IR上传接口修改

IRC_NewDev
hang 2024-05-21 14:29:13 +08:00
parent bb36c67159
commit 57600cbad1
4 changed files with 453 additions and 22 deletions

View File

@ -157,19 +157,19 @@ namespace IRaCIS.Core.Application.Contracts
public Guid? VisitTaskId { get; set; }
public bool? IsDicom { get; set; }
public bool? IsDicom { get; set; }
public string? Uploader { get; set; }
public string? Uploader { get; set; }
public bool? IsSuccess { get; set; }
public bool? IsSuccess { get; set; }
public string? StudyCode { get; set; }
}
}
public class PreArchiveDicomStudyCommand
{
//public string StudyInstanceUid { get; set; }
//public string StudyInstanceUid { get; set; }
[NotDefault]
public Guid TrialId { get; set; }
@ -180,7 +180,7 @@ namespace IRaCIS.Core.Application.Contracts
[NotDefault]
public Guid SubjectVisitId { get; set; }
public decimal FileSize { get; set; }
public bool IsDicomReUpload { get; set; }
@ -189,6 +189,23 @@ namespace IRaCIS.Core.Application.Contracts
public int FileCount { get; set; }
}
public class TaskArchiveStudyCommand
{
[NotDefault]
public Guid TrialId { get; set; }
[NotDefault]
public Guid SubjectId { get; set; }
[NotDefault]
public Guid StudyMonitorId { get; set; }
public int FailedFileCount { get; set; }
public string RecordPath { get; set; } = string.Empty;
public AddOrUpdateStudyDto Study { get; set; }
}
public class NewArchiveStudyCommand
{
[NotDefault]
@ -200,23 +217,23 @@ namespace IRaCIS.Core.Application.Contracts
[NotDefault]
public Guid SubjectVisitId { get; set; }
[NotDefault]
public Guid StudyMonitorId { get; set; }
public Guid StudyMonitorId { get; set; }
public int FailedFileCount { get; set; }
public string RecordPath { get; set; } = string.Empty;
public AddOrUpdateStudyDto Study { get; set; }
}
}
public class AddOrUpdateStudyDto
{
public string StudyId { get; set; } = string.Empty;
//public int Code { get; set; } = 0;
//public string StudyCode { get; set; } = string.Empty;
@ -271,7 +288,7 @@ namespace IRaCIS.Core.Application.Contracts
public string AcquisitionNumber { get; set; } = string.Empty;
public string TriggerTime { get; set; } = string.Empty;
public string ImageResizePath { get; set; }=string.Empty;
public string ImageResizePath { get; set; } = string.Empty;
public List<AddInstanceDto> InstanceList { get; set; }
public Guid? VisitTaskId { get; set; }

View File

@ -1,8 +1,16 @@
using FellowOakDicom;
using EasyCaching.Core;
using FellowOakDicom;
using IRaCIS.Core.Application.Contracts;
using IRaCIS.Core.Application.Filter;
using IRaCIS.Core.Application.Helper;
using IRaCIS.Core.Application.Service.ImageAndDoc.DTO;
using IRaCIS.Core.Domain.Share;
using IRaCIS.Core.Infrastructure;
using MassTransit;
using MathNet.Numerics;
using Medallion.Threading;
using Microsoft.AspNetCore.Mvc;
using OfficeOpenXml.FormulaParsing.Utilities;
using System;
using System.Collections.Generic;
using System.IO.Compression;
@ -19,17 +27,23 @@ namespace IRaCIS.Core.Application.Service.ImageAndDoc
[ApiExplorerSettings(GroupName = "Trial")]
public class DownloadAndUploadService : BaseService, IDownloadAndUploadService
{
private readonly IEasyCachingProvider _provider;
private readonly IRepository<SystemAnonymization> _systemAnonymizationRepository;
private readonly IRepository<SubjectVisit> _subjectVisitRepository;
private readonly IOSSService _oSSService;
public DownloadAndUploadService(IRepository<SystemAnonymization> systemAnonymizationRepository, IRepository<SubjectVisit> subjectVisitRepository, IOSSService oSSService)
