同步遮盖影像初步预提交

IRaCIS.Core.Application/Helper/OtherTool/DicomSortHelper.cs

@@ -178,11 +178,10 @@ public static class DicomPixelMasker
     public static async Task<MemoryStream> MaskAsync(
         Stream input,
         IEnumerable<MaskRegion> regions,
-        DicomMaskOptions? options = null,
-        CancellationToken cancellationToken = default)
+        DicomMaskOptions? options = null)
     {
         var output = new MemoryStream();
-        await MaskAsync(input, output, regions, options, cancellationToken).ConfigureAwait(false);
+        await MaskAsync(input, output, regions, options).ConfigureAwait(false);
         output.Position = 0;
         return output;
     }
@@ -211,6 +210,7 @@ public static class DicomPixelMasker
         var workingDataset = workingFile.Dataset;
 
         var originalPhotometric = originalDataset.GetSingleValueOrDefault(DicomTag.PhotometricInterpretation, string.Empty);
+
         Console.WriteLine($"Original Photometric={originalPhotometric}, Original TS={originalTs.UID.UID}");
 
         var rows = workingDataset.GetSingleValue<int>(DicomTag.Rows);

IRaCIS.Core.Application/IRaCIS.Core.Application.xml

@@ -2965,6 +2965,12 @@
             <param name="inQuery"></param>
             <returns></returns>
         </member>
+        <member name="M:IRaCIS.Core.Application.Service.ImageAndDoc.StudyService.StudyMaskImage(IRaCIS.Core.Application.Contracts.StudyMaskImageCommand)">
+            <summary>
+            标注遮盖影像 
+            </summary>
+            <returns></returns>
+        </member>
         <member name="M:IRaCIS.Core.Application.Service.ImageAndDoc.StudyService.Preview(System.Guid)">
             <summary> 指定资源Id，渲染Dicom检查的Jpeg预览图像  </summary>
             <param name="studyId"> Dicom检查的Id </param>

IRaCIS.Core.Application/Service/ImageAndDoc/DTO/UnionStudyViewDodel.cs

@@ -1,4 +1,5 @@
 using FellowOakDicom;
+using IRaCIS.Core.Application.Helper;
 using IRaCIS.Core.Application.Service.ImageAndDoc.DTO;
 using IRaCIS.Core.Domain.Share;
 using Newtonsoft.Json;
@@ -963,7 +964,7 @@ namespace IRaCIS.Core.Application.Contracts
     }
 
 
-    public class SubjectVisitMarkQuery:PageInput
+    public class SubjectVisitMarkQuery : PageInput
     {
         public Guid TrialId { get; set; }
 
@@ -1047,4 +1048,15 @@ namespace IRaCIS.Core.Application.Contracts
 
         public List<StudyBasicInfo> UploadStudyList { get; set; }
     }
+
+    public class StudyMaskImageCommand
+    {
+        public Guid? SeriesId { get; set; }
+
+        public List<Guid>? InstanceIdList { get; set; }
+
+        public List<MaskRegion> MaskRegionList { get; set; }
+
+
+    }
 }

IRaCIS.Core.Application/Service/ImageAndDoc/StudyService.cs

@@ -7,6 +7,7 @@ using IRaCIS.Core.Infrastructure;
 using Medallion.Threading;
 using Microsoft.AspNetCore.Authorization;
 using Microsoft.AspNetCore.Mvc;
+using System.Drawing;
 using ZiggyCreatures.Caching.Fusion;
 
 namespace IRaCIS.Core.Application.Service.ImageAndDoc
@@ -25,7 +26,7 @@ namespace IRaCIS.Core.Application.Service.ImageAndDoc
         IRepository<StudyMonitor> _studyMonitorRepository,
         IRepository<SystemAnonymization> _systemAnonymizationRepository,
         IRepository<NoneDicomStudy> _noneDicomStudyRepository,
-        IDistributedLockProvider _distributedLockProvider,
+        IDistributedLockProvider _distributedLockProvider, IOSSService _oSSService,
         IMapper _mapper, IUserInfo _userInfo, IStringLocalizer _localizer, IFusionCache _fusionCache) : BaseService, IStudyService
     {
 
@@ -66,6 +67,53 @@ namespace IRaCIS.Core.Application.Service.ImageAndDoc
         }
 
