Merge branch 'Test_IRC_Net8' of http://192.168.3.68:2000/XCKJ/irc-netcore-api into Test_IRC_Net8
continuous-integration/drone/push Build is passing
Details
continuous-integration/drone/push Build is passing
Details
commit
14fb158e13
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@ -10,6 +10,7 @@ using System.Linq.Expressions;
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using IRaCIS.Core.Infrastructure;
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using System.Linq.Dynamic.Core;
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using Microsoft.Extensions.Logging;
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using IRaCIS.Core.Infrastructure.Extention;
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namespace IRaCIS.Application.Services
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{
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@ -84,7 +85,7 @@ namespace IRaCIS.Application.Services
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{
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var existsQuery = _readingClinicalDataRepository
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.WhereIf(indto.Id != null, x => x.Id != indto.Id)
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.Where(x => x.ClinicalDataTrialSetId == indto.ClinicalDataTrialSetId && x.ReadingId == indto.ReadingId&&x.StudyId==indto.StudyId);
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.Where(x => x.ClinicalDataTrialSetId == indto.ClinicalDataTrialSetId && x.ReadingId == indto.ReadingId && x.StudyId == indto.StudyId);
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@ -265,19 +266,20 @@ namespace IRaCIS.Application.Services
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.Select(x => new GetCRCClinicalDataOutDto()
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{
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Id = x.Id,
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ClinicalDataSetName = x.ClinicalDataTrialSet.ClinicalDataSetName.LanguageName(x.ClinicalDataTrialSet.ClinicalDataSetEnName, _userInfo.IsEn_Us) ,
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ClinicalDataSetName = x.ClinicalDataTrialSet.ClinicalDataSetName.LanguageName(x.ClinicalDataTrialSet.ClinicalDataSetEnName, _userInfo.IsEn_Us),
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ClinicalUploadType = x.ClinicalDataTrialSet.ClinicalUploadType,
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ClinicalDataLevel=x.ClinicalDataTrialSet.ClinicalDataLevel,
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ClinicalDataSetEnName =x.ClinicalDataTrialSet.ClinicalDataSetEnName,
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ClinicalDataLevel = x.ClinicalDataTrialSet.ClinicalDataLevel,
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ClinicalDataSetEnName = x.ClinicalDataTrialSet.ClinicalDataSetEnName,
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ClinicalDataTrialSetId = x.ClinicalDataTrialSet.Id,
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FileName = x.ClinicalDataTrialSet.FileName,
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UploadRole = x.ClinicalDataTrialSet.UploadRole,
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Path = x.ClinicalDataTrialSet.Path,
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IsBlind = x.IsBlind,
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IsComplete = x.IsComplete,
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ClinicalFromList=x.Subject.ClinicalFormList.Where(y=>y.ReadingId==x.ReadingId&&y.ClinicalDataTrialSetId==x.ClinicalDataTrialSetId).Select(y=> new ClinicalFromData() {
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CheckDate=y.CheckDate,
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ClinicalFormId=y.Id
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ClinicalFromList = x.Subject.ClinicalFormList.Where(y => y.ReadingId == x.ReadingId && y.ClinicalDataTrialSetId == x.ClinicalDataTrialSetId).Select(y => new ClinicalFromData()
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{
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CheckDate = y.CheckDate,
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ClinicalFormId = y.Id
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}).ToList(),
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PDFFileList = x.ReadingClinicalDataPDFList.Select(y => new GetFileDto()
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{
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@ -367,7 +369,7 @@ namespace IRaCIS.Application.Services
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//}
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data.IsBlind = inDto.IsBlind;
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data.IsComplete=inDto.IsComplete;
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data.IsComplete = inDto.IsComplete;
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data.IsSign = true;
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data.ReadingClinicalDataState = ReadingClinicalDataStatus.HaveSigned;
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@ -386,7 +388,7 @@ namespace IRaCIS.Application.Services
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//如果先生成了任务，再签名subject级别 PM 临床数据，那么会导致其他标准的任务签名状态无法得到维护
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if (await _repository.AnyAsync<ClinicalDataTrialSet>(t=>t.Id == data.ClinicalDataTrialSetId && t.UploadRole == UploadRole.PM && t.ClinicalDataLevel == ClinicalLevel.Subject))