private readonly IRepository<StudyMonitor> _studyMonitorRepository;
private readonly IDistributedLockProvider _distributedLockProvider;
public DownloadAndUploadService(IEasyCachingProvider provider, IRepository<SystemAnonymization> systemAnonymizationRepository, IRepository<SubjectVisit> subjectVisitRepository, IOSSService oSSService,
IRepository<StudyMonitor> studyMonitorRepository, IDistributedLockProvider distributedLockProvider)
{
_systemAnonymizationRepository = systemAnonymizationRepository;
_subjectVisitRepository = subjectVisitRepository;
_oSSService = oSSService;
_studyMonitorRepository = studyMonitorRepository;
_distributedLockProvider = distributedLockProvider;
_provider = provider;
}
/// <summary>
@ -39,7 +53,7 @@ namespace IRaCIS.Core.Application.Service.ImageAndDoc
/// <returns></returns>
public async Task<IResponseOutput<List<SubjectImageUploadDTO>>> GetSubjectImageUploadList(Guid subjectId)
{
var query = _repository.Where<VisitTask>(t => t.SubjectId == subjectId && t.SourceSubjectVisitId != null && t.DoctorUserId==_userInfo.Id)
var query = _repository.Where<VisitTask>(t => t.SubjectId == subjectId && t.SourceSubjectVisitId != null && t.DoctorUserId == _userInfo.Id)
.Select(u => new SubjectImageUploadDTO()
{
SubejctId = u.SubjectId,
@ -53,13 +67,13 @@ namespace IRaCIS.Core.Application.Service.ImageAndDoc
OrginalStudyList = u.SourceSubjectVisit.StudyList.Select(t => new StudyBasicInfo()
{
Id = t.Id,
StudyInstanceUid= t.StudyInstanceUid,
ModalityForEdit=t.ModalityForEdit,
BodyPartExamined=t.BodyPartExamined,
StudyInstanceUid = t.StudyInstanceUid,
ModalityForEdit = t.ModalityForEdit,
BodyPartExamined = t.BodyPartExamined,
BodyPartForEdit = t.BodyPartForEdit,
StudyCode=t.StudyCode,
StudyTime=t.StudyTime,
StudyCode = t.StudyCode,
StudyTime = t.StudyTime,
Description = t.Description,
InstanceCount = t.InstanceCount,
Modalities = t.Modalities,
@ -89,6 +103,274 @@ namespace IRaCIS.Core.Application.Service.ImageAndDoc
return ResponseOutput.Ok(list);
}
private void SpecialArchiveStudyDeal(TaskStudy study)
{
#region 特殊逻辑
if (study.PatientBirthDate.Length == 8)
{
study.PatientBirthDate = $"{study.PatientBirthDate[0]}{study.PatientBirthDate[1]}{study.PatientBirthDate[2]}{study.PatientBirthDate[3]}-{study.PatientBirthDate[4]}{study.PatientBirthDate[5]}-{study.PatientBirthDate[6]}{study.PatientBirthDate[7]}";
}
var dicModalityList = _repository.Where<Dictionary>(t => t.Code == "Modality").SelectMany(t => t.ChildList.Select(c => c.Value)).ToList();
var modality = study.Modalities;
var modalityForEdit = dicModalityList.Contains(modality) ? modality : String.Empty;
if (modality == "MR")
{
modalityForEdit = "MRI";
}
if (modality == "PT")
{
modalityForEdit = "PET";
}
if (modality == "PT、CT")
{
modalityForEdit = "PET-CT";
}
study.ModalityForEdit = modalityForEdit;
#endregion
}
[TypeFilter(typeof(TrialResourceFilter), Arguments = new object[] { "AfterStopCannNotOpt" })]
public async Task<IResponseOutput> AddOrUpdateArchiveTaskStudy(TaskArchiveStudyCommand incommand)
{
#region 获取该subject 已生成任务的访视的检查
var queryStudy = _repository.Where<VisitTask>(t => t.SubjectId == incommand.SubjectId && t.SourceSubjectVisitId != null && t.DoctorUserId == _userInfo.Id).Select(u => new
{
VisitTaskId = u.Id,
SourceSubjectVisitId = u.SourceSubjectVisitId,
OrginalStudyList = u.SourceSubjectVisit.StudyList.Select(t => new StudyBasicInfo()
{
Id = t.Id,
StudyInstanceUid = t.StudyInstanceUid
