Merge branch 'Test_IRC_Net8' of https://gitea.frp.extimaging.com/XCKJ/irc-netcore-api into Test_IRC_Net8
continuous-integration/drone/push Build is passing Details

Test_IRC_Net8
he 2025-12-19 18:08:52 +08:00
commit 45af1d7ba6
7 changed files with 138 additions and 38 deletions

View File

@ -100,11 +100,11 @@ namespace IRaCIS.Core.Application.Helper
var dicomFile = new DicomFile(dataset);
// 文件名递增格式IM_00001, IM_00002, ...
string filename = $@"IMAGE/IM_{index:D5}"; // :D5 表示补足5位
string filename = $@"IMAGE\IM_{index:D5}"; // :D5 表示补足5位
mappings.Add($"{filename} => {item.InstanceId}");
dic.Add(item.InstanceId.ToString(), Path.GetFileName(filename));
dic.Add(item.InstanceId.ToString(), filename.TrimEnd('/', '\\').Split('/', '\\').Last());
dicomDir.AddFile(dicomFile, filename);

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@ -15707,7 +15707,7 @@
</member>
<member name="M:IRaCIS.Core.Application.Helper.OSSService.DeleteFromPrefix(System.String,System.Boolean)">
<summary>
删除某个目录的文件
删除某个目录的文件 (包含单个文件oss单个文件需要去除前缀/)
</summary>
<param name="prefix"></param>
<returns></returns>

