Merge branch 'Test_IRC_Net8' of https://gitea.frp.extimaging.com/XCKJ/irc-netcore-api into Test_IRC_Net8
continuous-integration/drone/push Build is pending
Details
continuous-integration/drone/push Build is pending
Details
he
commit
53149bf8a0
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@ -19,7 +19,7 @@
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<PackageReference Include="fo-dicom.Imaging.ImageSharp" Version="5.2.1" />
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<PackageReference Include="Microsoft.AspNetCore.Mvc.NewtonsoftJson" Version="8.0.10" />
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<PackageReference Include="AutoMapper" Version="13.0.1" />
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<PackageReference Include="Minio" Version="6.0.4" />
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<PackageReference Include="Minio" Version="6.0.3" />
|
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<PackageReference Include="My.Extensions.Localization.Json" Version="3.3.0">
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<TreatAsUsed>true</TreatAsUsed>
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</PackageReference>
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@ -41,11 +41,11 @@
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<PackageReference Include="FreeSpire.Doc" Version="12.2.0" />
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<PackageReference Include="ExcelDataReader" Version="3.7.0" />
|
||||
<PackageReference Include="ExcelDataReader.DataSet" Version="3.7.0" />
|
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<PackageReference Include="DistributedLock.Redis" Version="1.0.3" />
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<PackageReference Include="DistributedLock.Redis" Version="1.1.0" />
|
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<PackageReference Include="DistributedLock.SqlServer" Version="1.0.6" />
|
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<PackageReference Include="fo-dicom" Version="5.2.2" />
|
||||
<PackageReference Include="fo-dicom.Imaging.ImageSharp" Version="5.2.2" />
|
||||
<PackageReference Include="fo-dicom.Codecs" Version="5.16.3" />
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||||
<PackageReference Include="fo-dicom.Codecs" Version="5.16.4" />
|
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<PackageReference Include="IP2Region.Net" Version="2.0.2" />
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<PackageReference Include="MailKit" Version="4.11.0" />
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<PackageReference Include="Masa.Contrib.Service.MinimalAPIs" Version="1.0.0" />
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@ -53,7 +53,7 @@
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<PackageReference Include="Microsoft.AspNetCore.OpenApi" Version="8.0.10" />
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<PackageReference Include="MimeKit" Version="4.11.0" />
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<PackageReference Include="MiniExcel" Version="1.41.2" />
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<PackageReference Include="Minio" Version="6.0.5" />
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<PackageReference Include="Minio" Version="6.0.3" />
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<PackageReference Include="MiniWord" Version="0.9.2" />
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||||
<PackageReference Include="Serilog.AspNetCore" Version="9.0.0" />
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<PackageReference Include="My.Extensions.Localization.Json" Version="3.3.0">
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|
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@ -62,9 +62,9 @@
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<PackageReference Include="NPOI" Version="2.7.4" />
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<PackageReference Include="Panda.DynamicWebApi" Version="1.2.2" />
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||||
<PackageReference Include="RestSharp" Version="112.1.0" />
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||||
<PackageReference Include="SixLabors.ImageSharp" Version="3.1.10" />
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||||
<PackageReference Include="SixLabors.ImageSharp" Version="3.1.11" />
|
||||
<PackageReference Include="Swashbuckle.AspNetCore.Filters" Version="8.0.2" />
|
||||
<PackageReference Include="ZiggyCreatures.FusionCache" Version="2.3.0" />
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<PackageReference Include="ZiggyCreatures.FusionCache" Version="2.4.0" />
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</ItemGroup>
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<ItemGroup>
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@ -957,16 +957,6 @@
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<param name="_dictionaryService"></param>
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<returns></returns>
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</member>
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<member name="M:IRaCIS.Core.Application.Service.Common.ExcelExportService.GetAnalysisTaskList_Export(IRaCIS.Core.Application.ViewModel.VisitTaskQuery,IRaCIS.Core.Infra.EFCore.IRepository{IRaCIS.Core.Domain.Models.CommonDocument},IRaCIS.Application.Interfaces.IDictionaryService,IRaCIS.Core.Infra.EFCore.IRepository{IRaCIS.Core.Domain.Models.Trial})">
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<summary>
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一致性分析结果导出 7 8 分别是自身 和组件一致性
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</summary>
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<param name="inQuery"></param>
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<param name="_commonDocumentRepository"></param>
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<param name="_dictionaryService"></param>
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<param name="_trialRepository"></param>
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<returns></returns>
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</member>
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<member name="M:IRaCIS.Core.Application.Service.Common.ExcelExportService.GetTrialReadingCriterionCanExportDocumentList(System.Guid)">
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<summary>
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获取阅片标准可以导出的列表
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@ -1118,6 +1108,14 @@
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<param name="trialId"></param>
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<returns></returns>
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</member>
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<!-- Badly formed XML comment ignored for member "M:IRaCIS.Core.Application.Service.TrialImageDownloadService.TrialImageAddExtralField(System.Guid,IRaCIS.Core.Infra.EFCore.IRepository{IRaCIS.Core.Domain.Models.DicomInstance},IRaCIS.Core.Infra.EFCore.IRepository{IRaCIS.Core.Domain.Models.DicomStudy},IRaCIS.Core.Infra.EFCore.IRepository{IRaCIS.Core.Domain.Models.DicomSeries})" -->
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<member name="M:IRaCIS.Core.Application.Service.TrialImageDownloadService.DownloadDeleteTrialImage(System.Guid)">
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<summary>
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下载已经删除的影像
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</summary>
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<param name="trialId"></param>
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<returns></returns>
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</member>
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<member name="T:IRaCIS.Core.Application.Service.AttachmentService">
