using Microsoft.AspNetCore.Mvc;
using IRaCIS.Core.Application.Service.Reading.Dto;
using MassTransit;
namespace IRaCIS.Application.Services
{
///
/// 临床数据配置
///
[ApiExplorerSettings(GroupName = "Reading")]
public class ClinicalDataSetService : BaseService
{
public IRepository _subjectVisitRepository;
private readonly IRepository _clinicalDataTrialSetRepository;
private readonly IRepository _clinicalDataSystemSetRepository;
private readonly IRepository _previousPDFRepository;
private readonly IRepository _trialRepository;
private readonly IRepository _systemClinicalDataCriterionRepository;
private readonly IRepository _trialClinicalDataCriterionRepository;
public ClinicalDataSetService(IRepository subjectVisitRepository,
IRepository ClinicalDataTrialSetRepository,
IRepository ClinicalDataSystemSetRepository,
IRepository previousPDFRepository,
IRepository trialRepository,
IRepository systemClinicalDataCriterionRepository,
IRepository trialClinicalDataCriterionRepository
)
{
_systemClinicalDataCriterionRepository = systemClinicalDataCriterionRepository;
_trialClinicalDataCriterionRepository = trialClinicalDataCriterionRepository;
_subjectVisitRepository = subjectVisitRepository;
_clinicalDataTrialSetRepository = ClinicalDataTrialSetRepository;
_clinicalDataSystemSetRepository = ClinicalDataSystemSetRepository;
this._previousPDFRepository = previousPDFRepository;
this._trialRepository = trialRepository;
}
#region 系统
///
/// 新增或者修改(系统)
///
///
///
[HttpPost]
public async Task AddOrUpdateClinicalDataSystemSet(ClinicalDataSystemSetAddOrEdit indto)
{
var existsQuery = _clinicalDataSystemSetRepository
.WhereIf(indto.Id != null, x => x.Id != indto.Id)
.Where(x => x.ClinicalDataSetName == indto.ClinicalDataSetName);
if (await existsQuery.AnyAsync())
{
return ResponseOutput.NotOk("存在同类型的临床数据,操作失败");
}
indto.CriterionEnumListStr= $"|{String.Join('|', indto.CriterionEnumList)}|";
var entity = await _clinicalDataSystemSetRepository.InsertOrUpdateAsync(indto);
//entity.SystemClinicalDataCriterionList = indto.SystemCriterionIdList.Select(t => new SystemClinicalDataCriterion()
//{
// SystemClinicalDataSetId = entity.Id,
// SystemReadingCriterionId = t
//}).ToList();
//if (indto.Id != null)
//{
// await _systemClinicalDataCriterionRepository.BatchDeleteNoTrackingAsync(t => t.SystemClinicalDataSetId == entity.Id);
// await _systemClinicalDataCriterionRepository.AddRangeAsync(entity.SystemClinicalDataCriterionList);
//}
await _clinicalDataSystemSetRepository.SaveChangesAsync();
return ResponseOutput.Ok(entity.Id.ToString());
}
///
/// 获取系统临床数据(系统)
///
///
[HttpPost]
public async Task> GetSystemClinicalDataSystemSetList(GetTrialClinicalDataSystemIndto inDto)
{
return await _clinicalDataSystemSetRepository.AsQueryable()
.WhereIf(inDto.ClinicalDataLevel != null, x => x.ClinicalDataLevel == inDto.ClinicalDataLevel)
.WhereIf(inDto.ClinicalUploadType != null, x => x.ClinicalUploadType == inDto.ClinicalUploadType)
.WhereIf(inDto.ClinicalDataSetName != String.Empty, x => x.ClinicalDataSetName.Contains(inDto.ClinicalDataSetName))
.ProjectTo(_mapper.ConfigurationProvider).ToListAsync();
}
///
/// 删除(系统)
///
///
///
[HttpDelete("{id:guid}")]
public async Task DeleteClinicalSystemSetData(Guid id)
{
await _clinicalDataSystemSetRepository.DeleteFromQueryAsync(x => x.Id == id, true);
return ResponseOutput.Result(true);
}
#endregion
#region 项目
///
/// 新增或者修改(项目)
///
///
///
[HttpPost]
public async Task AddOrUpdateClinicalDataTrialSet(ClinicalDataTrialSetAddOrEdit indto)
{
var existsQuery = _clinicalDataTrialSetRepository
.WhereIf(indto.Id != null, x => x.Id != indto.Id)
.Where(x => x.ClinicalDataSetName == indto.ClinicalDataSetName && x.TrialId == indto.TrialId);
if (await existsQuery.AnyAsync())
{
return ResponseOutput.NotOk("存在同类型的临床数据,操作失败");
}
indto.CriterionEnumListStr = $"|{String.Join('|', indto.CriterionEnumList)}|";
var entity = await _clinicalDataTrialSetRepository.InsertOrUpdateAsync(indto, true);