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@ -159,7 +159,8 @@ namespace IRaCIS.Core.Application.Service.ImageAndDoc
if (inQuery.IsImageSegmentLabel == true)
{
var querySV = _subjectVisitRepository.WhereIf(inQuery.SubjectVisitId != null, t => t.Id == inQuery.SubjectVisitId)
var querySV = _subjectVisitRepository.Where(t => t.CheckState == CheckStateEnum.CVPassed)
.WhereIf(inQuery.SubjectVisitId != null, t => t.Id == inQuery.SubjectVisitId)
.WhereIf(inQuery.SubjectId != null, t => t.SubjectId == inQuery.SubjectId)
.Select(u => new SubjectVisitMarkUploadDto()
{
@ -230,7 +231,7 @@ namespace IRaCIS.Core.Application.Service.ImageAndDoc
var query = _visitTaskRepository.Where(t => t.SubjectId == subjectId && t.TrialReadingCriterionId == inQuery.TrialReadingCriterionId && t.SourceSubjectVisitId != null
var query = _visitTaskRepository.Where(t => t.SubjectId == subjectId && t.TrialReadingCriterionId == inQuery.TrialReadingCriterionId && t.SourceSubjectVisit.CheckState == CheckStateEnum.CVPassed
&& t.DoctorUserId == _userInfo.UserRoleId && t.TaskState == TaskState.Effect)
//满足 有序或者随机只看到当前任务的dicom 非dicom检查
.WhereIf(criterionInfo.IsReadingTaskViewInOrder != ReadingOrder.SubjectRandom && inQuery.VisitTaskId != null, t => t.Id == inQuery.VisitTaskId)
@ -989,7 +990,7 @@ namespace IRaCIS.Core.Application.Service.ImageAndDoc
var list = _noneDicomStudyReposiotry.Where(t => t.SubjectId == subjectId)
var list = _noneDicomStudyReposiotry.Where(t => t.SubjectId == subjectId && t.SubjectVisit.CheckState == CheckStateEnum.CVPassed)
.WhereIf(inQuery.SubjectVisitId != null, t => t.SubjectVisitId == inQuery.SubjectVisitId)
//.WhereIf(info.IsImageFilter, t => ("|" + info.CriterionModalitys + "|").Contains("|" + t.Modality + "|"))
.Select(u => new TaskNoneDicomStudyDTO()
@ -1047,7 +1048,7 @@ namespace IRaCIS.Core.Application.Service.ImageAndDoc
else
{
var query = from u in _visitTaskRepository.Where(t => t.SubjectId == subjectId && t.TrialReadingCriterionId == inQuery.TrialReadingCriterionId
&& t.SourceSubjectVisitId != null && t.DoctorUserId == doctorUserId && t.TaskState == TaskState.Effect)
&& t.SourceSubjectVisit.CheckState == CheckStateEnum.CVPassed && t.DoctorUserId == doctorUserId && t.TaskState == TaskState.Effect)
//满足 有序或者随机只看到当前任务的dicom 非dicom检查
.WhereIf(info.IsReadingTaskViewInOrder != ReadingOrder.SubjectRandom && inQuery.VisitTaskId != null, t => t.Id == inQuery.VisitTaskId)
join ns in _noneDicomStudyReposiotry.Where(t => t.SubjectId == subjectId).WhereIf(info.IsImageFilter, t => ("|" + info.CriterionModalitys + "|").Contains("|" + t.Modality + "|"))
@ -1137,6 +1138,8 @@ namespace IRaCIS.Core.Application.Service.ImageAndDoc
var dirDic = new Dictionary<string, string>();
#region DIR处理导出文件名并将对应关系上传到OSS里面存储
var info = await _subjectVisitRepository.Where(t => t.Id == inQuery.SubjectVisitId).Select(t => new { t.Trial.TrialCode }).FirstOrDefaultAsync();
//有传输语法值的导出 才生成DIR
if (_subjectVisitRepository.Where(t => t.Id == inQuery.SubjectVisitId).SelectMany(t => t.StudyList.SelectMany(t => t.InstanceList)).All(c => c.TransferSytaxUID != string.Empty))
{
@ -1148,7 +1151,7 @@ namespace IRaCIS.Core.Application.Service.ImageAndDoc
DicomStudyId = t.DicomStudy.Id,
PatientId = t.DicomStudy.PatientId,
PatientId = info.TrialCode + "-" + t.DicomStudy.PatientId,
PatientName = t.DicomStudy.PatientName,