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if (await _repository.AnyAsync<ClinicalDataTrialSet>(t => t.Id == data.ClinicalDataTrialSetId && t.UploadRole == UploadRole.PM && t.ClinicalDataLevel == ClinicalLevel.Subject))
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{
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var needDealTrialReadingCriterionIdList = _repository.Where<ClinicalDataTrialSet>(t => t.Id == data.ClinicalDataTrialSetId)
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.SelectMany(t => t.TrialClinicalDataSetCriteriaList)
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@ -513,7 +515,7 @@ namespace IRaCIS.Application.Services
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}
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//有序阅片才维护 IsFrontTaskNeedSignButNotSign 这个状态
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if (_readingQuestionCriterionTrialRepository.Any(t=>t.Id==trialReadingCritrialId && t.IsReadingTaskViewInOrder == ReadingOrder.InOrder))
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if (_readingQuestionCriterionTrialRepository.Any(t => t.Id == trialReadingCritrialId && t.IsReadingTaskViewInOrder == ReadingOrder.InOrder))
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{
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@ -538,7 +540,7 @@ namespace IRaCIS.Application.Services
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(t.Subject.SubjectVisitTaskList.AsQueryable().Where(visitTaskLambda).Any(c => c.IsNeedClinicalDataSign == true && c.IsClinicalDataSign == false && c.VisitTaskNum < t.VisitTaskNum)
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// 前序存在 未一致性核查未通过的
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|| t.Subject.SubjectVisitList.Any(sv => sv.CheckState != CheckStateEnum.CVPassed && t.VisitTaskNum>sv.VisitNum)
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|| t.Subject.SubjectVisitList.Any(sv => sv.CheckState != CheckStateEnum.CVPassed && t.VisitTaskNum > sv.VisitNum)
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))
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.Select(t => t.Id);
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@ -646,13 +648,13 @@ namespace IRaCIS.Application.Services
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.WhereIf(inDto.IsVisit && !inDto.IsBaseLine, x => x.ClinicalDataLevel == ClinicalLevel.SubjectVisit)
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.WhereIf(!inDto.IsVisit, x => x.ClinicalDataLevel == ClinicalLevel.ImageRead || x.ClinicalDataLevel == ClinicalLevel.OncologyRead)
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.WhereIf(readModule != null, x => x.ClinicalDataLevel == keyValuePairs[readModule!.ModuleType])
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.WhereIf(inDto.TrialReadingCriterionId!=null,x=>x.TrialClinicalDataSetCriteriaList.Any(y=>y.TrialReadingCriterionId== inDto.TrialReadingCriterionId))
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.WhereIf(inDto.TrialReadingCriterionId != null, x => x.TrialClinicalDataSetCriteriaList.Any(y => y.TrialReadingCriterionId == inDto.TrialReadingCriterionId))
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//.WhereIf(criterion!=null,x=>x.CriterionEnumListStr.Contains($"|{(int)criterion.CriterionType}|"))
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.Select(x => new GetTrialClinicalDataSelectOutDto()
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{
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ClinicalDataLevel = x.ClinicalDataLevel,
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ClinicalDataSetName = x.ClinicalDataSetName.LanguageName(x.ClinicalDataSetEnName, _userInfo.IsEn_Us),
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ClinicalDataSetEnName=x.ClinicalDataSetEnName,
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ClinicalDataSetEnName = x.ClinicalDataSetEnName,
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ClinicalUploadType = x.ClinicalUploadType,
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FileName = x.FileName,
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Path = x.Path,
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@ -749,7 +751,14 @@ namespace IRaCIS.Application.Services
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var isBaseLine = await _subjectVisitRepository.AnyAsync(x => x.Id == inDto.ReadingId && x.IsBaseLine);
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var result = await this.GetReadingClinicalList(inDto);
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var result = await this.GetClinicalDataList(new GetReadingOrTaskClinicalDataListInDto() {
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ClinicalDataTrialSetId = inDto.ClinicalDataTrialSetId,
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GetClinicalType=inDto.GetClinicalType,
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SubjectId=inDto.SubjectId,
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TrialId=inDto.TrialId,
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ReadingId=inDto.ReadingId,
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TrialReadingCriterionId = inDto.TrialReadingCriterionId,
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});
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var readingIds = result.Select(x => x.ReadingId).ToList();
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var previousHistoryList = await _previousHistoryRepository.Where(x => readingIds.Contains(x.SubjectVisitId)).ProjectTo<PreviousHistoryView>(_mapper.ConfigurationProvider).ToListAsync();
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@ -787,6 +796,7 @@ namespace IRaCIS.Application.Services