//entity.TrialClinicalDataCriterionList = indto.TrialCriterionIdList.Select(t => new TrialClinicalDataCriterion()
//{
// TrialClinicalDataSetId = entity.Id,
// TrialReadingCriterionId = t
//}).ToList();
//if (indto.Id != null)
//{
// await _trialClinicalDataCriterionRepository.BatchDeleteNoTrackingAsync(t => t.TrialClinicalDataSetId == entity.Id);
// await _trialClinicalDataCriterionRepository.AddRangeAsync(entity.TrialClinicalDataCriterionList);
//}
await _clinicalDataTrialSetRepository.SaveChangesAsync();
return ResponseOutput.Ok(entity.Id.ToString());
}
///
/// 获取项目的临床数据
///
///
///
[HttpPost]
[UnitOfWork]
public async Task> GetTrialClinicalDataTrialSetList(GetTrialClinicalDataTrialIndto inDto)
{
await this.AddTrialClinicalDataTrialSet(inDto.TrialId);
var trialClinicalDataList = await _clinicalDataTrialSetRepository.AsQueryable()
.Where(x => x.TrialId == inDto.TrialId)
.WhereIf(inDto.ClinicalDataLevel != null, x => x.ClinicalDataLevel == inDto.ClinicalDataLevel)
.WhereIf(inDto.ClinicalUploadType != null, x => x.ClinicalUploadType == inDto.ClinicalUploadType)
.WhereIf(inDto.ClinicalDataSetName != String.Empty, x => x.ClinicalDataSetName.Contains(inDto.ClinicalDataSetName))
.ProjectTo(_mapper.ConfigurationProvider).ToListAsync();
return trialClinicalDataList;
}
///
/// 删除(项目)
///
///
///
[HttpDelete("{id:guid}")]
public async Task DeleteClinicalTrialSetData(Guid id)
{
await _clinicalDataTrialSetRepository.DeleteFromQueryAsync(x => x.Id == id, true);
return ResponseOutput.Result(true);
}
#endregion
#region 系统和项目标准下拉 界面上配置和临床数据关联 废弃
//[HttpPost]
//public async Task> GetSystemCriterionSelectList(SystemCriterionSelectQuery inQuery)
//{
// return await _repository.Where()
// .WhereIf(!string.IsNullOrEmpty(inQuery.CriterionName), t => t.CriterionName.Contains(inQuery.CriterionName))
// .WhereIf(inQuery.IsEnable != null, t => t.IsEnable == inQuery.IsEnable)
// .WhereIf(inQuery.IsCompleteConfig != null, t => t.IsCompleteConfig == inQuery.IsCompleteConfig)
// .Select(t => new SystemCriterionSelectDto()
// {
// Id = t.Id,
// CriterionName = t.CriterionName,
// IsCompleteConfig = t.IsCompleteConfig,
// IsEnable = t.IsEnable
// }).ToListAsync();
//}
//[HttpPost]
//public async Task> GetTrialCriterionSelectList(TrialCriterionSelectQuery inQuery)
//{
// return await _repository.Where(t => t.TrialId == inQuery.TrialId)
// .WhereIf(!string.IsNullOrEmpty(inQuery.CriterionName), t => t.CriterionName.Contains(inQuery.CriterionName))
// .WhereIf(inQuery.IsEnable != null, t => t.IsEnable == inQuery.IsEnable)
// .WhereIf(inQuery.IsCompleteConfig != null, t => t.IsCompleteConfig == inQuery.IsCompleteConfig)
// .Select(t => new TrialCriterionSelectDto()
// {
// Id = t.Id,
// CriterionName = t.CriterionName,
// IsCompleteConfig = t.IsCompleteConfig,
// IsEnable = t.IsEnable
// }).ToListAsync();
//}
#endregion
#region 将系统配置添加到项目配置
///
/// 将系统配置添加到项目配置
///
///
///
private async Task AddTrialClinicalDataTrialSet(Guid trialId)
{
#region MyRegion
if (!await _clinicalDataTrialSetRepository.AnyAsync(x => x.TrialId == trialId && x.SystemClinicalDataSetId != null))
{
var systemClinicalDataList = await _clinicalDataSystemSetRepository.AsQueryable()/*.Include(t => t.SystemClinicalDataCriterionList)*/.ToListAsync();
var systemIds = systemClinicalDataList.Select(x => x.Id).ToList();
var trialSystemClinicalDataSetIds = await _clinicalDataTrialSetRepository.Where(x => x.TrialId == trialId && x.SystemClinicalDataSetId != null).Select(x => x.SystemClinicalDataSetId.Value).ToListAsync();
var needAddids = systemIds.Except(trialSystemClinicalDataSetIds).ToList();
var systemDataList = systemClinicalDataList.Where(x => needAddids.Contains(x.Id)).ToList();
var readingCriterionList = _repository.Where(t => t.TrialId == trialId).Where(t => t.ReadingQuestionCriterionSystemId != null)
.Select(t => new { t.ReadingQuestionCriterionSystemId, TrialReadingCriterionId = t.Id }).ToList();