PatientBirthDate = t.DicomStudy.PatientBirthDate,
PatientSex = t.DicomStudy.PatientSex,
@ -1329,7 +1332,7 @@ namespace IRaCIS.Core.Application.Service.ImageAndDoc
if (inQuery.IsImageSegmentLabel == true)
{
var list = await _subjectVisitRepository
var list = await _subjectVisitRepository.Where(t => t.CheckState == CheckStateEnum.CVPassed)
.WhereIf(inQuery.SubjectId != null, t => t.SubjectId == inQuery.SubjectId)
.ProjectTo<SubjectVisitMarkStudyDto>(_mapper.ConfigurationProvider).ToListAsync();
@ -1404,7 +1407,7 @@ namespace IRaCIS.Core.Application.Service.ImageAndDoc
}
var query = _visitTaskRepository.Where(t => t.SubjectId == subjectId && t.TrialReadingCriterionId == inQuery.TrialReadingCriterionId
&& t.SourceSubjectVisitId != null && t.DoctorUserId == doctorUserId)
&& t.SourceSubjectVisit.CheckState == CheckStateEnum.CVPassed && t.DoctorUserId == doctorUserId)
//满足 有序或者随机只看到当前任务的dicom 非dicom检查
.WhereIf(inQuery.VisitTaskId == null, t => t.TaskState == TaskState.Effect)//从待阅列表进入,要筛选出有效的,任务可能重阅了,也要看到该任务的
.WhereIf(criterionInfo.IsReadingTaskViewInOrder != ReadingOrder.SubjectRandom && inQuery.VisitTaskId != null, t => t.Id == inQuery.VisitTaskId)
@ -1508,7 +1511,7 @@ namespace IRaCIS.Core.Application.Service.ImageAndDoc
public async Task<IResponseOutput> GetIRReadingDownloadStudyInfo(IRDownloadQuery inQuery)
{
var info = await _readingQuestionCriterionTrialRepository.Where(t => t.Id == inQuery.TrialReadingCriterionId)
.Select(t => new { t.IsImageFilter, t.CriterionModalitys, t.TrialId, t.IsReadingTaskViewInOrder }).FirstNotNullAsync();
.Select(t => new { t.IsImageFilter, t.CriterionModalitys, t.TrialId, t.IsReadingTaskViewInOrder, t.Trial.TrialCode }).FirstNotNullAsync();
var isQueryDicom = inQuery.DicomStudyIdList.Count > 0;
var isQueryNoneDicom = inQuery.NoneDicomStudyIdList.Count > 0;
@ -1526,7 +1529,7 @@ namespace IRaCIS.Core.Application.Service.ImageAndDoc
#region 在下载前先处理DIR文件
//有传输语法值的导出 才生成DIR
if (_subjectVisitRepository.Where(t => t.SubjectId == inQuery.SubjectId).SelectMany(t => t.StudyList.SelectMany(t => t.InstanceList)).All(c => c.TransferSytaxUID != string.Empty))
if (_subjectVisitRepository.Where(t => t.SubjectId == inQuery.SubjectId && t.CheckState == CheckStateEnum.CVPassed).SelectMany(t => t.StudyList.SelectMany(t => t.InstanceList)).All(c => c.TransferSytaxUID != string.Empty))
{
var dirInfolist = _subjectRepository.Where(t => t.Id == inQuery.SubjectId).SelectMany(t => t.SubjectVisitList.Where(t => subjectVisitIdList.Contains(t.Id))).SelectMany(t => t.StudyList)
.Where(t => isQueryDicom ? inQuery.DicomStudyIdList.Contains(t.Id) : false)
@ -1539,7 +1542,7 @@ namespace IRaCIS.Core.Application.Service.ImageAndDoc
DicomStudyId = t.DicomStudy.Id,
PatientId = t.DicomStudy.PatientId,
PatientId = info.TrialCode + "-" + t.DicomStudy.PatientId,
PatientName = t.DicomStudy.PatientName,
PatientBirthDate = t.DicomStudy.PatientBirthDate,
PatientSex = t.DicomStudy.PatientSex,
@ -1579,7 +1582,7 @@ namespace IRaCIS.Core.Application.Service.ImageAndDoc
DicomStudyId = t.TaskStudy.Id,
PatientId = t.TaskStudy.PatientId,
PatientId = info.TrialCode + "-" + t.TaskStudy.PatientId,
PatientName = t.TaskStudy.PatientName,
PatientBirthDate = t.TaskStudy.PatientBirthDate,
PatientSex = t.TaskStudy.PatientSex,
@ -1642,7 +1645,7 @@ namespace IRaCIS.Core.Application.Service.ImageAndDoc