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.WhereIf(inDto.ClinicalDataTrialSetId != null, x => x.ClinicalDataTrialSetId == inDto.ClinicalDataTrialSetId)
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.WhereIf(inDto.SelectIsSign, x => x.IsSign == true)
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.Where(x => x.ReadingId == inDto.ReadingId)
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.WhereIf(inDto.TrialReadingCriterionId!=null, x => x.ClinicalDataTrialSet.TrialClinicalDataSetCriteriaList.Any(t => t.TrialReadingCriterionId == inDto.TrialReadingCriterionId))
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.Select(x => new GetReadingClinicalDataListOutDto()
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{
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ClinicalDataLevel = x.ClinicalDataTrialSet.ClinicalDataLevel,
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@ -802,6 +812,10 @@ namespace IRaCIS.Application.Services
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Id = x.Id,
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UploadRole = x.ClinicalDataTrialSet.UploadRole,
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IsCRCUpload = x.ClinicalDataTrialSet.UploadRole == UploadRole.CRC,
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IsBlind = x.IsBlind,
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IsComplete = x.IsComplete,
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FileCount = x.FileCount,
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ReadingClinicalDataState = x.ReadingClinicalDataState,
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FileList = x.ReadingClinicalDataPDFList.Select(y => new GetFileDto()
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{
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Id = y.Id,
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@ -819,10 +833,11 @@ namespace IRaCIS.Application.Services
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}
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var readingIds = result.Select(x => x.ReadingId).ToList();
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var clinical = await _clinicalFormRepository.Where(x => readingIds.Contains(x.ReadingId??default(Guid))).ToListAsync();
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result.Where(x => x.ClinicalUploadType == ClinicalUploadType.Structuring).ForEach(x => {
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var clinical = await _clinicalFormRepository.Where(x => readingIds.Contains(x.ReadingId ?? default(Guid))).ToListAsync();
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result.Where(x => x.ClinicalUploadType == ClinicalUploadType.Structuring).ForEach(x =>
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{
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x.ClinicalFromList = clinical.Where(y => y.ReadingId == x.ReadingId&&y.ClinicalDataTrialSetId==x.ClinicalDataTrialSetId).Select(y => new ClinicalFromData()
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x.ClinicalFromList = clinical.Where(y => y.ReadingId == x.ReadingId && y.ClinicalDataTrialSetId == x.ClinicalDataTrialSetId).Select(y => new ClinicalFromData()
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{
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CheckDate = y.CheckDate,
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ClinicalFormId = y.Id
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@ -833,17 +848,19 @@ namespace IRaCIS.Application.Services
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// 这里处理CRC上传 阅片期的临床数据
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var readModule = await _readModuleRepository.Where(x => x.Id == inDto.ReadingId)
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.WhereIf(inDto.SelectIsSign,x=>x.IsPMConfirm)
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//.Where(x=>x.IsCRCConfirm)
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.WhereIf(inDto.SelectIsSign, x => x.IsPMConfirm)
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.WhereIf(!inDto.SelectIsSign, x => x.IsCRCConfirm)
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.FirstOrDefaultAsync();
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if (readModule != null)
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{
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var moduleCriterionFromList = await _readModuleCriterionFromRepository
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.WhereIf(inDto.ClinicalDataTrialSetId != null, x => x.ClinicalForm.ClinicalDataTrialSetId == inDto.ClinicalDataTrialSetId)
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.Where(x => x.ReadModuleId == readModule.Id).Select(x => new{
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ClinicalFormId= x.ClinicalFormId,
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CheckDate= x.ClinicalForm.CheckDate,
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ClinicalDataTrialSetId= x.ClinicalForm.ClinicalDataTrialSetId
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.Where(x => x.ReadModuleId == readModule.Id).Select(x => new
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{
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ClinicalFormId = x.ClinicalFormId,
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CheckDate = x.ClinicalForm.CheckDate,
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ClinicalDataTrialSetId = x.ClinicalForm.ClinicalDataTrialSetId
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}).ToListAsync();
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@ -852,16 +869,16 @@ namespace IRaCIS.Application.Services