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<summary>
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医生文档关联关系维护
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@ -135,7 +135,7 @@ namespace IRaCIS.Core.Application.Service.Common
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QuestionAnswerList = g.Select(t => new QCQuestionAnswerExport() { Answer = t.Answer, QuestionName = t.QuesitonName, ShowOrder = t.ShowOrder, QuestionId = t.QuestionId }).OrderBy(t => t.ShowOrder).ToList()
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}).OrderBy(t => t.TrialSiteCode).ThenBy(t => t.SubjectCode).ThenBy(t => t.VisitNum).ThenBy(t=>t.CurrentQCEnum).ThenBy(t=>t.AuditTime).ToList();
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}).OrderBy(t => t.TrialSiteCode).ThenBy(t => t.SubjectCode).ThenBy(t => t.VisitNum).ThenBy(t => t.CurrentQCEnum).ThenBy(t => t.AuditTime).ToList();
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var exportInfo = (await _trialRepository.Where(t => t.Id == inQuery.TrialId).IgnoreQueryFilters().ProjectTo<ExcelExportInfo>(_mapper.ConfigurationProvider).FirstOrDefaultAsync()).IfNullThrowException();
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@ -2311,263 +2311,8 @@ namespace IRaCIS.Core.Application.Service.Common
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#region 通用阅片结果导出
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/// <summary>
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/// 一致性分析结果导出 7 8 分别是自身 和组件一致性
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/// </summary>
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/// <param name="inQuery"></param>
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/// <param name="_commonDocumentRepository"></param>
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/// <param name="_dictionaryService"></param>
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/// <param name="_trialRepository"></param>
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/// <returns></returns>
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[HttpPost]
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public async Task<IActionResult> GetAnalysisTaskList_Export(VisitTaskQuery inQuery,
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[FromServices] IRepository<CommonDocument> _commonDocumentRepository,
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[FromServices] IDictionaryService _dictionaryService,
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[FromServices] IRepository<Trial> _trialRepository)
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{
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//每次查询必须是单标准的
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var criterion = await _readingQuestionCriterionTrialRepository.Where(t => t.Id == inQuery.TrialReadingCriterionId).Select(t => new { t.CriterionType, t.CriterionName, t.ArbitrationRule }).FirstNotNullAsync();
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var query = _visitTaskRepository.Where(t => t.TrialId == inQuery.TrialId && t.TaskAllocationState == TaskAllocationState.Allocated && (t.TaskState == TaskState.Effect || t.TaskState == TaskState.Freeze))
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//一致性分析
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.WhereIf(inQuery.ReadingExportType == ExportResult.DetailedTableOfIntraReaderAnalysisResults, t => t.IsSelfAnalysis == true || t.IsSelfAnalysis == null)
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.WhereIf(inQuery.ReadingExportType == ExportResult.DetailedTableOfIntraReaderAnalysisResults, t => t.IsSelfAnalysis == null ? t.Subject.SubjectVisitTaskList.Any(u => u.IsSelfAnalysis == true && u.VisitTaskNum == t.VisitTaskNum && u.DoctorUserId == t.DoctorUserId && u.TrialReadingCriterionId == t.TrialReadingCriterionId) : true)
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.WhereIf(inQuery.ReadingExportType == ExportResult.DetailedTableOfInterReaderAnalysisResults, t => t.IsSelfAnalysis == false || t.IsSelfAnalysis == null)
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//访视和全局查询已签名完成的，裁判可以是未签名，未完成的
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.Where(t => (t.ReadingTaskState == ReadingTaskState.HaveSigned && (t.ReadingCategory == ReadingCategory.Visit || t.ReadingCategory == ReadingCategory.Global)) || t.ReadingCategory == ReadingCategory.Judge)
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.WhereIf(inQuery.TrialReadingCriterionId != null, t => t.TrialReadingCriterionId == inQuery.TrialReadingCriterionId)
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.WhereIf(inQuery.TrialSiteId != null, t => t.Subject.TrialSiteId == inQuery.TrialSiteId)
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.WhereIf(inQuery.IsUrgent != null, t => t.IsUrgent == inQuery.IsUrgent)
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.WhereIf(inQuery.DoctorUserId != null, t => t.DoctorUserId == inQuery.DoctorUserId)
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.WhereIf(inQuery.ReadingCategory != null, t => t.ReadingCategory == inQuery.ReadingCategory)
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//.WhereIf(inQuery.ReadingTaskState != null, t => t.ReadingTaskState == inQuery.ReadingTaskState)
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.WhereIf(inQuery.TaskAllocationState != null, t => t.TaskAllocationState == inQuery.TaskAllocationState)
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.WhereIf(inQuery.ArmEnum != null, t => t.ArmEnum == inQuery.ArmEnum)
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.WhereIf(!string.IsNullOrEmpty(inQuery.TrialSiteCode), t => (t.BlindTrialSiteCode.Contains(inQuery.TrialSiteCode!) && t.IsAnalysisCreate) || (t.Subject.TrialSite.TrialSiteCode.Contains(inQuery.TrialSiteCode!) && t.IsAnalysisCreate == false))
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.WhereIf(!string.IsNullOrEmpty(inQuery.TaskName), t => t.TaskName.Contains(inQuery.TaskName) || t.TaskBlindName.Contains(inQuery.TaskName))
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.WhereIf(!string.IsNullOrEmpty(inQuery.SubjectCode), t => t.Subject.Code.Contains(inQuery.SubjectCode))
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.WhereIf(inQuery.BeginAllocateDate != null, t => t.AllocateTime > inQuery.BeginAllocateDate)
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.WhereIf(inQuery.EndAllocateDate != null, t => t.AllocateTime < inQuery.EndAllocateDate);
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var list = await query.ProjectTo<AnalysisDynamicCommonExport>(_mapper.ConfigurationProvider,
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new
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{
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readingExportType = inQuery.ReadingExportType,
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criterionType = criterion.CriterionType,
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trialReadingCriterionId = inQuery.TrialReadingCriterionId,
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isEn_Us = _userInfo.IsEn_Us
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}).ToListAsync();
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list = list.OrderBy(t => t.SubjectCode).ThenBy(t => t.ArmEnum).ThenBy(t => t.VisitTaskNum).ToList();
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var exportInfo = (await _trialRepository.Where(t => t.Id == inQuery.TrialId).IgnoreQueryFilters().ProjectTo<ExcelExportInfo>(_mapper.ConfigurationProvider).FirstOrDefaultAsync()).IfNullThrowException();
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exportInfo.CriterionName = criterion.CriterionName;
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#region 处理系统标准存在疾病和整体肿瘤合并
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//如果是以合并后的找翻译字典，会少，所以必须放在前面