#endregion
var query = from sv in _subjectRepository.Where(t => t.Id == inQuery.SubjectId).SelectMany(t => t.SubjectVisitList.Where(t => subjectVisitIdList.Contains(t.Id)))
var query = from sv in _subjectRepository.Where(t => t.Id == inQuery.SubjectId).SelectMany(t => t.SubjectVisitList.Where(t => subjectVisitIdList.Contains(t.Id) && t.CheckState == CheckStateEnum.CVPassed))
//一致性分析,导致查询出来两条数据
join visitTask in _visitTaskRepository.Where(t => taskIdList.Contains(t.Id)) on sv.Id equals visitTask.SourceSubjectVisitId into cc
from leftVisitTask in cc.DefaultIfEmpty()
@ -2248,7 +2251,6 @@ namespace IRaCIS.Core.Application.Service.ImageAndDoc
}
else
{
#region 在下载前先处理DIR文件
//有传输语法值的导出 才生成DIR
@ -2263,7 +2265,7 @@ namespace IRaCIS.Core.Application.Service.ImageAndDoc
DicomStudyId = t.DicomStudy.Id,
PatientId = t.DicomStudy.PatientId,
PatientId = t.Trial.TrialCode + "-" + t.DicomStudy.PatientId,
PatientName = t.DicomStudy.PatientName,
PatientBirthDate = t.DicomStudy.PatientBirthDate,
PatientSex = t.DicomStudy.PatientSex,
@ -2406,16 +2408,16 @@ namespace IRaCIS.Core.Application.Service.ImageAndDoc
SubjectCode = t.Code,
IsUrgent = t.IsUrgent,
VisitCount = t.SubjectVisitList.Where(t => t.SubmitState == SubmitStateEnum.Submitted).Count(),
VisitCount = t.SubjectVisitList.Where(t => t.SubmitState == SubmitStateEnum.Submitted && t.CheckState == CheckStateEnum.CVPassed).Count(),
MarkIVUSVisitCount = t.SubjectVisitList.Where(t => t.SubmitState == SubmitStateEnum.Submitted).Count(t => t.NoneDicomStudyList.Where(t => t.Modality == "IVUS").SelectMany(c => c.ImageLabelNoneDicomFileList).Any()),
MarkIVUSVisitCount = t.SubjectVisitList.Where(t => t.SubmitState == SubmitStateEnum.Submitted && t.CheckState == CheckStateEnum.CVPassed).Count(t => t.NoneDicomStudyList.Where(t => t.Modality == "IVUS").SelectMany(c => c.ImageLabelNoneDicomFileList).Any()),
MarkOCTVisitCount = t.SubjectVisitList.Where(t => t.SubmitState == SubmitStateEnum.Submitted).Count(t => t.NoneDicomStudyList.Where(t => t.Modality == "OCT").SelectMany(c => c.ImageLabelNoneDicomFileList).Any()),
MarkOCTVisitCount = t.SubjectVisitList.Where(t => t.SubmitState == SubmitStateEnum.Submitted && t.CheckState == CheckStateEnum.CVPassed).Count(t => t.NoneDicomStudyList.Where(t => t.Modality == "OCT").SelectMany(c => c.ImageLabelNoneDicomFileList).Any()),
DicomStudyCount = t.SubjectVisitList.Where(t => t.SubmitState == SubmitStateEnum.Submitted).SelectMany(t => t.StudyList).Count(),
DicomStudyCount = t.SubjectVisitList.Where(t => t.SubmitState == SubmitStateEnum.Submitted && t.CheckState == CheckStateEnum.CVPassed).SelectMany(t => t.StudyList).Count(),
//MarkDicomStudyCount = t.SubjectVisitList.Where(t => t.SubmitState == SubmitStateEnum.Submitted).SelectMany(t => t.TaskStudyList).Count(),
NoneDicomStudyCount = t.SubjectVisitList.Where(t => t.SubmitState == SubmitStateEnum.Submitted).SelectMany(t => t.NoneDicomStudyList).Count(),
NoneDicomStudyCount = t.SubjectVisitList.Where(t => t.SubmitState == SubmitStateEnum.Submitted && t.CheckState == CheckStateEnum.CVPassed).SelectMany(t => t.NoneDicomStudyList).Count(),
//MarkNoneDicomStudyCount = t.SubjectVisitList.Where(t => t.SubmitState == SubmitStateEnum.Submitted).SelectMany(t => t.NoneDicomStudyList).Where(t => t.ImageLabelNoneDicomFileList.Any()).Count(),
}).ToPagedListAsync(inQuery);