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var clinicalresult = await _clinicalDataTrialSetRepository.Where(x => x.UploadRole == UploadRole.CRC && x.ClinicalUploadType == ClinicalUploadType.Structuring)
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.WhereIf(readModule.ReadingSetType == ReadingSetType.ImageReading, x => x.ClinicalDataLevel == ClinicalLevel.ImageRead)
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.WhereIf(readModule.ReadingSetType == ReadingSetType.TumorReading, x => x.ClinicalDataLevel == ClinicalLevel.OncologyRead)
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.Where(x=>x.TrialClinicalDataSetCriteriaList.Any(y=>y.TrialReadingCriterionId==readModule.TrialReadingCriterionId))
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.Where(x => x.TrialClinicalDataSetCriteriaList.Any(y => y.TrialReadingCriterionId == readModule.TrialReadingCriterionId))
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.Select(x => new GetReadingClinicalDataListOutDto()
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{
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ClinicalDataLevel = x.ClinicalDataLevel,
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SubjectId = inDto.SubjectId,
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ReadingId = default(Guid),
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IsCRCApplicationRevoke=readModule.IsCRCApplicationRevoke,
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IsCRCConfirm= readModule.IsCRCConfirm,
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IsPMConfirm= readModule.IsPMConfirm,
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IsCRCApplicationRevoke = readModule.IsCRCApplicationRevoke,
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IsCRCConfirm = readModule.IsCRCConfirm,
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IsPMConfirm = readModule.IsPMConfirm,
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ClinicalDataSetName = x.ClinicalDataSetName.LanguageName(x.ClinicalDataSetEnName, _userInfo.IsEn_Us),
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ClinicalDataSetEnName = x.ClinicalDataSetEnName,
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ClinicalDataTrialSetId = x.Id,
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@ -872,7 +889,7 @@ namespace IRaCIS.Application.Services
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IsCRCUpload = x.UploadRole == UploadRole.CRC,
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IsNeedMerge = true,
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ReadModuleId = readModule.Id,
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TrialClinicalDataSetCriteriaList=x.TrialClinicalDataSetCriteriaList,
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TrialClinicalDataSetCriteriaList = x.TrialClinicalDataSetCriteriaList,
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//FileCount = x.FileCount,
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//ReadingClinicalDataState = x.ReadingClinicalDataState,
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@ -923,7 +940,7 @@ namespace IRaCIS.Application.Services
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result = result.Where(x => x.UploadRole == UploadRole.PM).ToList();
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break;
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case GetClinicalType.CRCConfirm:
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result = result.Where(x => x.UploadRole == UploadRole.CRC&&x.IsCRCConfirm&&!x.IsPMConfirm).ToList();
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result = result.Where(x => x.UploadRole == UploadRole.CRC && x.IsCRCConfirm && !x.IsPMConfirm).ToList();
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break;
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case GetClinicalType.HasSign:
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result = result.Where(x => x.IsSign).ToList();
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@ -949,155 +966,6 @@ namespace IRaCIS.Application.Services
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return result;
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}
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/// <summary>
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/// 获取临床数据集合
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/// </summary>
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/// <returns></returns>
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[NonDynamicMethod]
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public async Task<List<GetReadingClinicalDataListOutDto>> GetReadingClinicalList(GetReadingClinicalDataListIndto inDto)
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{
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var resultQuery = _readingClinicalDataRepository.Where(x => x.SubjectId == inDto.SubjectId)
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.Where(x => x.ReadingId == inDto.ReadingId)
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.WhereIf(inDto.ClinicalDataTrialSetId!=null, x=>x.ClinicalDataTrialSetId==inDto.TrialReadingCriterionId)
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.Where(x => x.ClinicalDataTrialSet.TrialClinicalDataSetCriteriaList.Any(t=>t.TrialReadingCriterionId==inDto.TrialReadingCriterionId))
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.Select(x => new GetReadingClinicalDataListOutDto()
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{
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ClinicalDataLevel = x.ClinicalDataTrialSet.ClinicalDataLevel,