 
+        /// <summary>
+        /// 标注遮盖影像 
+        /// </summary>
+        /// <returns></returns>
+        public async Task<IResponseOutput> StudyMaskImage(StudyMaskImageCommand inCommand)
+        {
+            if (inCommand.SeriesId == null && inCommand.InstanceIdList == null)
+            {
+                return ResponseOutput.NotOk("SeriesId and InstanceIdList can not both be null");
+            }
+
+            var instancePathList = new List<string>();
+
+            if (inCommand.SeriesId == null && inCommand.InstanceIdList != null)
+            {
+                instancePathList = await _dicomInstanceRepository.Where(t => inCommand.InstanceIdList.Contains(t.Id)).Select(t => t.Path).ToListAsync();
+                
+            }
+            else
+            {
+                instancePathList = await _dicomInstanceRepository.Where(t => t.SeriesId == inCommand.SeriesId).Select(t => t.Path).ToListAsync();
+            }
+
+            foreach (var path in instancePathList)
+            {
+                try
+                {
+                    var inputStream = await _oSSService.GetStreamFromOSSAsync(path);
+
+                    var outPutStream = await DicomPixelMasker.MaskAsync(inputStream, inCommand.MaskRegionList);
+
+                    var prefix = path.Substring(1, path.LastIndexOf('/') - 1);
+                    await _oSSService.UploadToOSSAsync(outPutStream, prefix, $"MaskImage_{Path.GetFileName(path)}");
+                }
+                catch (Exception ex)
+                {
+
+                    Log.Logger.Error(ex, $"StudyMaskImage Error for InstanceIdList Path:{path}  {ex.Message}");
+                }
+
+            }
+
+            return ResponseOutput.Ok();
+
+
+        }
+
         [TrialGlobalLimit("AfterStopCannNotOpt")]
 
         public async Task<IResponseOutput> PreArchiveDicomStudy(PreArchiveDicomStudyCommand preArchiveStudyCommand)
@@ -324,7 +372,7 @@ namespace IRaCIS.Core.Application.Service.ImageAndDoc
 
                 }
 
-               
+
 
 
                 var @lock2 = _distributedLockProvider.CreateLock($"StudyCommit");
@@ -334,7 +382,7 @@ namespace IRaCIS.Core.Application.Service.ImageAndDoc
                     await _dicomInstanceRepository.SaveChangesAsync();
                 }
 
-              await  _fileUploadRecordRepository.BatchUpdateNoTrackingAsync(t => t.UploadBatchId == incommand.UploadBatchId, u => new FileUploadRecord() { StudyCode = findStudy.StudyCode });
+                await _fileUploadRecordRepository.BatchUpdateNoTrackingAsync(t => t.UploadBatchId == incommand.UploadBatchId, u => new FileUploadRecord() { StudyCode = findStudy.StudyCode });
             }
             catch (Exception ex)
             {
@@ -437,7 +485,7 @@ namespace IRaCIS.Core.Application.Service.ImageAndDoc
                      Id = t.Id,
 
                      Bodypart = t.BodyPart,
-                     BodyPartForEditOther=t.BodyPartForEditOther,
+                     BodyPartForEditOther = t.BodyPartForEditOther,
 
                      Modalities = t.Modality,
 

IRaCIS.Core.Application/TestService.cs

@@ -129,8 +129,8 @@ namespace IRaCIS.Core.Application.Service
         public async Task<IResponseOutput> MaskImage()
         {
 
-            var sourceDir = @"D:\images";
-            var targetDir = @"D:\images\after";
+            var sourceDir = @"D:\images\11\像素匿名\隐私信息2&测量值\08\08017\基线（V1）\ST01371_1970-01-01_US\IMAGE";
+            var targetDir = @"D:\images\11\像素匿名\隐私信息2&测量值\08\08017\基线（V1）\ST01371_1970-01-01_US\IMAGE\after";
 
             Directory.CreateDirectory(targetDir);
             var regions = new[]
@@ -138,7 +138,7 @@ namespace IRaCIS.Core.Application.Service
                 new MaskRegion(0, 0, 200, 200)
             };
 
-            foreach (var inputPath in Directory.EnumerateFiles(sourceDir, "*.dcm", SearchOption.TopDirectoryOnly))
+            foreach (var inputPath in Directory.EnumerateFiles(sourceDir, "IM_*", SearchOption.TopDirectoryOnly))
             {
                 var relativePath = Path.GetRelativePath(sourceDir, inputPath);
                 var outputPath = Path.Combine(targetDir, relativePath);