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var translateDicNameList = list.SelectMany(t => t.QuestionAnswerList).Where(t => t.TranslateDicName.IsNotNullOrEmpty()).Select(t => t.TranslateDicName).Distinct().ToList();
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//针对1.1 整体肿瘤评估 有的两列要合并一列
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if (criterion.CriterionType == CriterionType.RECIST1Point1 || criterion.CriterionType == CriterionType.RECIST1Pointt1_MB || criterion.CriterionType == CriterionType.IRECIST1Point1)
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{
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foreach (var item in list)
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{
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//处理合并表头
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var questionType = item.IsBaseline == true ? QuestionType.ExistDisease : QuestionType.Tumor;
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var findItem = item.QuestionAnswerList.Where(t => t.QuestionType == questionType).FirstOrDefault();
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if (findItem != null)
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{
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findItem.QuestionName = _userInfo.IsEn_Us ? "Overall Response" : "整体肿瘤评估";
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}
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if (item.IsBaseline == true)
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{
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item.QuestionAnswerList = item.QuestionAnswerList.Where(t => t.QuestionType != QuestionType.Tumor).ToList();
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}
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else
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{
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item.QuestionAnswerList = item.QuestionAnswerList.Where(t => t.QuestionType != QuestionType.ExistDisease).ToList();
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}
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}
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}
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else if (criterion.CriterionType == CriterionType.Lugano2014 || criterion.CriterionType == CriterionType.Lugano2014WithoutPET)
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{
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foreach (var item in list)
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{
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//处理合并表头
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var questionType = item.IsBaseline == true ? QuestionType.ExistDisease : QuestionType.ImgOncology;
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var findItem = item.QuestionAnswerList.Where(t => t.QuestionType == questionType).FirstOrDefault();
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if (findItem != null)
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{
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findItem.QuestionName = _userInfo.IsEn_Us ? "Overall Response" : "整体肿瘤评估";
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}
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if (item.IsBaseline == true)
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{
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item.QuestionAnswerList = item.QuestionAnswerList.Where(t => t.QuestionType != QuestionType.ImgOncology).ToList();
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}
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else
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{
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item.QuestionAnswerList = item.QuestionAnswerList.Where(t => t.QuestionType != QuestionType.ExistDisease).ToList();
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}
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}
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}
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else if (criterion.CriterionType == CriterionType.PCWG3)
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{
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}
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else if (criterion.CriterionType == CriterionType.SelfDefine)
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{
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//自定义的又问题名称重复 所以统一加上组名
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//有重复的就加，没有重复的就不加
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if (list.Any(t => t.QuestionAnswerList.Select(t => t.QuestionName).Count() != t.QuestionAnswerList.Select(t => t.QuestionName).Distinct().Count()))
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{
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foreach (var item in list)
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{
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foreach (var qs in item.QuestionAnswerList)
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{
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qs.QuestionName = qs.Group + "_" + qs.QuestionName;
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}
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}
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}
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}
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#endregion
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var export_Template = StaticData.Export.TrialSelfAnalysisList_Export;
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#region 自身一致性分析和组间一致性分析
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if (inQuery.ReadingExportType == ExportResult.DetailedTableOfIntraReaderAnalysisResults)
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{
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//找到非一致性分析的任务
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var selfExportList = list.Where(t => t.IsSelfAnalysis == null).ToList();
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//处理一致性分析结果是否和原始阅片是否一致
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foreach (var item in selfExportList)
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{
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//找到一致性分析的结果
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var selfAnalysisTask = list.Where(t => t.IsSelfAnalysis == true && t.SubjectCode == item.SubjectCode && t.VisitTaskNum == item.VisitTaskNum && t.TaskName == t.TaskName && t.UserName == item.UserName).FirstOrDefault();
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//将自身一致性分析的字段 赋值到访视任务这个字段
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item.IsAnalysisDiffToOriginalData = selfAnalysisTask?.IsAnalysisDiffToOriginalData;
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//处理再次阅片人的结果
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if (selfAnalysisTask != null)
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{
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var cloneQuestionAnswerList = selfAnalysisTask.QuestionAnswerList.Clone();
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foreach (var qItem in cloneQuestionAnswerList)
|
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{
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qItem.QuestionName = qItem.QuestionName + $"{(_userInfo.IsEn_Us ? "(Again)" : "(再次)")}";
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}
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item.QuestionAnswerList = item.QuestionAnswerList.Union(cloneQuestionAnswerList).ToList();
|
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}
|
||||
}
|
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|
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list = selfExportList;
|
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}
|
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else
|
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{
|