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SubjectId = x.SubjectId,
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ReadingId = x.ReadingId,
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ClinicalDataSetName = x.ClinicalDataTrialSet.ClinicalDataSetName.LanguageName(x.ClinicalDataTrialSet.ClinicalDataSetEnName, _userInfo.IsEn_Us),
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ClinicalDataSetEnName =x.ClinicalDataTrialSet.ClinicalDataSetEnName,
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ClinicalDataTrialSetId = x.ClinicalDataTrialSetId,
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IsSign = x.IsSign,
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ClinicalUploadType = x.ClinicalDataTrialSet.ClinicalUploadType,
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Id = x.Id,
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UploadRole = x.ClinicalDataTrialSet.UploadRole,
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IsCRCUpload = x.ClinicalDataTrialSet.UploadRole == UploadRole.CRC,
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IsBlind = x.IsBlind,
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IsComplete = x.IsComplete,
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FileCount = x.FileCount,
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ReadingClinicalDataState = x.ReadingClinicalDataState,
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FileList = x.ReadingClinicalDataPDFList.Select(y => new GetFileDto()
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{
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Id = y.Id,
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FileName = y.FileName,
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Path = y.Path,
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CreateTime = y.CreateTime,
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}).ToList()
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});
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var result = await resultQuery.ToListAsync();
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var readingIds = result.Select(x => x.ReadingId).ToList();
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var clinical = await _clinicalFormRepository.Where(x => readingIds.Contains(x.ReadingId ?? default(Guid))).ToListAsync();
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result.Where(x => x.ClinicalUploadType == ClinicalUploadType.Structuring).ForEach(x => {
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x.ClinicalFromList = clinical.Where(y => y.ReadingId == x.ReadingId && y.ClinicalDataTrialSetId == x.ClinicalDataTrialSetId).Select(y => new ClinicalFromData()
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{
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CheckDate = y.CheckDate,
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ClinicalFormId = y.Id
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}).ToList();
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x.FileCount = x.ClinicalFromList.Count;
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});
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// 这里处理CRC上传 阅片期的临床数据
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var readModule = await _readModuleRepository.Where(x => x.Id == inDto.ReadingId&&x.IsCRCConfirm)
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.FirstOrDefaultAsync();
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if (readModule != null)
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{
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var moduleCriterionFromList = await _readModuleCriterionFromRepository.Where(x => x.ReadModuleId == readModule.Id)
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.WhereIf(inDto.ClinicalDataTrialSetId != null, x => x.ClinicalForm.ClinicalDataTrialSetId == inDto.TrialReadingCriterionId)
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.Select(x => new {
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ClinicalFormId = x.ClinicalFormId,
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CheckDate = x.ClinicalForm.CheckDate,
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ClinicalDataTrialSetId = x.ClinicalForm.ClinicalDataTrialSetId
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}).ToListAsync();
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var clinicalresult = await _clinicalDataTrialSetRepository.Where(x => x.UploadRole == UploadRole.CRC&&x.ClinicalUploadType== ClinicalUploadType.Structuring)
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.WhereIf(readModule.ReadingSetType == ReadingSetType.ImageReading,x=>x.ClinicalDataLevel== ClinicalLevel.ImageRead)
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.WhereIf(readModule.ReadingSetType == ReadingSetType.TumorReading, x => x.ClinicalDataLevel == ClinicalLevel.OncologyRead)
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.Where(x => x.TrialClinicalDataSetCriteriaList.Any(y => y.TrialReadingCriterionId == readModule.TrialReadingCriterionId))
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.Select(x => new GetReadingClinicalDataListOutDto()
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{
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ClinicalDataLevel = x.ClinicalDataLevel,
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SubjectId = inDto.SubjectId,
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ReadingId = default(Guid),
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IsCRCApplicationRevoke= readModule.IsCRCApplicationRevoke,
