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Merge branch 'master' of http://192.168.1.2:8033/IRaCIS_Core_Api

Uat_Study
he 2023-05-04 13:51:37 +08:00
parent bb6744dc6f 7ce98a8c81
commit f9c61cabcc
7 changed files with 88 additions and 97 deletions
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75
IRaCIS.Core.API/Program.cs
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@ -52,29 +52,27 @@ namespace IRaCIS.Core.API
.Build();
//// Serilog
SerilogExtension.AddSerilogSetup(enviromentName, host.Services);
Log.Logger.Warning($"µ±Ç°»·¾³£º{enviromentName}");
NewId.SetProcessIdProvider(new CurrentProcessIdProvider());
//// Serilog
SerilogExtension.AddSerilogSetup(enviromentName, host.Services);
//缓存项目的状态 匿名化数据
await InitCache(host);
WatchJsonFile(Path.Combine(AppContext.BaseDirectory, StaticData.Folder.Resources, "en-US.json") );
WatchJsonFile(Path.Combine(AppContext.BaseDirectory, StaticData.Folder.Resources, StaticData.En_US_Json) );
WatchJsonFile(Path.Combine(AppContext.BaseDirectory, StaticData.Folder.Resources, "zh-CN.json"));
WatchJsonFile(Path.Combine(AppContext.BaseDirectory, StaticData.Folder.Resources, StaticData.Zh_CN_Json));
host.Run();
Log.Logger.Warning($"当前环境：{enviromentName}");
}
catch (Exception e)
@ -83,46 +81,6 @@ namespace IRaCIS.Core.API
Log.Logger.Error(e.InnerException is null ? e.Message + e.StackTrace : e.InnerException?.Message + e.InnerException?.StackTrace);
}
#region Nlog 废弃
//var logger = NLog.Web.NLogBuilder.ConfigureNLog("NLog.config").GetCurrentClassLogger();
//try
//{
// var ihostBuilder = CreateHostBuilder(args);
// ihostBuilder.UseEnvironment(environment);
// ihostBuilder.ConfigureAppConfiguration((hostContext, config) =>
// {
// //Console.WriteLine(hostContext.HostingEnvironment.EnvironmentName);
// config.AddJsonFile("appsettings.json", false, true)
// .AddJsonFile($"appsettings.{environment}.json", false, true);
// });
// var host = ihostBuilder.Build();
// CacheTrialStatus(host);
// host.Run();
//}
//catch (Exception exception)
//{
// //NLog: catch setup errors
// logger.Error(exception, "Stopped program because of exception");
//}
//finally
//{
// // Ensure to flush and stop internal timers/threads before application-exit (Avoid segmentation fault on Linux)
// NLog.LogManager.Shutdown();
//}
#endregion
}
public static IHostBuilder CreateHostBuilder(string[] args) =>
@ -141,17 +99,8 @@ namespace IRaCIS.Core.API
//webBuilder.UseSerilog();//在宿主机启动的时候配置serilog,与微软ILogger进行整合
webBuilder.UseStartup<Startup>();
}).UseSerilog()
.UseServiceProviderFactory(new AutofacServiceProviderFactory());//使用Autofac替代本身容器
//ConfigureLogging(logging =>
//{
// logging.ClearProviders();
// logging.SetMinimumLevel(Microsoft.Extensions.Logging.LogLevel.Trace);
//})
//.UseNLog()
// NLog: Setup NLog for Dependency injection;
.UseServiceProviderFactory(new AutofacServiceProviderFactory());
private static async Task InitCache(IHost host)
{
@ -176,7 +125,7 @@ namespace IRaCIS.Core.API
foreach (IConfigurationSection section in enConfiguration.GetChildren())
{
if (filePath.Contains("en-US.json") )
if (filePath.Contains(StaticData.En_US_Json) )
{
StaticData.En_US_Dic[section.Key] = section.Value;
@ -195,11 +144,13 @@ namespace IRaCIS.Core.API
}
public static void WatchJsonFile(string filePath)
{
LoadJsonFile(filePath);
FileSystemWatcher watcher = new FileSystemWatcher(Path.GetDirectoryName(filePath), Path.GetFileName(filePath));
watcher.Changed += (sender, e) => LoadJsonFile(filePath);
watcher.EnableRaisingEvents = true;
LoadJsonFile(filePath);
}
}

8
IRaCIS.Core.API/_ServiceExtensions/Serilog/SerilogSetup.cs
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@ -36,10 +36,10 @@ namespace IRaCIS.Core.API
config.WriteTo.Email(new EmailConnectionInfo()
{
EmailSubject = "系统警告,请速速查看!",//邮件标题
FromEmail = "iracis_grr@163.com",//发件人邮箱
MailServer = "smtp.163.com",//smtp服务器地址
NetworkCredentials = new NetworkCredential("iracis_grr@163.com", "XLWVQKZAEKLDWOAH"),//两个参数分别是发件人邮箱与客户端授权码
Port = 25,//端口号
FromEmail = "test@extimaging.com",//发件人邮箱
MailServer = "smtp.qiye.aliyun.com",//smtp服务器地址
NetworkCredentials = new NetworkCredential("test@extimaging.com", "SHzyyl2021"),//两个参数分别是发件人邮箱与客户端授权码
Port = 465,//端口号
ToEmail = "872297557@qq.com"//收件人
}, restrictedToMinimumLevel: LogEventLevel.Error,
outputTemplate: "{Timestamp:yyyy-MM-dd HH:mm:ss.fff} [ {Level} {ClientIp} {ClientAgent} {TokenUserRealName} {TokenUserType} ] || [path: {RequestPath} arguments: {RequestBody}] {SourceContext:l} || {Message} || {Exception} ||end {NewLine})");