List dataSets = systemDataList.Select(x => new ClinicalDataTrialSet()
{
Id = NewId.NextGuid(),
SystemClinicalDataSetId = x.Id,
ClinicalDataSetName = x.ClinicalDataSetName,
ClinicalDataLevel = x.ClinicalDataLevel,
ClinicalUploadType = x.ClinicalUploadType,
UploadRole = x.UploadRole,
FileName = x.FileName,
Path = x.Path,
TrialId = trialId,
CriterionEnumListStr=x.CriterionEnumListStr
//TrialClinicalDataCriterionList = readingCriterionList.Where(t => x.SystemClinicalDataCriterionList.Select(c => (Guid?)c.SystemReadingCriterionId).ToList().Contains(t.ReadingQuestionCriterionSystemId)).Select(c =>
//new TrialClinicalDataCriterion() { TrialReadingCriterionId = c.TrialReadingCriterionId }).ToList()
}).ToList();
await _clinicalDataTrialSetRepository.AddRangeAsync(dataSets);
var result = await _clinicalDataTrialSetRepository.SaveChangesAsync();
}
#endregion
#region OLd
//var syncClinicalDataTime = await _trialRepository.Where(x => x.Id == trialId).Select(x => x.SyncClinicalDataTime).FirstOrDefaultAsync();
//if (syncClinicalDataTime == null)
//{
// var systemClinicalDataList = await _clinicalDataSystemSetRepository.AsQueryable().Include(t => t.SystemClinicalDataCriterionList).ToListAsync();
// var systemIds = systemClinicalDataList.Select(x => x.Id).ToList();
// var trialSystemClinicalDataSetIds = await _clinicalDataTrialSetRepository.Where(x => x.TrialId == trialId && x.SystemClinicalDataSetId != null).Select(x => x.SystemClinicalDataSetId.Value).ToListAsync();
// var needAddids = systemIds.Except(trialSystemClinicalDataSetIds).ToList();
// var systemDataList = systemClinicalDataList.Where(x => needAddids.Contains(x.Id)).ToList();
// var readingCriterionList = _repository.Where(t => t.TrialId == trialId).Where(t => t.ReadingQuestionCriterionSystemId != null)
// .Select(t => new { t.ReadingQuestionCriterionSystemId, TrialReadingCriterionId = t.Id }).ToList();
// List dataSets = systemDataList.Select(x => new ClinicalDataTrialSet()
// {
// Id = NewId.NextGuid(),
// SystemClinicalDataSetId = x.Id,
// ClinicalDataSetName = x.ClinicalDataSetName,
// ClinicalDataLevel = x.ClinicalDataLevel,
// ClinicalUploadType = x.ClinicalUploadType,
// UploadRole = x.UploadRole,
// FileName = x.FileName,
// Path = x.Path,
// TrialId = trialId,
// TrialClinicalDataCriterionList = readingCriterionList.Where(t => x.SystemClinicalDataCriterionList.Select(c => (Guid?)c.SystemReadingCriterionId).ToList().Contains(t.ReadingQuestionCriterionSystemId)).Select(c =>
// new TrialClinicalDataCriterion() { TrialReadingCriterionId = c.TrialReadingCriterionId }).ToList()
// }).ToList();
// #region 临床数据标准
// // dataSets.ForEach(x =>
// //x.TrialClinicalDataCriterionList = systemClinicalDataList.Where(t => t.Id == x.SystemClinicalDataSetId)
// // .Select(t => new TrialClinicalDataCriterion() { TrialReadingCriterionId = x.cl }).ToList()
// // );
// #endregion
// await _clinicalDataTrialSetRepository.AddRangeAsync(dataSets);
// //var needUpdateitemList = await _clinicalDataTrialSetRepository.Where(x => x.TrialId == trialId && needUpdateIds.Contains(x.SystemClinicalDataSetId.Value)).ToListAsync();
// //foreach (var item in needUpdateitemList)
// //{
// // var systemData = systemClinicalDataList.FirstOrDefault(x => x.Id == item.SystemClinicalDataSetId);
// // await _clinicalDataTrialSetRepository.UpdatePartialNoQueryAsync(item.Id,x=>new ClinicalDataTrialSet() {
// // ClinicalDataSetName = systemData.ClinicalDataSetName,
// // ClinicalDataLevel = systemData.ClinicalDataLevel,
// // ClinicalUploadType = systemData.ClinicalUploadType,
// // UploadRole = systemData.UploadRole,
// // FileName = systemData.FileName,
// // Path = systemData.Path,
// // });
// //}
// await _trialRepository.BatchUpdateNoTrackingAsync(x => x.Id == trialId, x => new Trial()
// {
// SyncClinicalDataTime = DateTime.Now,
// });
// var result = await _clinicalDataTrialSetRepository.SaveChangesAsync();
//}
#endregion
}
#endregion
}
}