}).ToList(),
});
var studyList = await queryStudy.ToListAsync();
var findOriginStudy = studyList.FirstOrDefault(c => c.OrginalStudyList.Any(t => t.StudyInstanceUid == incommand.Study.StudyInstanceUid));
if (findOriginStudy==null)
{
return ResponseOutput.NotOk("该检查不属于该受试者,请核查");
}
#endregion
var modalitys = string.Empty;
try
{
var trialId = incommand.TrialId;
var studyMonitor = await _studyMonitorRepository.FirstOrDefaultAsync(t => t.Id == incommand.StudyMonitorId);
studyMonitor.UploadFinishedTime = DateTime.Now;
studyMonitor.ArchiveFinishedTime = DateTime.Now;
studyMonitor.FailedFileCount = incommand.FailedFileCount;
studyMonitor.IsSuccess = incommand.FailedFileCount == 0;
studyMonitor.RecordPath = incommand.RecordPath;
//上传
if (studyMonitor.IsDicomReUpload == false)
{
var study = _mapper.Map<TaskStudy>(incommand.Study);
var @lock = _distributedLockProvider.CreateLock($"StudyCode");
using (await @lock.AcquireAsync())
{
//查询数据库获取最大的Code 没有记录则为0
var dbStudyCodeIntMax = _repository.Where<TaskStudy>(s => s.TrialId == trialId).Select(t => t.Code).DefaultIfEmpty().Max();
//获取缓存中的值 并发的时候,需要记录,已被占用的值 这样其他线程在此占用的最大的值上递增
var cacheMaxCodeInt = _provider.Get<int>($"{trialId}_{StaticData.CacheKey.StudyMaxCode}").Value;
int currentNextCodeInt = cacheMaxCodeInt > dbStudyCodeIntMax ? cacheMaxCodeInt + 1 : dbStudyCodeIntMax + 1;
study.Code = currentNextCodeInt;
study.StudyCode = AppSettings.GetCodeStr(currentNextCodeInt, nameof(DicomStudy));
_provider.Set<int>($"{trialId}_{StaticData.CacheKey.StudyMaxCode}", study.Code, TimeSpan.FromMinutes(30));
}
study.Id = IdentifierHelper.CreateGuid(incommand.Study.StudyInstanceUid, incommand.TrialId.ToString(),findOriginStudy.VisitTaskId.ToString());
study.TrialId = incommand.TrialId;
//study.SiteId = incommand.SiteId;
study.SubjectId = incommand.SubjectId;
study.VisitTaskId = findOriginStudy.VisitTaskId;
//study.SubjectVisitId = incommand.SubjectVisitId;
//特殊处理逻辑
study.Modalities = string.Join("、", incommand.Study.SeriesList.Select(t => t.Modality).Distinct());
SpecialArchiveStudyDeal(study);
modalitys = study.Modalities;
await _repository.AddAsync(study);
studyMonitor.StudyId = study.Id;
studyMonitor.StudyCode = study.StudyCode;
foreach (var seriesItem in incommand.Study.SeriesList)
{
var series = _mapper.Map<TaskSeries>(seriesItem);
series.Id = IdentifierHelper.CreateGuid(seriesItem.StudyInstanceUid, seriesItem.SeriesInstanceUid, incommand.TrialId.ToString(), findOriginStudy.VisitTaskId.ToString());
series.StudyId = study.Id;
series.TrialId = incommand.TrialId;
//series.SiteId = incommand.SiteId;
series.SubjectId = incommand.SubjectId;
//series.SubjectVisitId = incommand.SubjectVisitId;
series.VisitTaskId = findOriginStudy.VisitTaskId;
//前端传递的数量不准,上传的时候,把失败的也加进来了,以实际数组的数字为准
series.InstanceCount = seriesItem.InstanceList.Count;
await _repository.AddAsync(series);
foreach (var instanceItem in seriesItem.InstanceList)
{
var isntance = _mapper.Map<TaskInstance>(instanceItem);
Guid instanceId = IdentifierHelper.CreateGuid(study.StudyInstanceUid, series.SeriesInstanceUid, isntance.SopInstanceUid, study.TrialId.ToString(), findOriginStudy.VisitTaskId.ToString());
isntance.Id = instanceId;
isntance.StudyId = study.Id;
isntance.SeriesId = series.Id;
isntance.TrialId = incommand.TrialId;
//isntance.SiteId = incommand.SiteId;
isntance.SubjectId = incommand.SubjectId;
//isntance.SubjectVisitId = incommand.SubjectVisitId;
isntance.VisitTaskId = findOriginStudy.VisitTaskId;