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export_Template = StaticData.Export.TrialGroupAnalysisList_Export;
|
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|
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var newList = new List<AnalysisDynamicCommonExport>();
|
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|
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foreach (var group in list.GroupBy(t => new { t.SubjectCode, t.VisitTaskNum, t.TaskName }).OrderBy(g => g.Key.SubjectCode).ThenBy(g => g.Key.VisitTaskNum))
|
||||
{
|
||||
var subjectVisitGroupList = group.ToList();
|
||||
|
||||
|
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//找到当前访视组间一致性分析的任务结果
|
||||
|
||||
var groupOtherTaskList = subjectVisitGroupList.Where(t => t.IsSelfAnalysis == false).ToList();
|
||||
|
||||
foreach (var subjectVisitTaskArm in subjectVisitGroupList.Where(t => t.IsSelfAnalysis == null).OrderBy(t => t.ArmEnum))
|
||||
{
|
||||
foreach (var otherTask in groupOtherTaskList)
|
||||
{
|
||||
//非一致性分析任务
|
||||
var cloneObj = subjectVisitTaskArm.Clone();
|
||||
|
||||
var otherTaskQuestionAnserList = otherTask.QuestionAnswerList.Clone();
|
||||
|
||||
foreach (var qItem in otherTaskQuestionAnserList)
|
||||
{
|
||||
qItem.QuestionName = qItem.QuestionName + $"{(_userInfo.IsEn_Us ? "(Again)" : "(再次)")}";
|
||||
}
|
||||
|
||||
//处理 再次阅片人，再次阅片人角色 两列
|
||||
var addQuestionList = new List<CommonQuesionInfo>();
|
||||
|
||||
addQuestionList.Add(new CommonQuesionInfo() { QuestionName = _userInfo.IsEn_Us ? "Reviwer(Again)" : "阅片人(再次)", QuestionValue = otherTask.UserName });
|
||||
addQuestionList.Add(new CommonQuesionInfo() { QuestionName = _userInfo.IsEn_Us ? "Reviwer Role(Again)" : "阅片人角色(再次)", QuestionValue = ((int)otherTask.ArmEnum).ToString(), TranslateDicName = "ArmEnum" });
|
||||
|
||||
|
||||
cloneObj.QuestionAnswerList = cloneObj.QuestionAnswerList.Union(addQuestionList).Union(otherTaskQuestionAnserList).ToList();
|
||||
|
||||
|
||||
cloneObj.IsGroupAnalysisDiffToOriginalData = cloneObj.ArmEnum == Arm.DoubleReadingArm1 ? otherTask.IsGroupDiffArm1 : otherTask.IsGroupDiffArm2;
|
||||
|
||||
newList.Add(cloneObj);
|
||||
}
|
||||
}
|
||||
}
|
||||
translateDicNameList.Add("ArmEnum");
|
||||
|
||||
list = newList;
|
||||
|
||||
}
|
||||
|
||||
#endregion
|
||||
|
||||
var columNameList = list.SelectMany(t => t.QuestionAnswerList).Where(t => t.QuestionName.IsNotNullOrEmpty()).Select(t => t.QuestionName).Distinct().ToList();
|
||||
|
||||
exportInfo.List = ExportExcelConverterDate.ConvertToClientTimeInObject(list.Where(t => t.ReadingCategory != ReadingCategory.Global).ToList(), _userInfo.TimeZoneId);
|
||||
exportInfo.CurrentTime = ExportExcelConverterDate.DateTimeInternationalToString(DateTime.Now, _userInfo.TimeZoneId);
|
||||
|
||||
var dynamicColumnConfig = new DynamicColumnConfig()
|
||||
{
|
||||
//可读的列表名行索引，不是{{}} 模板行索引
|
||||
AutoColumnTitleRowIndex = 2,
|
||||
AutoColumnStartIndex = 5,
|
||||
TempalteLastColumnIndex = 4,
|
||||
DynamicItemDicName = "TranslateDicName",
|
||||
DynamicItemValueName = "QuestionValue",
|
||||
DynamicItemTitleName = "QuestionName",
|
||||
DynamicListName = "QuestionAnswerList",
|
||||
RemoveColunmIndexList = new List<int>() { },
|
||||
ColumnIdNameList = columNameList.Select(t => new DynamicColumnConfig.ColumItem() { Id = Guid.Empty, Name = t }).ToList(),
|
||||
TranslateDicNameList = translateDicNameList ?? new List<string>()
|
||||
};
|
||||
|
||||
|
||||
var (memoryStream, fileName) = await ExcelExportHelper.DataExport_NpoiTestAsync(export_Template, exportInfo, _commonDocumentRepository, _hostEnvironment, _dictionaryService, typeof(AnalysisDynamicCommonExport), criterion.CriterionType, dynamicColumnConfig);
|
||||
|
||||
return new FileStreamResult(memoryStream, "application/vnd.openxmlformats-officedocument.spreadsheetml.sheet")
|
||||
{
|
||||
FileDownloadName = $"{exportInfo.ResearchProgramNo}_{exportInfo.CriterionName}_{fileName}_{DateTime.Now.ToString("yyyyMMddHHmmss")}.xlsx"
|
||||
};
|
||||
|
||||
}
|
||||
|
||||
|
||||
/// <summary>
|
||||
/// 获取阅片标准可以导出的列表
|
||||
|
|
@ -2898,7 +2643,8 @@ namespace IRaCIS.Core.Application.Service.Common
|
|||
{
|
||||
#region 外层问题处理
|
||||
|
||||
if (criterion.CriterionType == CriterionType.RECIST1Point1 || criterion.CriterionType == CriterionType.RECIST1Pointt1_MB || criterion.CriterionType == CriterionType.IRECIST1Point1)
|
||||
if (criterion.CriterionType == CriterionType.RECIST1Point1 || criterion.CriterionType == CriterionType.RECIST1Pointt1_MB
|
||||
|| criterion.CriterionType == CriterionType.IRECIST1Point1 || criterion.CriterionType == CriterionType.mRECISTHCC)
|
||||
{
|
||||
|
||||
fistLeveLNameList = trialConfigQuestionList.Select(t => new DynamicColumnConfig.ColumItem()
|
||||
|
|
@ -2941,7 +2687,8 @@ namespace IRaCIS.Core.Application.Service.Common
|
|||
var extralNameList = new List<DynamicColumnConfig.ColumItem>();
|
||||
|
||||
if (criterion.CriterionType == CriterionType.RECIST1Point1 || criterion.CriterionType == CriterionType.RECIST1Pointt1_MB
|
||||
|| criterion.CriterionType == CriterionType.IRECIST1Point1 || criterion.CriterionType == CriterionType.Lugano2014 || criterion.CriterionType == CriterionType.Lugano2014WithoutPET)
|
||||
|| criterion.CriterionType == CriterionType.IRECIST1Point1 || criterion.CriterionType == CriterionType.mRECISTHCC
|
||||
|| criterion.CriterionType == CriterionType.Lugano2014 || criterion.CriterionType == CriterionType.Lugano2014WithoutPET)
|
||||
{
|
||||
|
||||
//if(inQuery.ReadingExportType == ExportResult.DetailedTableOfLesions)
|
||||
|
|
@ -2982,7 +2729,8 @@ namespace IRaCIS.Core.Application.Service.Common
|
|||
var addLessionInfoList = new List<CommonQuesionInfo>();
|
||||
|
||||
if (criterion.CriterionType == CriterionType.RECIST1Point1 || criterion.CriterionType == CriterionType.RECIST1Pointt1_MB
|
||||
|| criterion.CriterionType == CriterionType.IRECIST1Point1 || criterion.CriterionType == CriterionType.Lugano2014 || criterion.CriterionType == CriterionType.Lugano2014WithoutPET)
|
||||
|| criterion.CriterionType == CriterionType.IRECIST1Point1 || criterion.CriterionType == CriterionType.mRECISTHCC
|
||||
|| criterion.CriterionType == CriterionType.Lugano2014 || criterion.CriterionType == CriterionType.Lugano2014WithoutPET)
|
||||
{
|
||||
//病灶编号 和病灶类型没有配置，但是需要有的
|
||||
addLessionInfoList.Add(new CommonQuesionInfo() { QuestionName = _userInfo.IsEn_Us ? "Lesion ID" : "病灶编号", QuestionValue = lession.LessionCode });
|
||||
|
|
@ -3022,7 +2770,8 @@ namespace IRaCIS.Core.Application.Service.Common
|
|||
#endregion
|
||||
|
||||
#region 不管是list 还是taskList 最终处理的数据都是list 处理好数据后合并
|
||||
if (criterion.CriterionType == CriterionType.RECIST1Point1 || criterion.CriterionType == CriterionType.RECIST1Pointt1_MB || criterion.CriterionType == CriterionType.IRECIST1Point1)
|
||||
if (criterion.CriterionType == CriterionType.RECIST1Point1 || criterion.CriterionType == CriterionType.RECIST1Pointt1_MB
|
||||
|| criterion.CriterionType == CriterionType.IRECIST1Point1 || criterion.CriterionType == CriterionType.mRECISTHCC)
|
||||
{
|
||||
//针对1.1 整体肿瘤评估 有的两列要合并一列
|
||||
foreach (var item in list)
|
||||
|
|
|
|||
|
|
@ -1,22 +1,30 @@
|
|||
using DocumentFormat.OpenXml.EMMA;
|
||||
using DocumentFormat.OpenXml.Office2010.Excel;
|
||||
using DocumentFormat.OpenXml.Office2013.Drawing.ChartStyle;
|
||||
using FellowOakDicom;
|
||||
using FellowOakDicom.Imaging;
|
||||
using FellowOakDicom.Imaging.Render;
|
||||
using FellowOakDicom.IO.Buffer;
|
||||
using IRaCIS.Core.Application.Helper;
|
||||
using IRaCIS.Core.Application.ViewModel;
|
||||
using IRaCIS.Core.Domain.Models;
|
||||
using MassTransit;
|
||||
using Microsoft.AspNetCore.Authorization;
|
||||
using Microsoft.AspNetCore.Hosting;
|
||||
using Microsoft.AspNetCore.Mvc;
|
||||
using MiniExcelLibs;
|
||||
using SharpCompress.Common;
|
||||
using System;
|
||||
using System.Collections.Generic;
|
||||
using System.Data;
|
||||
using System.Diagnostics;
|
||||
using System.Linq;