13
IRaCIS.Core.Application/Service/ImageAndDoc/DTO/UnionStudyViewDodel.cs
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@ -210,12 +210,9 @@ namespace IRaCIS.Core.Application.Contracts
public bool IsAdd { get; set; }
public AddOrUpdateStudyDto Study { get; set; }
public List<AddOrUpdateSeriesDto> SeriesList { get; set; }
public List<AddInstanceDto> InstanceList { get; set; }
}
}
public class AddOrUpdateStudyDto
{
@ -253,6 +250,9 @@ namespace IRaCIS.Core.Application.Contracts
public string BodyPartExamined { get; set; } = string.Empty;
public List<AddOrUpdateSeriesDto> SeriesList { get; set; }
}
public class AddOrUpdateSeriesDto
@ -278,6 +278,9 @@ namespace IRaCIS.Core.Application.Contracts
public string AcquisitionNumber { get; set; } = string.Empty;
public string TriggerTime { get; set; } = string.Empty;
public List<AddInstanceDto> InstanceList { get; set; }
}

73
IRaCIS.Core.Application/Service/ImageAndDoc/StudyService.cs
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@ -168,7 +168,7 @@ namespace IRaCIS.Core.Application.Service.ImageAndDoc
await _dicomstudyRepository.AddAsync(study);
foreach (var seriesItem in incommand.SeriesList)
foreach (var seriesItem in incommand.Study.SeriesList)
{
var series = _mapper.Map<DicomSeries>(seriesItem);
@ -182,7 +182,7 @@ namespace IRaCIS.Core.Application.Service.ImageAndDoc
await _dicomSeriesRepository.AddAsync(series);
foreach (var instanceItem in incommand.InstanceList)
foreach (var instanceItem in seriesItem.InstanceList)
{
var isntance = _mapper.Map<DicomInstance>(instanceItem);
isntance.StudyId = study.Id;
@ -209,34 +209,59 @@ namespace IRaCIS.Core.Application.Service.ImageAndDoc
var study = await _dicomstudyRepository.FirstOrDefaultAsync(t => t.Id == studyId);
_mapper.Map(incommand.Study, study);
//_mapper.Map(incommand.Study, study);
//特殊处理逻辑
SpecialArchiveStudyDeal(study);
await _dicomSeriesRepository.BatchDeleteNoTrackingAsync(t => t.StudyId == incommand.Study.Id);
//await _dicomSeriesRepository.BatchDeleteNoTrackingAsync(t => t.StudyId == incommand.Study.Id);
foreach (var seriesItem in incommand.SeriesList)
// 少了整个序列
//某个序列下少了instance
foreach (var seriesItem in incommand.Study.SeriesList)
{
var series = _mapper.Map<DicomSeries>(seriesItem);
var seriesId = IdentifierHelper.CreateGuid(seriesItem.StudyInstanceUid, seriesItem.SeriesInstanceUid, trialId.ToString());
series.Id = IdentifierHelper.CreateGuid(series.StudyInstanceUid, series.SeriesInstanceUid, trialId.ToString());
series.StudyId = study.Id;
DicomSeries dicomSeries = await _dicomSeriesRepository.FirstOrDefaultAsync(t=>t.Id==seriesId);
series.TrialId = incommand.TrialId;
series.SiteId = incommand.SiteId;
series.SubjectId = incommand.SubjectId;
series.SubjectVisitId = incommand.SubjectVisitId;
//判断重复
if (dicomSeries == null)
{
await _dicomSeriesRepository.AddAsync(series);
foreach (var instanceItem in incommand.InstanceList)
var series = _mapper.Map<DicomSeries>(seriesItem);
series.Id = seriesId;
series.StudyId = study.Id;
series.TrialId = incommand.TrialId;
series.SiteId = incommand.SiteId;
series.SubjectId = incommand.SubjectId;
series.SubjectVisitId = incommand.SubjectVisitId;
dicomSeries= await _dicomSeriesRepository.AddAsync(series);
//新的序列 那么 检查的序列数量+1
study.SeriesCount += 1;
}
else
{
//该序列掉了instance
dicomSeries.InstanceCount += seriesItem.InstanceCount;
}
foreach (var instanceItem in seriesItem.InstanceList)
{
var insntance = _mapper.Map<DicomInstance>(instanceItem);
insntance.Id = IdentifierHelper.CreateGuid(insntance.StudyInstanceUid, insntance.SeriesInstanceUid, insntance.SopInstanceUid, trialId.ToString());
insntance.StudyId = study.Id;
insntance.SeriesId = series.Id;
insntance.SeriesId = dicomSeries.Id;
insntance.TrialId = incommand.TrialId;
insntance.SiteId = incommand.SiteId;
@ -245,16 +270,17 @@ namespace IRaCIS.Core.Application.Service.ImageAndDoc
await _dicomInstanceRepository.AddAsync(insntance);
}
// 不管是新的序列 还是 该序列 掉了Instance 重传的时候 检查的instance 数量都会增加
study.InstanceCount += seriesItem.InstanceCount;
}
// 少了整个序列
//某个序列下少了instance
}
await _dicomstudyRepository.SaveChangesAsync();
return ResponseOutput.Ok();
@ -629,7 +655,7 @@ namespace IRaCIS.Core.Application.Service.ImageAndDoc
/// 批量验证 检查是否可以上传 并告知原因
/// </summary>
[HttpPost]
public (List<VerifyStudyUploadResult>, object?) VerifyStudyAllowUpload(VerifyUploadOrReupload verifyInfo)
public IResponseOutput<List<VerifyStudyUploadResult>> VerifyStudyAllowUpload(VerifyUploadOrReupload verifyInfo)
{
var trialInfo = _repository.Where<Trial>().FirstOrDefault(t => t.Id == verifyInfo.TrialId).IfNullThrowException();
@ -677,13 +703,12 @@ namespace IRaCIS.Core.Application.Service.ImageAndDoc
var systemAnonymizationList = _repository.Where<SystemAnonymization>(t => t.IsEnable).ToList();
return (result, new
return ResponseOutput.Ok<List<VerifyStudyUploadResult>>(result, new
{
DicomStoreInfo = otherData,
AnonymizeFixedList = systemAnonymizationList.Where(t => t.IsFixed).ToList(),
AnonymizeNotFixedList = systemAnonymizationList.Where(t => t.IsFixed == false).ToList()
}
);
});
}
@ -738,7 +763,7 @@ namespace IRaCIS.Core.Application.Service.ImageAndDoc
result.AllowReUpload = true;
result.UploadedSeriesList = _repository.Where<DicomSeries>(t => t.StudyId == verifyStudyInfo.Id).Select(t => new UploadedSeries()
{ SeriesInstanceUid = t.SeriesInstanceUid, SOPInstanceUIDList = t.DicomInstanceList.Select(c => c.SopInstanceUid).ToList() }).ToList();
{ SeriesId=t.Id, SeriesInstanceUid = t.SeriesInstanceUid, SOPInstanceUIDList = t.DicomInstanceList.Select(c => c.SopInstanceUid).ToList() }).ToList();
}
//不是同一个受试者
else