await _repository.AddAsync(isntance);
}
}
}
else
{
var studyId = IdentifierHelper.CreateGuid(incommand.Study.StudyInstanceUid, incommand.TrialId.ToString()); ;
var study = await _repository.Where<TaskStudy>().FirstOrDefaultAsync(t => t.Id == studyId);
//重传的时候也要赋值检查Id
studyMonitor.StudyId = study.Id;
studyMonitor.StudyCode = study.StudyCode;
//特殊处理逻辑
study.Modalities = string.Join("、", incommand.Study.SeriesList.Select(t => t.Modality).Union(study.Modalities.Split("、", StringSplitOptions.RemoveEmptyEntries)).Distinct());
SpecialArchiveStudyDeal(study);
modalitys = study.Modalities;
// 少了整个序列
//某个序列下少了instance
foreach (var seriesItem in incommand.Study.SeriesList)
{
var seriesId = IdentifierHelper.CreateGuid(seriesItem.StudyInstanceUid, seriesItem.SeriesInstanceUid, trialId.ToString(), findOriginStudy.VisitTaskId.ToString());
TaskSeries dicomSeries = await _repository.FirstOrDefaultAsync<TaskSeries>(t => t.Id == seriesId);
//判断重复
if (dicomSeries == null)
{
var series = _mapper.Map<TaskSeries>(seriesItem);
series.Id = seriesId;
series.StudyId = study.Id;
series.TrialId = incommand.TrialId;
//series.SiteId = incommand.SiteId;
series.SubjectId = incommand.SubjectId;
//series.SubjectVisitId = incommand.SubjectVisitId;
dicomSeries = await _repository.AddAsync(series);
//新的序列 那么 检查的序列数量+1
study.SeriesCount += 1;
}
else
{
//该序列掉了instance
dicomSeries.InstanceCount += seriesItem.InstanceList.Count;
}
foreach (var instanceItem in seriesItem.InstanceList)
{
var insntance = _mapper.Map<TaskInstance>(instanceItem);
insntance.Id = IdentifierHelper.CreateGuid(insntance.StudyInstanceUid, insntance.SeriesInstanceUid, insntance.SopInstanceUid, trialId.ToString(), findOriginStudy.VisitTaskId.ToString());
insntance.StudyId = study.Id;
insntance.SeriesId = dicomSeries.Id;
insntance.TrialId = incommand.TrialId;
//insntance.SiteId = incommand.SiteId;
insntance.SubjectId = incommand.SubjectId;
insntance.VisitTaskId = findOriginStudy.VisitTaskId;
await _repository.AddAsync(insntance);
}
// 不管是新的序列 还是 该序列 掉了Instance 重传的时候 检查的instance 数量都会增加
study.InstanceCount += seriesItem.InstanceList.Count;
}
}
var @lock2 = _distributedLockProvider.CreateLock($"StudyCommit");
using (await @lock2.AcquireAsync())
{
await _repository.SaveChangesAsync();
}
}
catch (Exception ex)
{
return ResponseOutput.NotOk(ex.Message);
}
finally
{
_provider.Remove($"StudyUid_{incommand.TrialId}_{incommand.Study.StudyInstanceUid}");
}
return ResponseOutput.Ok(modalitys);
}
/// <summary>
/// 打包和匿名化影像 默认是匿名化打包,也可以不匿名化打包
/// </summary>

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@ -15,6 +15,9 @@ using Microsoft.AspNetCore.Http;
using Newtonsoft.Json;
using System.Threading;
using Medallion.Threading;
using System.Reactive.Subjects;
using DocumentFormat.OpenXml.Drawing.Diagrams;
using IRaCIS.Core.Application.Service.ImageAndDoc.DTO;
namespace IRaCIS.Core.Application.Service.ImageAndDoc
{
@ -710,6 +713,124 @@ namespace IRaCIS.Core.Application.Service.ImageAndDoc
[HttpPost]
public async Task<IResponseOutput<List<VerifyStudyUploadResult>>> VerifyTaskStudyAllowUploadAsync(VerifyTaskUploadOrReupload verifyInfo)
{
var queryStudy = _repository.Where<VisitTask>(t => t.SubjectId == verifyInfo.SubjectId && t.SourceSubjectVisitId != null && t.DoctorUserId == _userInfo.Id).Select(u => new
{
VisitTaskId = u.Id,
SourceSubjectVisitId = u.SourceSubjectVisitId,
OrginalStudyList = u.SourceSubjectVisit.StudyList.Select(t => new StudyBasicInfo()