|
||||
using System.Text;
|
||||
using System.Text.RegularExpressions;
|
||||
using System.Threading.Tasks;
|
||||
using System.Web;
|
||||
using static IRaCIS.Core.Domain.Share.StaticData;
|
||||
using static Microsoft.EntityFrameworkCore.DbLoggerCategory;
|
||||
|
||||
namespace IRaCIS.Core.Application.Service
|
||||
{
|
||||
|
|
@ -243,11 +251,12 @@ namespace IRaCIS.Core.Application.Service
|
|||
/// <returns></returns>
|
||||
[HttpGet]
|
||||
[AllowAnonymous]
|
||||
public async Task<IResponseOutput> DownloadAndUploadTrialData(Guid trialId, [FromServices] IRepository<DicomInstance> _instanceRepository,
|
||||
public async Task<IResponseOutput> DownloadAndUploadTrialData(Guid trialId,
|
||||
[FromServices] IRepository<DicomInstance> _instanceRepository,
|
||||
[FromServices] IRepository<DicomStudy> _studyRepository,
|
||||
[FromServices] IRepository<DicomSeries> _seriesRepository)
|
||||
{
|
||||
var list = await _instanceRepository.Where(t => t.TrialId == trialId && t.SubjectVisitId == Guid.Parse("01000000-0a00-0242-bd20-08dcce543ded" ) && t.DicomStudy.ModalityForEdit == "IVUS")
|
||||
var list = await _instanceRepository.Where(t => t.TrialId == trialId && t.SubjectVisitId == Guid.Parse("01000000-0a00-0242-bd20-08dcce543ded") && t.DicomStudy.ModalityForEdit == "IVUS")
|
||||
.Select(t => new { t.SeriesId, t.StudyId, t.Id, t.Path }).ToListAsync();
|
||||
|
||||
int totalCount = list.Count;
|
||||
|
|
@ -288,7 +297,7 @@ namespace IRaCIS.Core.Application.Service
|
|||
await _instanceRepository.BatchUpdateNoTrackingAsync(t => t.Id == item.Id,
|
||||
u => new DicomInstance()
|
||||
{
|
||||
IsEncapsulated= syntax.IsEncapsulated,
|
||||
IsEncapsulated = syntax.IsEncapsulated,
|
||||
TransferSytaxUID = dirInfo.TransferSytaxUID,
|
||||
SOPClassUID = dirInfo.SOPClassUID,
|
||||
MediaStorageSOPClassUID = dirInfo.MediaStorageSOPClassUID,
|
||||
|
|
@ -334,6 +343,715 @@ namespace IRaCIS.Core.Application.Service
|
|||
return ResponseOutput.Ok();
|
||||
}
|
||||
|
||||
|
||||
/// <summary>
|
||||
/// 维护dir 需求新增的字段
|
||||
|
||||
/// </summary>
|
||||
/// <param name="trialId"></param>
|
||||
/// <param name="_instanceRepository"></param>
|
||||
/// <param name="_studyRepository"></param>
|
||||
/// <param name="_seriesRepository"></param>
|
||||
/// <returns></returns>
|
||||
public async Task<IResponseOutput> TrialImageAddExtralField(Guid trialId,
|
||||
[FromServices] IRepository<DicomInstance> _instanceRepository,
|
||||
[FromServices] IRepository<DicomStudy> _studyRepository,
|
||||
[FromServices] IRepository<DicomSeries> _seriesRepository)
|
||||
{
|
||||
// UPDATE DicomStudy
|
||||
//SET DicomStudyDate = CONVERT(char(8), StudyTime, 112), --yyyyMMdd
|
||||
// DicomStudyTime = REPLACE(CONVERT(char(8), StudyTime, 108), ':', ''); --HHmmss
|
||||
// where DicomStudyDate = ''
|
||||
|
||||
|
||||
//instance 找到传输语法为空的，然后分组
|
||||
var seriesList = _instanceRepository.Where(t => t.TrialId == trialId && t.TransferSytaxUID == "")
|
||||
//按照序列 和 NumberOfFrames 分组
|
||||
.GroupBy(t => new { t.NumberOfFrames, t.SeriesId })
|
||||
// 每个分组 取数据最小的一条
|
||||
.Select(g => new { g.Key.SeriesId, g.Key.NumberOfFrames, g.OrderBy(t => t.FileSize).First().Path }).ToList();
|
||||
|
||||
foreach (var item in seriesList)
|
||||
{
|
||||
var stream = await _oSSService.GetStreamFromOSSAsync(item.Path);
|
||||
|
||||
var dicomFile = DicomFile.Open(stream);
|
||||
|
||||
var pixelData = DicomPixelData.Create(dicomFile.Dataset);
|
||||
|
||||
//获取像素是否为封装形式
|
||||
var syntax = dicomFile.Dataset.InternalTransferSyntax;
|
||||
|
||||
//读取需要维护的值
|
||||
var transferSyntaxUID = dicomFile.FileMetaInfo.GetSingleValueOrDefault(DicomTag.TransferSyntaxUID, string.Empty);
|
||||
var mediaStorageSOPClassUID = dicomFile.FileMetaInfo.GetSingleValueOrDefault(DicomTag.MediaStorageSOPClassUID, string.Empty);
|
||||
var mediaStorageSOPInstanceUID = dicomFile.FileMetaInfo.GetSingleValueOrDefault(DicomTag.MediaStorageSOPInstanceUID, string.Empty);
|
||||
var sOPClassUID = dicomFile.Dataset.GetSingleValueOrDefault(DicomTag.SOPClassUID, string.Empty);
|
||||
|
||||
//维护序列层级四个字段 后再用sql 维护study series 时间拆分 和 MediaStorageSOPInstanceUID
|
||||
await _instanceRepository.BatchUpdateNoTrackingAsync(t => t.SeriesId == item.SeriesId, t => new DicomInstance()
|
||||
{
|
||||
IsEncapsulated = syntax.IsEncapsulated,
|
||||
TransferSytaxUID = transferSyntaxUID,
|
||||
MediaStorageSOPClassUID = mediaStorageSOPClassUID,
|
||||
SOPClassUID = sOPClassUID,
|
||||
});
|
||||
|
||||
}
|
||||
|
||||
return ResponseOutput.Ok();
|
||||
|
||||
}
|
||||
|
||||
|
||||
/// <summary>
|
||||
/// 下载已经删除的影像
|
||||
/// </summary>
|
||||
/// <param name="trialId"></param>
|
||||
/// <returns></returns>
|
||||
[HttpPost]
|
||||
[AllowAnonymous]
|
||||
public async Task<IResponseOutput> DownloadDeleteTrialImage(Guid trialId)
|
||||
{
|
||||
trialId = Guid.Parse("01000000-ac13-0242-6397-08dcd2d2a091");
|
||||
|
||||
var downloadInfo = _trialRepository.Where(t => t.Id == trialId, ignoreQueryFilters: true).Select(t => new
|
||||
{
|
||||
t.ResearchProgramNo,
|
||||
|
||||
VisitList = t.SubjectVisitList
|
||||
.Select(sv => new
|
||||
{
|
||||
TrialSiteCode = sv.TrialSite.TrialSiteCode,
|
||||
SubjectCode = sv.Subject.Code,
|
||||
VisitName = sv.VisitName,
|
||||
StudyList = sv.StudyList.Select(u => new
|
||||
{
|
||||
u.PatientId,
|
||||
u.StudyTime,
|
||||
u.StudyCode,
|
||||
|
||||
SeriesList = u.SeriesList.Select(z => new
|
||||
{
|
||||
z.Modality,
|
||||
z.SeriesNumber,
|
||||
|
||||
InstancePathList = z.DicomInstanceList.Where(t => t.IsDeleted == true || t.DicomSerie.IsDeleted == true || t.IsReading == false || t.DicomSerie.IsReading == false).Select(k => new
|
||||
{
|
||||
k.Path,
|
||||
k.FileSize
|
||||
}).ToList()
|
||||
})
|
||||
|
||||
}).ToList()
|
||||
}).ToList()
|
||||
|
||||
}).FirstOrDefault();
|
||||
|
||||
|
||||
var filesizes = downloadInfo.VisitList.SelectMany(t => t.StudyList).SelectMany(t => t.SeriesList).SelectMany(t => t.InstancePathList).Sum(t => t.FileSize);
|
||||
var count2 = downloadInfo.VisitList.SelectMany(t => t.StudyList).SelectMany(t => t.SeriesList).SelectMany(t => t.InstancePathList).Count();
|
||||
|
||||
Console.WriteLine($"下载总数量：{count2},总大小{filesizes}");
|
||||
|
||||
if (downloadInfo != null)
|
||||
{
|
||||
var downloadJobs = new List<(string Path, Func<Task> Job)>();
|
||||
|
||||
var rootFolder = @"E:\DownloadImage";
|
||||
|
||||
//var rootFolder = FileStoreHelper.GetDonwnloadImageFolder(_hostEnvironment);
|
||||
|
||||
// 获取无效字符（系统定义的）
|
||||
string invalidChars = new string(Path.GetInvalidFileNameChars()) + new string(Path.GetInvalidPathChars());
|
||||
|
||||
// 用正则表达式替换所有非法字符为下划线或空字符
|
||||
string pattern = $"[{Regex.Escape(invalidChars)}]";
|
||||
|
||||
var regexNo = Regex.Replace(downloadInfo.ResearchProgramNo, pattern, "_");
|
||||
|
||||
// 创建一个临时文件夹来存放文件
|
||||
string trialFolderPath = Path.Combine(rootFolder, $"{regexNo}_{NewId.NextGuid()}");
|
||||
Directory.CreateDirectory(trialFolderPath);
|
||||
|
||||
foreach (var visitItem in downloadInfo.VisitList)
|
||||
{
|
||||
if (visitItem.StudyList.Count() == 0)
|
||||
{
|
||||
continue;
|
||||
}
|
||||
|
||||
#region 处理 中心，受试者dicom non-dicom 文件夹层级
|
||||
|
||||
//var siteFolderPath = Path.Combine(trialFolderPath, visitItem.TrialSiteCode);
|
||||
//if (!Directory.Exists(siteFolderPath))
|
||||
//{
|
||||
// Directory.CreateDirectory(siteFolderPath);
|
||||
//}
|
||||
|
||||
#endregion
|
||||
|
||||
|
||||
foreach (var studyInfo in visitItem.StudyList)
|
||||
{
|
||||
// 遍历 Series
|
||||
foreach (var seriesInfo in studyInfo.SeriesList)
|
||||
{
|
||||
string studyDicomFolderPath = Path.Combine(trialFolderPath, $"{visitItem.SubjectCode}_{visitItem.VisitName}", $"{studyInfo.StudyCode}_{studyInfo.StudyTime?.ToString("yyyy-MM-dd")}", $"{seriesInfo.SeriesNumber}");
|
||||
|
||||
// 创建 影像 文件夹
|
||||
Directory.CreateDirectory(studyDicomFolderPath);
|
||||
|
||||
// 遍历 InstancePathList
|
||||
foreach (var instanceInfo in seriesInfo.InstancePathList)
