修改HIR 匿名化逻辑
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c290515e22
commit
972b18e4df
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@ -203,6 +203,7 @@ app.MapControllers();
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Log.Logger = new LoggerConfiguration()
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//.MinimumLevel.Information()
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.MinimumLevel.Override("Microsoft", LogEventLevel.Warning)
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.MinimumLevel.Override("ZiggyCreatures.Caching.Fusion", LogEventLevel.Warning)
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.WriteTo.Console()
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.WriteTo.File($"{AppContext.BaseDirectory}Serilogs/.log", rollingInterval: RollingInterval.Day)
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.CreateLogger();
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@ -30,6 +30,7 @@ using System.Linq;
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using System.Text;
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using System.Threading;
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using System.Threading.Tasks;
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using ZiggyCreatures.Caching.Fusion;
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namespace IRaCIS.Core.SCP.Service
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{
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@ -449,7 +450,8 @@ namespace IRaCIS.Core.SCP.Service
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var dicomArchiveService = _serviceProvider.GetService<IDicomArchiveService>();
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var _seriesRepository = _serviceProvider.GetService<IRepository<SCPSeries>>();
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var _studyGroupRepository = _serviceProvider.GetService<IRepository<SCPStudyHospitalGroup>>();
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var _fusionCache = _serviceProvider.GetService<IFusionCache>();
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var _systemAnonymizationRepository = _serviceProvider.GetService<IRepository<SystemAnonymization>>();
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var _distributedLockProvider = _serviceProvider.GetService<IDistributedLockProvider>();
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@ -462,21 +464,77 @@ namespace IRaCIS.Core.SCP.Service
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try
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{
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// 直接拿 Dataset(已经完整)
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var dataset = request.Dataset;
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using (MemoryStream ms = new MemoryStream())
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#region 匿名化
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var anonymizeList = await _fusionCache.GetOrSetAsync(CacheKeys.SystemAnonymization, _ => CacheHelper.GetSystemAnonymizationListAsync(_systemAnonymizationRepository), TimeSpan.FromDays(7));
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var fixedFiledList = anonymizeList.Where(t => t.IsFixed).ToList();
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var ircFiledList = anonymizeList.Where(t => t.IsFixed == false).ToList();
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foreach (var item in fixedFiledList)
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{
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await request.File.SaveAsync(ms);
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var dicomTag = new DicomTag(Convert.ToUInt16(item.Group, 16), Convert.ToUInt16(item.Element, 16));
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dataset.AddOrUpdate(dicomTag, item.ReplaceValue);
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}
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foreach (var item in ircFiledList)
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{
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var dicomTag = new DicomTag(Convert.ToUInt16(item.Group, 16), Convert.ToUInt16(item.Element, 16));
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if (dicomTag == DicomTag.ClinicalTrialProtocolID)
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{
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dataset.AddOrUpdate(DicomTag.ClinicalTrialProtocolID, "");
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}
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if (dicomTag == DicomTag.ClinicalTrialSiteID)
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{
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dataset.AddOrUpdate(DicomTag.ClinicalTrialSiteID, "");
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}
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if (dicomTag == DicomTag.ClinicalTrialSubjectID)
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{
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dataset.AddOrUpdate(DicomTag.ClinicalTrialSubjectID, "");
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}
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if (dicomTag == DicomTag.ClinicalTrialTimePointID)
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{
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dataset.AddOrUpdate(DicomTag.ClinicalTrialTimePointID, "");
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}
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//if (dicomTag == DicomTag.PatientID)
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//{
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// var pid = dataset.GetSingleValueOrDefault(DicomTag.PatientID, string.Empty);
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// dataset.AddOrUpdate(DicomTag.PatientID, trialSiteInfo.TrialCode + "_" + pid);
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//}
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}
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#endregion
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// 构造 DicomFile(不用 Open)
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var dicomFile = new DicomFile(dataset);
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#region 1帧拆成多个固定大小的,方便移动端浏览
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// 回到开头,读取 dicom
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ms.Position = 0;
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var dicomFile = DicomFile.Open(ms);
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var numberOfFrames = dicomFile.Dataset.GetSingleValueOrDefault(DicomTag.NumberOfFrames, 1);
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//多帧处理逻辑
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if(numberOfFrames > 1)
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if (numberOfFrames > 1)
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{
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//一定要有像素数据才处理
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var pixelData = DicomPixelData.Create(dicomFile.Dataset);
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@ -615,10 +673,6 @@ namespace IRaCIS.Core.SCP.Service
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dicomFile.Dataset.AddOrUpdate(newFragments);
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// 重新保存 dicom 到流
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ms.SetLength(0);
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dicomFile.Save(ms);
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}
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//传递过来的就是拆分的,但是是没有偏移表的,我需要自己创建偏移表,不然生成缩略图失败
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else if (syntax.IsEncapsulated && fragmentCount > pixelData.NumberOfFrames && originOffsetTable.Count == 0)
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@ -672,10 +726,7 @@ namespace IRaCIS.Core.SCP.Service
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frag.OffsetTable.AddRange(bot.ToArray());