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IsCRCConfirm = readModule.IsCRCConfirm,
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IsPMConfirm=readModule.IsPMConfirm,
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ClinicalDataSetName = x.ClinicalDataSetName.LanguageName(x.ClinicalDataSetEnName, _userInfo.IsEn_Us),
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ClinicalDataSetEnName = x.ClinicalDataSetEnName,
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ClinicalDataTrialSetId = x.Id,
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IsSign = readModule.IsPMConfirm,
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ClinicalUploadType = x.ClinicalUploadType,
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Id = default(Guid),
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UploadRole = x.UploadRole,
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IsCRCUpload = x.UploadRole == UploadRole.CRC,
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IsNeedMerge = true,
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ReadModuleId = readModule.Id,
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//FileCount = x.FileCount,
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//ReadingClinicalDataState = x.ReadingClinicalDataState,
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//FileList = x.ReadingClinicalDataPDFList.Select(y => new GetFileDto()
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//{
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// Id = y.Id,
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// FileName = y.FileName,
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// Path = y.Path,
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// CreateTime = y.CreateTime,
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//}).ToList()
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}).ToListAsync();
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clinicalresult.ForEach(x =>
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{
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x.FileCount = moduleCriterionFromList.Where(y => y.ClinicalDataTrialSetId == x.ClinicalDataTrialSetId).Count();
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x.ClinicalFromList = moduleCriterionFromList.Where(y => y.ClinicalDataTrialSetId == x.ClinicalDataTrialSetId).OrderBy(y => y.CheckDate).Select(x => new ClinicalFromData
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{
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CheckDate = x.CheckDate,
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ClinicalFormId = x.ClinicalFormId
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}).ToList();
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x.IsSign = readModule.IsPMConfirm ?true : false;
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x.ReadingClinicalDataState = readModule.IsPMConfirm ? ReadingClinicalDataStatus.HaveSigned : ReadingClinicalDataStatus.HaveChecked;
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});
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result.AddRange(clinicalresult);
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}
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if (inDto.GetClinicalType != null)
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{
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switch (inDto.GetClinicalType)
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{
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case GetClinicalType.PMUpload:
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result = result.Where(x => x.UploadRole == UploadRole.PM).ToList();
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break;
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case GetClinicalType.CRCConfirm:
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result = result.Where(x => x.UploadRole == UploadRole.CRC&&x.IsCRCConfirm&&!x.IsPMConfirm).ToList();
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break;
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case GetClinicalType.HasSign:
|
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result = result.Where(x => x.IsSign).ToList();
|
||||
break;
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
return result;
|
||||
}
|
||||
|
||||
#endregion
|
||||
|
||||
|
||||
|
|
|
|||
|
|
@ -199,6 +199,9 @@ namespace IRaCIS.Core.Application.Service.Reading.Dto
|
|||
|
||||
public class GetReadingOrTaskClinicalDataListInDto
|
||||
{
|
||||
|
||||
public Guid? TrialReadingCriterionId { get; set; }
|
||||
|
||||
[NotDefault]
|
||||
public Guid SubjectId { get; set; }
|
||||
|
||||
|
|
|
|||
|
|
@ -22,7 +22,6 @@ namespace IRaCIS.Core.Application.Contracts
|
|||
|
||||
// Task<(List<GetReadingClinicalDataListOutDto>, object)> GetReadingClinicalDataList(GetReadingClinicalDataListIndto inDto);
|
||||
|
||||
Task<List<GetReadingClinicalDataListOutDto>> GetReadingClinicalList(GetReadingClinicalDataListIndto inDto);
|
||||
|
||||
Task<List<GetCRCClinicalDataOutDto>> GetStudyClinicalData(GetStudyClinicalDataInDto inDto);
|
||||
|
||||
|
|
|
|||
|
|
@ -470,7 +470,7 @@ namespace IRaCIS.Application.Services
|
|||
if (finishReading)
|
||||
{
|
||||
// 获取临床数据
|
||||
var clinicalData = await _readingClinicalDataService.GetReadingClinicalList(new GetReadingClinicalDataListIndto()
|
||||
var clinicalData = await _readingClinicalDataService.GetClinicalDataList(new GetReadingOrTaskClinicalDataListInDto()
|
||||
{
|
||||
SubjectId = readModuleInfo.SubjectId,
|
||||
ReadingId = readModuleInfo.Id,
|
||||
|
|
|
|||
Loading…
Reference in New Issue