|
||||
{
|
||||
// 复制文件到相应的文件夹
|
||||
string destinationPath = Path.Combine(studyDicomFolderPath, Path.GetFileName(instanceInfo.Path));
|
||||
|
||||
|
||||
//加入到下载任务里
|
||||
downloadJobs.Add((instanceInfo.Path, () => _oSSService.DownLoadFromOSSAsync(instanceInfo.Path, destinationPath)));
|
||||
|
||||
//下载到当前目录
|
||||
//await _oSSService.DownLoadFromOSSAsync(instanceInfo.Path, destinationPath);
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
}
|
||||
}
|
||||
|
||||
#region 异步方式处理
|
||||
|
||||
int totalCount = downloadJobs.Count;
|
||||
int downloadedCount = 0;
|
||||
|
||||
// 在 trialFolderPath 下面放一个失败记录文件
|
||||
string failedLogPath = Path.Combine(trialFolderPath, "failed_downloads.txt");
|
||||
|
||||
// 确保文件存在（如果之前有就清空）
|
||||
File.WriteAllText(failedLogPath, "");
|
||||
|
||||
foreach (var job in downloadJobs)
|
||||
{
|
||||
try
|
||||
{
|
||||
await job.Job();
|
||||
}
|
||||
catch (Exception ex)
|
||||
{
|
||||
|
||||
|
||||
string errorMessage = $"[{DateTime.Now:yyyy-MM-dd HH:mm:ss}] 下载失败: {job.Path}, 错误: {ex.Message}\r\n";
|
||||
|
||||
Console.WriteLine(errorMessage);
|
||||
|
||||
await File.AppendAllTextAsync(failedLogPath, errorMessage);
|
||||
}
|
||||
|
||||
downloadedCount++;
|
||||
|
||||
// 每处理50个，输出一次进度（或最后一个时也输出）
|
||||
if (downloadedCount % 50 == 0 || downloadedCount == totalCount)
|
||||
{
|
||||
Console.WriteLine($"已下载 {downloadedCount} / {totalCount} 个文件，完成 {(downloadedCount * 100.0 / totalCount):F2}%");
|
||||
}
|
||||
}
|
||||
#endregion
|
||||
|
||||
#region 多线程测试
|
||||
|
||||
//const int batchSize = 15;
|
||||
//int totalCount = downloadJobs.Count;
|
||||
//int downloadedCount = 0;
|
||||
|
||||
//for (int i = 0; i < downloadJobs.Count; i += batchSize)
|
||||
//{
|
||||
// var batch = downloadJobs.Skip(i).Take(batchSize).Select(job => job());
|
||||
|
||||
// await Task.WhenAll(batch);
|
||||
|
||||
// downloadedCount += batch.Count();
|
||||
|
||||
// Console.WriteLine($"已下载 {downloadedCount} / {totalCount} 个文件，完成 {(downloadedCount * 100.0 / totalCount):F2}%");
|
||||
//}
|
||||
#endregion
|
||||
|
||||
}
|
||||
|
||||
return ResponseOutput.Ok();
|
||||
|
||||
|
||||
}
|
||||
|
||||
|
||||
[AllowAnonymous]
|
||||
public async Task<IResponseOutput> ReadDicomDataWriteDB([FromServices] IRepository<DicomInstance> _instanceRepository)
|
||||
{
|
||||
var testPath = @"E:\WXT001";
|
||||
var path = @"E:\WXT001";
|
||||
|
||||
var files = Directory.GetFiles(testPath, "*", SearchOption.AllDirectories)
|
||||
// 只要没有后缀（Windows 显示类型是 .file）
|
||||
.Where(f => string.IsNullOrEmpty(Path.GetExtension(f)))
|
||||
.Where(f => Guid.TryParse(Path.GetFileNameWithoutExtension(f), out _))
|
||||
.ToList();
|
||||
|
||||
Console.WriteLine($"找到 {files.Count} 个 DICOM 文件");
|
||||
|
||||
int total = files.Count;
|
||||
int processed = 0;
|
||||
double lastPercent = 0;
|
||||
|
||||
var options = new ParallelOptions { MaxDegreeOfParallelism = 12 };
|
||||
|
||||
// 输出文件路径
|
||||
var outputFile = Path.Combine(@"D:\dicomWrite", $"{Guid.NewGuid()}_dicom_info.txt");
|
||||
|
||||
var outputErrorFile = Path.Combine(@"D:\dicomWrite", $"{Guid.NewGuid()}_dicom_info_error.txt");
|
||||
|
||||
// 用并发安全的写法（锁保护）
|
||||
var fileLock = new object();
|
||||
|
||||
foreach (var file in files)
|
||||
{
|
||||
try
|
||||
{
|
||||
var id = Guid.Parse(Path.GetFileNameWithoutExtension(file));
|
||||
var dicomFile = DicomFile.Open(file);
|
||||
|
||||
var dataset = dicomFile.Dataset;
|
||||
var fileMeta = dicomFile.FileMetaInfo;
|
||||
var syntax = dataset.InternalTransferSyntax;
|
||||
|
||||
|
||||
|
||||
//单位 设备 PatientId Visit 检查UId 帧数
|
||||
|
||||
var stationName = dataset.GetSingleValueOrDefault(DicomTag.StationName, string.Empty);
|
||||
|
||||
var institutionName = dataset.GetSingleValueOrDefault(DicomTag.InstitutionName, string.Empty);
|
||||
|
||||
var manufacturer = dataset.GetSingleValueOrDefault(DicomTag.Manufacturer, string.Empty);
|
||||
|
||||
//PatientID TrialCode_SubjectCode
|
||||
//var patientID = dataset.GetSingleValueOrDefault(DicomTag.PatientID, string.Empty);
|
||||
|
||||
//SubjectCode
|
||||
var clinicalTrialSubjectID = dataset.GetSingleValueOrDefault(DicomTag.ClinicalTrialSubjectID, string.Empty);
|
||||
//访视visitNum
|
||||
var clinicalTrialTimePointID = dataset.GetSingleValueOrDefault(DicomTag.ClinicalTrialTimePointID, string.Empty);
|
||||
var studyInstanceUID = dataset.GetSingleValueOrDefault(DicomTag.StudyInstanceUID, string.Empty);
|
||||
var seriesInstanceUID = dataset.GetSingleValueOrDefault(DicomTag.SeriesInstanceUID, string.Empty);
|
||||
var sOPInstanceUID = dataset.GetSingleValueOrDefault(DicomTag.SOPInstanceUID, string.Empty);
|
||||
|
||||
var numberOfFrames = dataset.GetSingleValueOrDefault(DicomTag.NumberOfFrames, 1);
|
||||
|
||||
|
||||
// 传输语法
|
||||
var transferSyntaxUID = fileMeta.GetSingleValueOrDefault(DicomTag.TransferSyntaxUID, string.Empty);
|
||||
var sOPClassUID = dataset.GetSingleValueOrDefault(DicomTag.SOPClassUID, string.Empty);
|
||||
var mediaStorageSOPClassUID = fileMeta.GetSingleValueOrDefault(DicomTag.MediaStorageSOPClassUID, string.Empty);
|
||||
|
||||
var mediaStorageSOPInstanceUID = fileMeta.GetSingleValueOrDefault(DicomTag.MediaStorageSOPInstanceUID, string.Empty);
|
||||
|
||||
|
||||
// 拼接一行 CSV 格式
|
||||
var line = string.Join(",",
|
||||
id,
|
||||
stationName,
|
||||
institutionName,
|
||||
manufacturer,
|
||||
clinicalTrialSubjectID,
|
||||
clinicalTrialTimePointID,
|
||||
studyInstanceUID,
|
||||
seriesInstanceUID,
|
||||
sOPInstanceUID,
|
||||
numberOfFrames,
|
||||
transferSyntaxUID,
|
||||
sOPClassUID,
|
||||
mediaStorageSOPClassUID,
|
||||
mediaStorageSOPInstanceUID
|
||||
|
||||
);
|
||||
|
||||
|
||||
await File.AppendAllTextAsync(outputFile, line + Environment.NewLine);
|
||||
|
||||
await _instanceRepository.BatchUpdateNoTrackingAsync(
|
||||
t => t.Id == id,
|
||||
t => new DicomInstance
|
||||
{
|
||||
IsEncapsulated = syntax.IsEncapsulated,
|
||||
TransferSytaxUID = transferSyntaxUID,
|
||||
MediaStorageSOPClassUID = mediaStorageSOPClassUID,
|
||||
SOPClassUID = sOPClassUID,
|
||||
MediaStorageSOPInstanceUID = mediaStorageSOPInstanceUID
|
||||
}, false);
|
||||
}
|
||||
catch (Exception ex)
|
||||
{
|
||||
var errorMsg = $"{DateTime.Now}❌ {file} 解析失败: {ex.Message}";
|
||||
Console.WriteLine(errorMsg);
|
||||
|
||||
await File.AppendAllTextAsync(outputErrorFile, errorMsg + Environment.NewLine);
|
||||
}
|
||||
finally
|
||||
{
|
||||
var done = Interlocked.Increment(ref processed);
|
||||
double percent = done * 100.0 / total;
|
||||
|
||||
// 只在进度提升 >= 1% 时打印
|
||||
if (percent - lastPercent >= 5.0 || done == total)
|
||||
{
|
||||
lastPercent = percent;
|
||||
Console.WriteLine($"{DateTime.Now} 进度: {done}/{total} ({percent:F2}%)");
|
||||
}
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
return ResponseOutput.Ok();
|
||||
}
|
||||
|
||||
#region 维护已经下载本地的数据
|
||||
|
||||
[AllowAnonymous]
|
||||
public async Task<IResponseOutput> ReadExcelData([FromServices] IRepository<DicomInstance> _instanceRepository)
|
||||
{
|
||||
var rows = await MiniExcel.QueryAsync<DicomSOPInfo>(@"C:\Users\hang\Desktop\维护数据读取.xlsx");
|
||||
|
||||
rows = rows.Where(t => !string.IsNullOrEmpty(t.InstanceId.ToString())).ToList();
|
||||
|
||||
int total = rows.Count();
|
||||
int processed = 0;
|
||||
double lastPercent = 0;
|
||||
|
||||
var outputErrorFile = Path.Combine(@"D:\dicomWrite", $"{Guid.NewGuid()}_dicom_info_error.txt");
|
||||
|
||||
foreach (var item in rows)
|
||||
{
|
||||
|
||||
|
||||
try
|
||||
{
|
||||
await _instanceRepository.BatchUpdateNoTrackingAsync(
|
||||
t => t.Id == item.InstanceId,
|
||||
t => new DicomInstance
|
||||
{
|
||||
|
||||
IsEncapsulated = item.IsEncapsulated,
|
||||
TransferSytaxUID = item.TransferSyntaxUID,
|
||||
MediaStorageSOPClassUID = item.MediaStorageSOPClassUID,
|
||||
SOPClassUID = item.SOPClassUID,
|
||||
MediaStorageSOPInstanceUID = item.MediaStorageSOPInstanceUID
|
||||
}, false);
|
||||
}
|
||||
catch (Exception ex)
|
||||
{
|
||||
|
||||