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@ -91,17 +91,48 @@ namespace IRaCIS.Core.Application.ViewModel
public Guid? TrialSiteId { get; set; }
}
public class FirstPdInfo
{
public string SubjectCode { get; set; }
public DateTime? EarliestScanDate { get; set; }
public DateTime? BaseLineLatestScanDate { get; set; }
// 新增属性:天数差
public double? DaysDiff
{
get
{
if (BaseLineLatestScanDate.HasValue && EarliestScanDate.HasValue)
{
return (EarliestScanDate.Value - BaseLineLatestScanDate.Value).TotalDays;
}
return null;
}
}
}
public class EfficacyEvaluationStatViewModel
{
public string? DictionaryCode { get; set; }
public string Code { get; set; }
public string OverallTumorEvaluation { get; set; }
public int SubjectCount { get; set; }
public int SubjectCount => SubjectCodeList.Count();
public List<string> SubjectCodeList { get; set; }
}
public class EfficacyEvaluationExport
{
public DateTime? EarliestScanDate { get; set; }
public DateTime? LatestScanDate { get; set; }
public Guid Id { get; set; }

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@ -113,18 +113,18 @@ public class TrialStatService(
/// <param name="inQuery"></param>
/// <returns></returns>
[HttpPost]
public async Task<List<EfficacyEvaluationStatViewModel>> GetTrialEfficacyEvaluationStatList(EfficacyEvaluationQuery inQuery)
public async Task<IResponseOutput<List<EfficacyEvaluationStatViewModel>>> GetTrialEfficacyEvaluationStatList(EfficacyEvaluationQuery inQuery)
{
var trialReadingCriterionId = inQuery.TrialReadingCriterionId;
//每次查询必须是单标准的
var criterion = await _readingQuestionCriterionTrialRepository.Where(t => t.Id == trialReadingCriterionId).Select(t => new { t.CriterionType, t.CriterionGroup, t.IsGlobalReading, t.IsArbitrationReading, t.IsOncologyReading, t.CriterionName, t.ArbitrationRule,t.TrialId }).FirstNotNullAsync();
var criterion = await _readingQuestionCriterionTrialRepository.Where(t => t.Id == trialReadingCriterionId).Select(t => new { t.CriterionType, t.CriterionGroup, t.IsGlobalReading, t.IsArbitrationReading, t.IsOncologyReading, t.CriterionName, t.ArbitrationRule, t.TrialId }).FirstNotNullAsync();
if (criterion.CriterionGroup == CriterionGroup.Nontumorous)
{
return new List<EfficacyEvaluationStatViewModel>();
return ResponseOutput.Ok(new List<EfficacyEvaluationStatViewModel>());
}
@ -132,15 +132,18 @@ public class TrialStatService(
if (criterion.CriterionType == CriterionType.RECIST1Point1 || criterion.CriterionType == CriterionType.RECIST1Pointt1_MB
|| criterion.CriterionType == CriterionType.IRECIST1Point1 || criterion.CriterionType == CriterionType.mRECISTHCC)
{
questionType = QuestionType.Tumor;
//iresist pfs 是icpd
}
else if (criterion.CriterionType == CriterionType.Lugano2014 || criterion.CriterionType == CriterionType.Lugano2014WithoutPET)
else if (criterion.CriterionType == CriterionType.Lugano2014)
{
questionType = QuestionType.ImgOncology;
}
else if (criterion.CriterionType == CriterionType.Lugano2014WithoutPET)
{
questionType = QuestionType.CTandMRI;
}
else if (criterion.CriterionType == CriterionType.PCWG3)
{
@ -164,6 +167,8 @@ public class TrialStatService(
ReadingCategory = t.ReadingCategory,
ArmEnum = t.ArmEnum,
JudgeArmEnum = t.JudgeResultTask.ArmEnum,
LatestScanDate = t.SourceSubjectVisit.LatestScanDate,
EarliestScanDate = t.SourceSubjectVisit.EarliestScanDate,
IsTrigerJudge = criterion.ArbitrationRule == ArbitrationRule.Visit ? t.JudgeVisitTaskId != null :
(criterion.ArbitrationRule == ArbitrationRule.Reading ?
@ -176,7 +181,7 @@ public class TrialStatService(
DictionaryCode = t.ReadingTaskQuestionAnswerList.Where(c => c.ReadingQuestionTrial.QuestionType == questionType).Select(t => t.ReadingQuestionTrial.DictionaryCode).FirstOrDefault(),
//整体肿瘤评估答案
OverallTumorEvaluation = t.ReadingTaskQuestionAnswerList.Where(c => c.ReadingQuestionTrial.QuestionType == questionType).FirstOrDefault()!.Answer