{
Id = t.Id,
StudyInstanceUid = t.StudyInstanceUid
}).ToList(),
UploadStudyList = u.TaskStudyList.Select(t => new
{
Id = t.Id,
StudyInstanceUid = t.StudyInstanceUid,
SeriesList=t.SeriesList.Select(t => new UploadedSeries()
{ SeriesId = t.Id, SeriesInstanceUid = t.SeriesInstanceUid, SOPInstanceUIDList = t.InstanceList.Select(c => c.SopInstanceUid).ToList() }).ToList()
}).ToList()
});
var studyList = await queryStudy.ToListAsync();
var resultList = new List<VerifyStudyUploadResult>();
var trialId = verifyInfo.TrialId;
var subjectId = verifyInfo.SubjectId;
var visitList = _repository.Where<SubjectVisit>(t => t.SubjectId == verifyInfo.SubjectId).Select(t => new { t.VisitNum, t.EarliestScanDate, t.LatestScanDate, t.Id }).ToList();
foreach (var waitUploadItem in verifyInfo.StudyInstanceUidList)
{
var studyInstanceUid = waitUploadItem.StudyInstanceUid;
var result = new VerifyStudyUploadResult();
if (_provider.Exists($"StudyUid_{trialId}_{studyInstanceUid}") && _provider.Get<Guid>($"StudyUid_{trialId}_{studyInstanceUid}").Value != _userInfo.Id)
{
result.AllowUpload = false;
result.AllowReUpload = false;
result.StudyInstanceUid = studyInstanceUid;
//---当前有人正在上传归档该检查!
result.ErrorMesseage = _localizer["Study_UploadArchiving"];
resultList.Add(result);
continue;
}
var findOriginStudy = studyList.FirstOrDefault(c => c.OrginalStudyList.Any(t => t.StudyInstanceUid == studyInstanceUid));
if (findOriginStudy == null)
{
throw new BusinessValidationFailedException("该检查不属于该受试者,请核查") ;
}
else
{
if(findOriginStudy.UploadStudyList.Any(t=>t.StudyInstanceUid == studyInstanceUid))
{
result.AllowReUpload = true;
result.AllowUpload = false;
result.UploadedSeriesList = findOriginStudy.UploadStudyList.Where(t => t.StudyInstanceUid == studyInstanceUid).SelectMany(t => t.SeriesList).ToList();
}
else
{
result.AllowUpload = true;
result.AllowReUpload = false;
}
}
result.StudyInstanceUid = studyInstanceUid;
var @lock = _distributedLockProvider.CreateLock($"StudyUpload");
using (@lock.Acquire())
{
if (result.AllowReUpload || result.AllowUpload)
{
_provider.Set($"StudyUid_{trialId}_{studyInstanceUid}", _userInfo.Id, TimeSpan.FromSeconds(30));
}
else
{
_provider.Remove($"StudyUid_{trialId}_{studyInstanceUid}");
}
}
resultList.Add(result);
}
var systemAnonymizationList = _repository.Where<SystemAnonymization>(t => t.IsEnable).ToList();
return ResponseOutput.Ok<List<VerifyStudyUploadResult>>(resultList, new
{
AnonymizeFixedList = systemAnonymizationList.Where(t => t.IsFixed).ToList(),
AnonymizeNotFixedList = systemAnonymizationList.Where(t => t.IsFixed == false).ToList()
});
}
/// <summary>
/// 批量验证 检查是否可以上传 并告知原因
/// </summary>
@ -789,7 +910,7 @@ namespace IRaCIS.Core.Application.Service.ImageAndDoc
return result;
}
if (_repository.Where<Subject>(t => t.Id == SubjectId).Select(t => t.Status).FirstOrDefault() == SubjectStatus.EndOfVisit)
if (_repository.Where<Domain.Models.Subject>(t => t.Id == SubjectId).Select(t => t.Status).FirstOrDefault() == SubjectStatus.EndOfVisit)
{
result.AllowUpload = false;

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@ -394,6 +394,17 @@ namespace IRaCIS.Core.Application.Contracts
}
public class VerifyTaskUploadOrReupload
{
[NotDefault]
public Guid TrialId { get; set; }
[NotDefault]
public Guid SubjectId { get; set; }
public List<VerifyUploadStudyBasicInfo> StudyInstanceUidList { get; set; } = new List<VerifyUploadStudyBasicInfo>();
}
public class VerifyUploadOrReupload
{
[NotDefault]