var errorMsg = $"{item.InstanceId} {DateTime.Now} 更新失败: {ex.Message}";
|
||||
Console.WriteLine(errorMsg);
|
||||
|
||||
await File.AppendAllTextAsync(outputErrorFile, errorMsg + Environment.NewLine);
|
||||
}
|
||||
finally
|
||||
{
|
||||
processed++;
|
||||
double percent = processed * 100.0 / total;
|
||||
|
||||
// 每提升 5% 或完成时输出
|
||||
if (percent - lastPercent >= 2.0 || processed == total)
|
||||
{
|
||||
lastPercent = percent;
|
||||
Console.WriteLine($"{DateTime.Now} 进度: {processed}/{total} ({percent:F2}%)");
|
||||
}
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
return ResponseOutput.Ok();
|
||||
}
|
||||
|
||||
public class DicomSOPInfo
|
||||
{
|
||||
public Guid InstanceId { get; set; }
|
||||
|
||||
|
||||
public string TransferSyntaxUID { get; set; }
|
||||
|
||||
public string SOPClassUID { get; set; }
|
||||
|
||||
public string MediaStorageSOPClassUID { get; set; }
|
||||
|
||||
public string MediaStorageSOPInstanceUID { get; set; }
|
||||
|
||||
public bool IsEncapsulated => DicomTransferSyntax.Lookup(DicomUID.Parse(TransferSyntaxUID)).IsEncapsulated;
|
||||
|
||||
|
||||
|
||||
}
|
||||
|
||||
|
||||
[AllowAnonymous]
|
||||
public async Task<IResponseOutput> ReadExcelImageDataInstanceIsReading([FromServices] IRepository<DicomInstance> _instanceRepository,
|
||||
[FromServices] IRepository<DicomSeries> _seriesRepository,
|
||||
[FromServices] IRepository<DicomStudy> _studyRepository)
|
||||
{
|
||||
|
||||
var trialId = Guid.Parse("01000000-ac13-0242-6397-08dcd2d2a091");
|
||||
|
||||
var rows = await MiniExcel.QueryAsync<DicomSOPInstanceInfo>(@"C:\Users\hang\Desktop\instanceReading.xlsx");
|
||||
|
||||
rows = rows.Where(t => !string.IsNullOrEmpty(t.SopInstanceUid) && t.SopInstanceUid.Length > 15).ToList();
|
||||
|
||||
var outputErrorFile = Path.Combine(@"D:\dicomWrite", $"{Guid.NewGuid()}_dicom_info_error.txt");
|
||||
|
||||
|
||||
//foreach (var batch in rows.Chunk(20))
|
||||
//{
|
||||
// var sopUids = batch.Select(x => x.SopInstanceUid).ToList();
|
||||
|
||||
// try
|
||||
// {
|
||||
// await _instanceRepository.BatchUpdateNoTrackingAsync(
|
||||
// t => sopUids.Contains(t.SopInstanceUid) && t.TrialId == trialId,
|
||||
// t => new DicomInstance
|
||||
// {
|
||||
// IsReading = true,
|
||||
// IsDeleted = false
|
||||
// }, false);
|
||||
|
||||
|
||||
// await _seriesRepository.BatchUpdateNoTrackingAsync(
|
||||
// t => t.DicomInstanceList.Any(t => sopUids.Contains(t.SopInstanceUid)) && t.TrialId == trialId,
|
||||
// t => new DicomSeries
|
||||
// {
|
||||
// IsReading = true,
|
||||
// IsDeleted = false
|
||||
// }, false);
|
||||
// }
|
||||
// catch (Exception ex)
|
||||
// {
|
||||
// var errorMsg = $"{string.Join(",", sopUids)} {DateTime.Now} 批量更新失败: {ex.Message}";
|
||||
// Console.WriteLine(errorMsg);
|
||||
// await File.AppendAllTextAsync(outputErrorFile, errorMsg + Environment.NewLine);
|
||||
// }
|
||||
//}
|
||||
|
||||
//找到该项目的检查，实时统计数量，并且回更数据库
|
||||
|
||||
var studyList = _studyRepository.Where(t => t.TrialId == trialId && (t.SeriesCount != t.SeriesList.Count() || t.InstanceCount != t.InstanceList.Count()))
|
||||
.Select(t => new
|
||||
{
|
||||
t.Id,
|
||||
t.StudyCode,
|
||||
DBSeriesCount = t.SeriesCount,
|
||||
DBInstanceCount = t.InstanceCount,
|
||||
|
||||
ActrualSeriesCount = t.SeriesList.Count(),
|
||||
|
||||
ActrualInstanceCount = t.InstanceList.Count(),
|
||||
|
||||
}).ToList();
|
||||
|
||||
|
||||
var seriesList = _seriesRepository.Where(t => t.TrialId == trialId && t.InstanceCount != t.DicomInstanceList.Count())
|
||||
.Select(t => new
|
||||
{
|
||||
SeriesId = t.Id,
|
||||
t.DicomStudy.StudyCode,
|
||||
DBInstanceCount = t.InstanceCount,
|
||||
ActrualInstanceCount = t.DicomInstanceList.Count(),
|
||||
|
||||
}).ToList();
|
||||
|
||||
|
||||
await File.AppendAllTextAsync(outputErrorFile, studyList.ToJsonStr() + Environment.NewLine);
|
||||
|
||||
await File.AppendAllTextAsync(outputErrorFile, seriesList.ToJsonStr() + Environment.NewLine);
|
||||
|
||||
return ResponseOutput.Ok();
|
||||
}
|
||||
|
||||
public class DicomSOPInstanceInfo
|
||||
{
|
||||
public string SopInstanceUid { get; set; }
|
||||
|
||||
|
||||
}
|
||||
|
||||
#endregion
|
||||
|
||||
|
||||
#region 通过Excel 读取未下载的，边下载边维护数据
|
||||
|
||||
[AllowAnonymous]
|
||||
public async Task<IResponseOutput> WriteNeedDealData([FromServices] IRepository<DicomInstance> _instanceRepository)
|
||||
{
|
||||
|
||||
#region 获取差集数据
|
||||
//var rows = await MiniExcel.QueryAsync<DicomSOPInfo>(@"C:\Users\hang\Desktop\维护数据读取.xlsx");
|
||||
|
||||
//rows = rows.Where(t => !string.IsNullOrEmpty(t.InstanceId.ToString())).ToList();
|
||||
|
||||
//var allRows = await MiniExcel.QueryAsync<NeedDealInstanceInfo>(@"C:\Users\hang\Desktop\AllData.xlsx");
|
||||
|
||||
//allRows = allRows.Where(t => !string.IsNullOrEmpty(t.InstanceId.ToString())).ToList();
|
||||
|
||||
//var needDealRows = allRows.Where(t => !rows.Select(c => c.InstanceId).Contains(t.InstanceId)).ToList();
|
||||
|
||||
//var outputFile = Path.Combine(@"D:\dicomWrite", $"{Guid.NewGuid()}_dicom_info.txt");
|
||||
|
||||
//foreach (var item in needDealRows)
|
||||
//{
|
||||
// var line = string.Join(",", item.InstanceId, item.Path);
|
||||
|
||||
// await File.AppendAllTextAsync(outputFile, line + Environment.NewLine);
|
||||
//}
|
||||
|
||||
#endregion
|
||||
|
||||
var folder = FileStoreHelper.GetIRaCISRootDataFolder(_hostEnvironment);
|
||||
|
||||
var needDealRows = await MiniExcel.QueryAsync<NeedDealInstanceInfo>(Path.Combine(folder, "needDownload.xlsx"));
|
||||
|
||||
needDealRows = needDealRows.Where(t => !string.IsNullOrEmpty(t.InstanceId.ToString())).ToList();
|
||||
|
||||
|
||||
|
||||
var outputFile = Path.Combine(folder, $"{Guid.NewGuid()}_dicom_info.txt");
|
||||
|
||||
var outputErrorFile = Path.Combine(folder, $"{Guid.NewGuid()}_dicom_info_error.txt");
|
||||
|
||||
int total = needDealRows.Count();
|
||||
|
||||
Console.WriteLine($"需要处理数量{total}");
|
||||
|
||||
int processed = 0;
|
||||
double lastPercent = 0;
|
||||
|
||||
foreach (var item in needDealRows)
|
||||
{
|
||||
|
||||
try
|
||||
{
|
||||
await using var stream = await _oSSService.GetStreamFromOSSAsync(item.Path);
|
||||
|
||||
var dicomFile = DicomFile.Open(stream);
|
||||
|
||||
var dataset = dicomFile.Dataset;
|
||||
var fileMeta = dicomFile.FileMetaInfo;
|
||||
|
||||
var pixelData = DicomPixelData.Create(dicomFile.Dataset);
|
||||
|
||||
//获取像素是否为封装形式
|
||||
var syntax = dicomFile.Dataset.InternalTransferSyntax;
|
||||
|
||||
var stationName = dataset.GetSingleValueOrDefault(DicomTag.StationName, string.Empty);
|
||||
|
||||
var institutionName = dataset.GetSingleValueOrDefault(DicomTag.InstitutionName, string.Empty);
|
||||
|
||||
var manufacturer = dataset.GetSingleValueOrDefault(DicomTag.Manufacturer, string.Empty);
|
||||
|
||||
//PatientID TrialCode_SubjectCode
|
||||
//var patientID = dataset.GetSingleValueOrDefault(DicomTag.PatientID, string.Empty);
|
||||
|
||||
//SubjectCode
|
||||
var clinicalTrialSubjectID = dataset.GetSingleValueOrDefault(DicomTag.ClinicalTrialSubjectID, string.Empty);
|
||||
//访视visitNum
|
||||
var clinicalTrialTimePointID = dataset.GetSingleValueOrDefault(DicomTag.ClinicalTrialTimePointID, string.Empty);
|
||||
var studyInstanceUID = dataset.GetSingleValueOrDefault(DicomTag.StudyInstanceUID, string.Empty);
|
||||
var seriesInstanceUID = dataset.GetSingleValueOrDefault(DicomTag.SeriesInstanceUID, string.Empty);
|
||||
var sOPInstanceUID = dataset.GetSingleValueOrDefault(DicomTag.SOPInstanceUID, string.Empty);
|
||||
|
||||
var numberOfFrames = dataset.GetSingleValueOrDefault(DicomTag.NumberOfFrames, 1);
|
||||
|
||||
|
||||
// 传输语法
|
||||
var transferSyntaxUID = fileMeta.GetSingleValueOrDefault(DicomTag.TransferSyntaxUID, string.Empty);
|
||||
var sOPClassUID = dataset.GetSingleValueOrDefault(DicomTag.SOPClassUID, string.Empty);
|
||||
var mediaStorageSOPClassUID = fileMeta.GetSingleValueOrDefault(DicomTag.MediaStorageSOPClassUID, string.Empty);
|
||||
|
||||
