null))
|
|
{
|
|
var systemClinicalDataList = await _clinicalDataSystemSetRepository.AsQueryable()/*.Include(t => t.SystemClinicalDataCriterionList)*/.ToListAsync();
|
|
var systemIds = systemClinicalDataList.Select(x => x.Id).ToList();
|
|
|
|
var trialSystemClinicalDataSetIds = await _clinicalDataTrialSetRepository.Where(x => x.TrialId == trialId && x.SystemClinicalDataSetId != null).Select(x => x.SystemClinicalDataSetId.Value).ToListAsync();
|
|
|
|
var needAddids = systemIds.Except(trialSystemClinicalDataSetIds).ToList();
|
|
|
|
var systemDataList = systemClinicalDataList.Where(x => needAddids.Contains(x.Id)).ToList();
|
|
|
|
var readingCriterionList = _repository.Where<ReadingQuestionCriterionTrial>(t => t.TrialId == trialId).Where(t => t.ReadingQuestionCriterionSystemId != null)
|
|
.Select(t => new { t.ReadingQuestionCriterionSystemId, TrialReadingCriterionId = t.Id }).ToList();
|
|
|
|
|
|
List<ClinicalDataTrialSet> dataSets = systemDataList.Select(x => new ClinicalDataTrialSet()
|
|
{
|
|
Id = NewId.NextGuid(),
|
|
SystemClinicalDataSetId = x.Id,
|
|
ClinicalDataSetName = x.ClinicalDataSetName,
|
|
ClinicalDataLevel = x.ClinicalDataLevel,
|
|
ClinicalUploadType = x.ClinicalUploadType,
|
|
UploadRole = x.UploadRole,
|
|
FileName = x.FileName,
|
|
Path = x.Path,
|
|
TrialId = trialId,
|
|
|
|
CriterionEnumListStr=x.CriterionEnumListStr
|
|
|
|
//TrialClinicalDataCriterionList = readingCriterionList.Where(t => x.SystemClinicalDataCriterionList.Select(c => (Guid?)c.SystemReadingCriterionId).ToList().Contains(t.ReadingQuestionCriterionSystemId)).Select(c =>
|
|
//new TrialClinicalDataCriterion() { TrialReadingCriterionId = c.TrialReadingCriterionId }).ToList()
|
|
}).ToList();
|
|
|
|
|
|
|
|
await _clinicalDataTrialSetRepository.AddRangeAsync(dataSets);
|
|
|
|
var result = await _clinicalDataTrialSetRepository.SaveChangesAsync();
|
|
|
|
}
|
|
|
|
#endregion
|
|
|
|
|
|
#region OLd
|
|
//var syncClinicalDataTime = await _trialRepository.Where(x => x.Id == trialId).Select(x => x.SyncClinicalDataTime).FirstOrDefaultAsync();
|
|
//if (syncClinicalDataTime == null)
|
|
//{
|
|
// var systemClinicalDataList = await _clinicalDataSystemSetRepository.AsQueryable().Include(t => t.SystemClinicalDataCriterionList).ToListAsync();
|
|
// var systemIds = systemClinicalDataList.Select(x => x.Id).ToList();
|
|
|
|
// var trialSystemClinicalDataSetIds = await _clinicalDataTrialSetRepository.Where(x => x.TrialId == trialId && x.SystemClinicalDataSetId != null).Select(x => x.SystemClinicalDataSetId.Value).ToListAsync();
|
|
|
|
// var needAddids = systemIds.Except(trialSystemClinicalDataSetIds).ToList();
|
|
|
|
// var systemDataList = systemClinicalDataList.Where(x => needAddids.Contains(x.Id)).ToList();
|
|
|
|
// var readingCriterionList = _repository.Where<ReadingQuestionCriterionTrial>(t => t.TrialId == trialId).Where(t => t.ReadingQuestionCriterionSystemId != null)
|
|
// .Select(t => new { t.ReadingQuestionCriterionSystemId, TrialReadingCriterionId = t.Id }).ToList();
|
|
|
|
|
|
// List<ClinicalDataTrialSet> dataSets = systemDataList.Select(x => new ClinicalDataTrialSet()
|
|
// {
|
|
// Id = NewId.NextGuid(),
|
|
// SystemClinicalDataSetId = x.Id,
|
|
// ClinicalDataSetName = x.ClinicalDataSetName,
|
|
// ClinicalDataLevel = x.ClinicalDataLevel,
|
|
// ClinicalUploadType = x.ClinicalUploadType,
|
|
// UploadRole = x.UploadRole,
|
|
// FileName = x.FileName,
|
|
// Path = x.Path,
|
|
// TrialId = trialId,
|
|
|
|
// TrialClinicalDataCriterionList = readingCriterionList.Where(t => x.SystemClinicalDataCriterionList.Select(c => (Guid?)c.SystemReadingCriterionId).ToList().Contains(t.ReadingQuestionCriterionSystemId)).Select(c =>
|
|
// new TrialClinicalDataCriterion() { TrialReadingCriterionId = c.TrialReadingCriterionId }).ToList()
|
|
// }).ToList();
|
|
|
|
|
|
// #region 临床数据标准
|
|
|
|
|
|
// // dataSets.ForEach(x =>
|
|
// //x.TrialClinicalDataCriterionList = systemClinicalDataList.Where(t => t.Id == x.SystemClinicalDataSetId)
|
|
// // .Select(t => new TrialClinicalDataCriterion() { TrialReadingCriterionId = x.cl }).ToList()
|
|
// // );
|
|
|
|
// #endregion
|
|
|
|
|
|
|
|
// await _clinicalDataTrialSetRepository.AddRangeAsync(dataSets);
|
|
|
|
// //var needUpdateitemList = await _clinicalDataTrialSetRepository.Where(x => x.TrialId == trialId && needUpdateIds.Contains(x.SystemClinicalDataSetId.Value)).ToListAsync();
|
|
// //foreach (var item in needUpdateitemList)
|
|
// //{
|
|
// // var systemData = systemClinicalDataList.FirstOrDefault(x => x.Id == item.SystemClinicalDataSetId);
|
|
// // await _clinicalDataTrialSetRepository.UpdatePartialNoQueryAsync(item.Id,x=>new ClinicalDataTrialSet() {
|
|
|
|
// // ClinicalDataSetName = systemData.ClinicalDataSetName,
|
|
// // ClinicalDataLevel = systemData.ClinicalDataLevel,
|
|
// // ClinicalUploadType = systemData.ClinicalUploadType,
|
|
// // UploadRole = systemData.UploadRole,
|
|
// // FileName = systemData.FileName,
|
|
// // Path = systemData.Path,
|
|
// // });
|
|
// //}
|
|
|
|
// await _trialRepository.BatchUpdateNoTrackingAsync(x => x.Id == trialId, x => new Trial()
|
|
// {
|
|
// SyncClinicalDataTime = DateTime.Now,
|
|
// });
|
|
|
|
|
|
// var result = await _clinicalDataTrialSetRepository.SaveChangesAsync();
|
|
|
|
//}
|
|
|
|
#endregion
|
|
|
|
|
|
}
|
|
#endregion
|
|
}
|
|
}
|