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// 重新保存 DICOM 到流
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ms.SetLength(0);
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dicomFile.Save(ms);
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}
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@ -685,22 +736,15 @@ namespace IRaCIS.Core.SCP.Service
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Log.Logger.Warning($"CallingAE:{Association.CallingAE} CalledAE:{Association.CalledAE} 处理多帧失败,上传原始文件:{mutiEx.ToString()}");
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}
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}
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}
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#endregion
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#region 本地测试
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//// --- 保存到本地文件测试 ---
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//var localPath = @"D:\TestDicom-5.dcm";
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//var localPath = @"D:\TestDicom.dcm";
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//using (var fs = new FileStream(localPath, FileMode.Create, FileAccess.Write))
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//{
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// ms.CopyTo(fs);
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@ -709,7 +753,11 @@ namespace IRaCIS.Core.SCP.Service
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#endregion
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// 直接写入内存
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await using var ms = new MemoryStream();
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await dicomFile.SaveAsync(ms);
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ms.Position = 0;
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//irc 从路径最后一截取Guid
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storeRelativePath = await ossService.UploadToOSSAsync(ms, ossFolderPath, instanceId.ToString(), false);
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@ -828,7 +876,7 @@ namespace IRaCIS.Core.SCP.Service
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_upload.FileCount++;
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_upload.FileSize = _upload.FileSize + fileSize;
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}
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}
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Log.Logger.Information($"CallingAE:{Association.CallingAE} CalledAE:{Association.CalledAE} {request.SOPInstanceUID} 上传完成 ");
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@ -20,11 +20,7 @@ namespace IRaCIS.Core.SCP.Service
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public class DicomArchiveService(IRepository<SCPPatient> _patientRepository,
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IRepository<SCPStudy> _studyRepository,
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IRepository<SCPSeries> _seriesRepository,
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IRepository<SCPInstance> _instanceRepository,
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IDistributedLockProvider _distributedLockProvider,
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IRepository<SystemAnonymization> _systemAnonymizationRepository,
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IRepository<TrialSite> _trialSiteRepository,
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IFusionCache _fusionCache
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IRepository<SCPInstance> _instanceRepository
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) : BaseService, IDicomArchiveService
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{
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@ -42,55 +38,6 @@ namespace IRaCIS.Core.SCP.Service
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{
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var dataset = dicomFile.Dataset;
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#region 匿名化
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var anonymizeList = await _fusionCache.GetOrSetAsync(CacheKeys.SystemAnonymization, _ => CacheHelper.GetSystemAnonymizationListAsync(_systemAnonymizationRepository), TimeSpan.FromDays(7));
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var fixedFiledList = anonymizeList.Where(t => t.IsFixed).ToList();
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var ircFiledList = anonymizeList.Where(t => t.IsFixed == false).ToList();
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foreach (var item in fixedFiledList)
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{
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var dicomTag = new DicomTag(Convert.ToUInt16(item.Group, 16), Convert.ToUInt16(item.Element, 16));
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dataset.AddOrUpdate(dicomTag, item.ReplaceValue);
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}
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foreach (var item in ircFiledList)
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{
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var dicomTag = new DicomTag(Convert.ToUInt16(item.Group, 16), Convert.ToUInt16(item.Element, 16));
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if (dicomTag == DicomTag.ClinicalTrialProtocolID)
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{
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dataset.AddOrUpdate(dicomTag, "");
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}
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if (dicomTag == DicomTag.ClinicalTrialSiteID)
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{
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dataset.AddOrUpdate(dicomTag, "");
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}
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if (dicomTag == DicomTag.ClinicalTrialSubjectID)
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{
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dataset.AddOrUpdate(dicomTag, "");
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}
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if (dicomTag == DicomTag.ClinicalTrialTimePointID)
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{
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dataset.AddOrUpdate(dicomTag, "");
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}
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}
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#endregion
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string studyInstanceUid = dataset.GetString(DicomTag.StudyInstanceUID);
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string seriesInstanceUid = dataset.GetString(DicomTag.SeriesInstanceUID);
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string sopInstanceUid = dataset.GetString(DicomTag.SOPInstanceUID);
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@ -257,6 +204,7 @@ namespace IRaCIS.Core.SCP.Service
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findStudy.DicomStudyTime = dataset.GetSingleValueOrDefault(DicomTag.StudyTime, string.Empty);
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findStudy.CalledAE = calledAE;
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findStudy.CallingAE = callingAE;
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findStudy.PatientIdStr = patientIdStr;
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findStudy.PatientName = dataset.GetSingleValueOrDefault(DicomTag.PatientName, string.Empty);
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findStudy.PatientSex = dataset.GetSingleValueOrDefault(DicomTag.PatientSex, string.Empty);
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findStudy.PatientAge = dataset.GetSingleValueOrDefault(DicomTag.PatientAge, string.Empty);
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