4
IRaCIS.Core.Application/Service/TrialSiteUser/_MapConfig.cs
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@ -162,7 +162,9 @@ namespace IRaCIS.Core.Application.Service
CreateMap<AssginSiteCRCCommand, TrialSiteUser>();
CreateMap<Domain.Models.Trial, TrialConfigDTO>().ForMember(t => t.TrialId, u => u.MapFrom(c => c.Id))
var isEn_Us = false;
CreateMap<Domain.Models.Trial, TrialConfigDTO>().ForMember(t => t.TrialId, u => u.MapFrom(c => c.Id))
.ForMember(t => t.TrialCriterionIds, u => u.MapFrom(c => c.ReadingQuestionCriterionTrialList.Where(v =>v.IsConfirm).OrderBy(x=>x.ShowOrder).Select(r => r.Id)))
.ForMember(t => t.TrialCriterionNames, u => u.MapFrom(c => c.ReadingQuestionCriterionTrialList.Where(v => v.IsConfirm).OrderBy(x => x.ShowOrder).Select(r => r.CriterionName)))
.ForMember(t => t.ClinicalDataTrialSetIds, u => u.MapFrom(c => c.clinicalDataTrialSets.Where(v => v.IsConfirm).Select(r => r.Id)))

2
IRaCIS.Core.Application/Service/Visit/DTO/VisitPointViewModel.cs
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@ -319,6 +319,8 @@ namespace IRaCIS.Core.Application.Contracts
public class UploadedSeries
{
public Guid SeriesId { get; set; }
public string SeriesInstanceUid { get; set; }
public List<string> SOPInstanceUIDList { get; set; }

10
IRaCIS.Core.Domain/_Config/_StaticData.cs
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@ -1,4 +1,6 @@
using System.Collections.Generic;
using System;
using System.Collections.Generic;
using System.IO;
namespace IRaCIS.Core.Domain.Share;
@ -10,6 +12,12 @@ public static class StaticData
public static Dictionary<string, string> Zh_CN_Dic = new Dictionary<string, string>();
public static readonly string En_US_Json = "en-US.json";
public static readonly string Zh_CN_Json = "zh-CN.json";
#region 字典表项固定值
public static readonly string Title = "Title";