OverallTumorEvaluation = t.ReadingTaskQuestionAnswerList.Where(c => c.ReadingQuestionTrial.QuestionType == questionType).Select(t => t.IsGlobalChange ? t.GlobalChangeAnswer : t.Answer).FirstOrDefault()
});
@ -201,6 +206,24 @@ public class TrialStatService(
//处理裁判标记
list = DealJudgeMark(criterion.ArbitrationRule, criterion.IsGlobalReading, list);
//基线(最晚拍片日期)-首次PD所有触发PD的病灶的检查的最早拍片日期的中位数单位是天
// 构建字典SubjectCode -> LatestScanDate
var baseLineDict = list.Where(t => t.VisitTaskNum == 0).GroupBy(t => t.SubjectCode)
.ToDictionary(
g => g.Key,
g => g.First().LatestScanDate // 如果同一个 SubjectCode 有多条记录,只取第一条
);
//一定要两个人做完了,产生了裁判并且有结果的,否则就不算,并且排除基线
list = list.Where(t => t.IsJudgeSelect == true && t.VisitTaskNum != 0 && t.ReadingCategory==ReadingCategory.Visit)//全局的答案已经放在对应访视上了
.GroupBy(t => t.SubjectCode).Select(g => g.OrderByDescending(t => t.VisitTaskNum).First()).ToList();
//总subject 数量
var totalSubjectCount = list.Select(t => t.SubjectId).Distinct().Count();
//判断subject的逻辑需要确认这么多次访视任务有的符合有的不符合准则是什么
@ -208,30 +231,69 @@ public class TrialStatService(
{
DictionaryCode = g.FirstOrDefault()?.DictionaryCode,
OverallTumorEvaluation = g.Key,
SubjectCount = g.Select(t => t.SubjectId).Distinct().Count()
Code = g.Key,
SubjectCodeList = g.Select(t => t.SubjectCode).Distinct().ToList()
}).ToList();
// 先把 resultList 转成内存字典
var resultDict = resultList.ToDictionary(r => r.OverallTumorEvaluation, r => r.SubjectCount);
var resultDict = resultList.ToDictionary(r => r.OverallTumorEvaluation, r => r.SubjectCodeList);
// 查询字典表,先把数据拉出来到内存,再合并
var dicList = _dictionaryRepository
var translateList = _dictionaryRepository
.Where(t => t.Parent.Code == dicName)
.Select(t => new
{
t.Code
t.Code,
t.Value,
})
.ToList()
.ToList()
.Select(t => new EfficacyEvaluationStatViewModel
{
DictionaryCode = dicName,
OverallTumorEvaluation = t.Code,
SubjectCount = resultDict.ContainsKey(t.Code) ? resultDict[t.Code] : 0
Code = t.Code, //方便找到首次PD的日期
OverallTumorEvaluation = t.Value,//翻译后的值
SubjectCodeList = resultDict.ContainsKey(t.Code) ? resultDict[t.Code] : new List<string>()
})
.ToList();
return dicList;
// cr +pr /总人数
var crAddPr = translateList.Where(t => t.OverallTumorEvaluation == "PR" || t.OverallTumorEvaluation == "CR").Sum(t => t.SubjectCount);
var orrPercent = totalSubjectCount > 0
? ((decimal)crAddPr / totalSubjectCount * 100).ToString("0.00") + "%"
: "0.00%";
var pdInfo = translateList
.WhereIf(criterion.CriterionType == CriterionType.IRECIST1Point1, t => t.OverallTumorEvaluation == "ICPD")
.WhereIf(criterion.CriterionType == CriterionType.IRECIST1Point1, t => t.OverallTumorEvaluation == "PD")
.FirstOrDefault();
var firstPdList = new List<FirstPdInfo>();
if (pdInfo != null)
{
firstPdList = list.Where(t => t.OverallTumorEvaluation == pdInfo.Code).GroupBy(t => t.SubjectCode)
.Select(g => new FirstPdInfo
{
SubjectCode = g.Key,
EarliestScanDate = g.Where(t => t.OverallTumorEvaluation == pdInfo.Code).OrderBy(t => t.VisitTaskNum).First().EarliestScanDate
})
.ToList();
foreach (var item in firstPdList)
{
if (baseLineDict.TryGetValue(item.SubjectCode, out var latestScanDate))
{
item.BaseLineLatestScanDate = latestScanDate;
}
}
}
return ResponseOutput.Ok(translateList, new { PDList = firstPdList, ORR = orrPercent });
}

View File

@ -13,6 +13,10 @@ public class DicomInstance : BaseFullDeleteAuditEntity, IEntitySeqId
[ForeignKey("StudyId")]
public DicomStudy DicomStudy { get; set; }
[JsonIgnore]
[ForeignKey("TrialId")]
public Trial Trial { get; set; }
[JsonIgnore]
public List<ReadingTableAnswerRowInfo> ReadingTableAnswerRowInfoList { get; set; }
#endregion

View File

@ -21,6 +21,7 @@ public class DicomStudy : BaseFullDeleteAuditEntity, IEntitySeqId
[ForeignKey("SubjectVisitId")]
public SubjectVisit SubjectVisit { get; set; }
[JsonIgnore]
public List<ReadingClinicalData> ReadingClinicalDataList { get; set; }