var mediaStorageSOPInstanceUID = fileMeta.GetSingleValueOrDefault(DicomTag.MediaStorageSOPInstanceUID, string.Empty);
|
||||
|
||||
|
||||
var line = string.Join(",",
|
||||
item.InstanceId,
|
||||
stationName,
|
||||
institutionName,
|
||||
manufacturer,
|
||||
clinicalTrialSubjectID,
|
||||
clinicalTrialTimePointID,
|
||||
studyInstanceUID,
|
||||
seriesInstanceUID,
|
||||
sOPInstanceUID,
|
||||
numberOfFrames,
|
||||
transferSyntaxUID,
|
||||
sOPClassUID,
|
||||
mediaStorageSOPClassUID,
|
||||
mediaStorageSOPInstanceUID
|
||||
|
||||
);
|
||||
|
||||
|
||||
await File.AppendAllTextAsync(outputFile, line + Environment.NewLine);
|
||||
|
||||
//维护序列层级四个字段 后再用sql 维护study series 时间拆分 和 MediaStorageSOPInstanceUID
|
||||
await _instanceRepository.BatchUpdateNoTrackingAsync(
|
||||
t => t.Id == item.InstanceId,
|
||||
t => new DicomInstance
|
||||
{
|
||||
IsEncapsulated = syntax.IsEncapsulated,
|
||||
TransferSytaxUID = transferSyntaxUID,
|
||||
MediaStorageSOPClassUID = mediaStorageSOPClassUID,
|
||||
SOPClassUID = sOPClassUID,
|
||||
MediaStorageSOPInstanceUID = mediaStorageSOPInstanceUID
|
||||
}, false);
|
||||
}
|
||||
catch (Exception ex)
|
||||
{
|
||||
|
||||
var errorMsg = $"{DateTime.Now} ❌ 失败: {ex.Message} | InstanceId={item.InstanceId}, Path={item.Path}";
|
||||
|
||||
Console.WriteLine(errorMsg);
|
||||
|
||||
await File.AppendAllTextAsync(outputErrorFile, errorMsg + Environment.NewLine);
|
||||
}
|
||||
finally
|
||||
{
|
||||
processed++;
|
||||
double percent = processed * 100.0 / total;
|
||||
|
||||
// 每提升 5% 或完成时输出
|
||||
if (percent - lastPercent >= 2.0 || processed == total)
|
||||
{
|
||||
lastPercent = percent;
|
||||
Console.WriteLine($"{DateTime.Now} 进度: {processed}/{total} ({percent:F2}%)");
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
}
|
||||
|
||||
return ResponseOutput.Ok();
|
||||
}
|
||||
|
||||
public class NeedDealInstanceInfo
|
||||
{
|
||||
public Guid InstanceId { get; set; }
|
||||
|
||||
public string Path { get; set; }
|
||||
}
|
||||
#endregion
|
||||
}
|
||||
|
||||
}
|
||||
|
|
@ -435,7 +435,7 @@ namespace IRaCIS.Core.Application.Service.ImageAndDoc
|
|||
studyMonitor.RecordPath = incommand.RecordPath;
|
||||
studyMonitor.FileSize = incommand.Study.SeriesList.SelectMany(t => t.InstanceList).Sum(t => t.FileSize);
|
||||
|
||||
var studyId = IdentifierHelper.CreateGuid(incommand.Study.StudyInstanceUid, incommand.TrialId.ToString());
|
||||
var studyId = IdentifierHelper.CreateGuid(incommand.Study.StudyInstanceUid, incommand.TrialId.ToString(), visiTaskId.ToString());
|
||||
var findStudy = await _taskStudyRepository.FirstOrDefaultAsync(t => t.Id == studyId);
|
||||
|
||||
|
||||
|
|
@ -471,7 +471,7 @@ namespace IRaCIS.Core.Application.Service.ImageAndDoc
|
|||
}
|
||||
|
||||
|
||||
study.Id = IdentifierHelper.CreateGuid(incommand.Study.StudyInstanceUid, incommand.TrialId.ToString(), visiTaskId.ToString());
|
||||
study.Id = studyId;
|
||||
study.TrialId = incommand.TrialId;
|
||||
study.SubjectId = incommand.SubjectId;
|
||||
study.VisitTaskId = visiTaskId;
|
||||
|
|
@ -568,29 +568,41 @@ namespace IRaCIS.Core.Application.Service.ImageAndDoc
|
|||
//新的序列 那么 检查的序列数量+1
|
||||
findStudy.SeriesCount += 1;
|
||||
}
|
||||
else
|
||||
{
|
||||
//该序列掉了instance
|
||||
dicomSeries.InstanceCount += seriesItem.InstanceList.Count;
|
||||
}
|
||||
//else
|
||||
//{
|
||||
// //该序列掉了instance
|
||||
// dicomSeries.InstanceCount += seriesItem.InstanceList.Count;
|
||||
//}
|
||||
|
||||
//找到该序列已经存在的instanceId
|
||||
var existInstanceIdList = _taskInstanceRepository.Where(t => t.SeriesId == dicomSeries.Id).Select(t => t.Id).ToList();
|
||||
|
||||
foreach (var instanceItem in seriesItem.InstanceList)
|
||||
{
|
||||
var insntance = _mapper.Map<TaskInstance>(instanceItem);
|
||||
insntance.Id = IdentifierHelper.CreateGuid(insntance.StudyInstanceUid, insntance.SeriesInstanceUid, insntance.SopInstanceUid, trialId.ToString(), visiTaskId.ToString());
|
||||
insntance.StudyId = findStudy.Id;
|
||||
insntance.SeriesId = dicomSeries.Id;
|
||||
|
||||
insntance.TrialId = incommand.TrialId;
|
||||
insntance.SubjectId = incommand.SubjectId;
|
||||
insntance.VisitTaskId = visiTaskId;
|
||||
var instanceId = IdentifierHelper.CreateGuid(insntance.StudyInstanceUid, insntance.SeriesInstanceUid, insntance.SopInstanceUid, trialId.ToString(), visiTaskId.ToString());
|
||||
|
||||
|
||||
if (!existInstanceIdList.Any(t => t == instanceId))
|
||||
{
|
||||
insntance.Id = instanceId;
|
||||
insntance.StudyId = findStudy.Id;
|
||||
insntance.SeriesId = dicomSeries.Id;
|
||||
|
||||
insntance.TrialId = incommand.TrialId;
|
||||
insntance.SubjectId = incommand.SubjectId;
|
||||
insntance.VisitTaskId = visiTaskId;
|
||||
|
||||
await _taskInstanceRepository.AddAsync(insntance);
|
||||
|
||||
dicomSeries.InstanceCount++;
|
||||
findStudy.InstanceCount++;
|
||||
}
|
||||
|
||||
await _taskInstanceRepository.AddAsync(insntance);
|
||||
}
|
||||
|
||||
|
||||
// 不管是新的序列 还是 该序列 掉了Instance 重传的时候 检查的instance 数量都会增加
|
||||
findStudy.InstanceCount += seriesItem.InstanceList.Count;
|
||||
//findStudy.InstanceCount += seriesItem.InstanceList.Count;
|
||||
|
||||
}
|
||||
|
||||
|
|
|
|||
|
|
@ -211,6 +211,7 @@ namespace IRaCIS.Core.Application.Service
|
|||
|
||||
//测试项目 可以加入 测试用户 或者内部正式用户
|
||||
.WhereIf(trialType == TrialType.NoneOfficial, t => t.IdentityUser.IsTestUser == true || (t.IdentityUser.IsTestUser == false && t.IdentityUser.IsZhiZhun))
|
||||
.Where(t => t.IdentityUser.Status == UserStateEnum.Enable && t.IsUserRoleDisabled == false)
|
||||
.Where(t => userTypeEnums.Contains(t.UserTypeEnum))
|
||||
.WhereIf(inQuery.UserTypeEnum != null, t => t.UserTypeEnum == inQuery.UserTypeEnum)
|
||||
.WhereIf(!string.IsNullOrWhiteSpace(inQuery.UserRealName), t => t.IdentityUser.FullName.Contains(inQuery.UserRealName))
|
||||
|
|
|
|||
|
|
@ -31,12 +31,12 @@
|
|||
<PackageReference Include="Hangfire.Core" Version="1.8.18" />
|
||||
<PackageReference Include="Microsoft.Extensions.Localization.Abstractions" Version="8.0.10" />
|
||||
<PackageReference Include="Microsoft.Extensions.Logging.Debug" Version="8.0.1" />
|
||||
<PackageReference Include="Microsoft.EntityFrameworkCore.SqlServer" Version="8.0.15" />
|
||||
<PackageReference Include="Microsoft.EntityFrameworkCore.Design" Version="8.0.15">
|
||||
<PackageReference Include="Microsoft.EntityFrameworkCore.SqlServer" Version="8.0.19" />
|
||||
<PackageReference Include="Microsoft.EntityFrameworkCore.Design" Version="8.0.19">
|
||||
<PrivateAssets>all</PrivateAssets>
|
||||
<IncludeAssets>runtime; build; native; contentfiles; analyzers; buildtransitive</IncludeAssets>
|
||||
</PackageReference>
|
||||
<PackageReference Include="Microsoft.EntityFrameworkCore.Tools" Version="8.0.10">
|
||||
<PackageReference Include="Microsoft.EntityFrameworkCore.Tools" Version="8.0.19">
|
||||
<PrivateAssets>all</PrivateAssets>
|
||||
<IncludeAssets>runtime; build; native; contentfiles; analyzers; buildtransitive</IncludeAssets>
|
||||
</PackageReference>
|
||||
|
|
|
|||
|
|
@ -50,10 +50,10 @@
|
|||
|
||||
<ItemGroup>
|
||||
<PackageReference Include="Fluid.Core" Version="2.21.0" />
|
||||
<PackageReference Include="Microsoft.EntityFrameworkCore" Version="8.0.15" />
|
||||
<PackageReference Include="Microsoft.EntityFrameworkCore.Abstractions" Version="8.0.15" />
|
||||
<PackageReference Include="Microsoft.EntityFrameworkCore" Version="8.0.19" />
|
||||
<PackageReference Include="Microsoft.EntityFrameworkCore.Abstractions" Version="8.0.19" />
|
||||
<PackageReference Include="Npgsql.EntityFrameworkCore.PostgreSQL" Version="8.0.11" />
|
||||
<PackageReference Include="Microsoft.EntityFrameworkCore.Design" Version="8.0.15">
|
||||
<PackageReference Include="Microsoft.EntityFrameworkCore.Design" Version="8.0.19">
|
||||
<PrivateAssets>all</PrivateAssets>
|
||||
<IncludeAssets>runtime; build; native; contentfiles; analyzers; buildtransitive</IncludeAssets>
|
||||
</PackageReference>
|
||||
|
|
|
|||
Loading…
Reference in New Issue