//--------------------------------------------------------------------
// 此代码由T4模板自动生成 byzhouhang 20210918
// 生成时间 2021-12-06 10:54:55
// 对此文件的更改可能会导致不正确的行为,并且如果重新生成代码,这些更改将会丢失。
//--------------------------------------------------------------------
using Microsoft.AspNetCore.Mvc;
using Microsoft.AspNetCore.Hosting;
using Microsoft.AspNetCore.Http;
using IRaCIS.Core.Domain.Share;
using SharpCompress.Archives;
using IRaCIS.Core.Application.Filter;
using Newtonsoft.Json;
using IRaCIS.Core.Application.Service.Inspection.Interface;
using IRaCIS.Core.Application.Service.Inspection.DTO;
using Nito.AsyncEx;
using IRaCIS.Application.Interfaces;
using IRaCIS.Core.Domain.Common;
namespace IRaCIS.Core.Application.Contracts
{
///
/// NoneDicomStudyService
///
[ApiExplorerSettings(GroupName = "Image")]
public class NoneDicomStudyService : BaseService, INoneDicomStudyService
{
private readonly IRepository _noneDicomStudyRepository;
private readonly IHttpContextAccessor _httpContext;
private readonly IDictionaryService _dictionaryService;
private readonly IInspectionService _inspectionService;
private readonly IRepository _studyMonitorRepository;
private readonly IRepository _noneDicomStudyFileRepository;
private readonly AsyncLock _mutex = new AsyncLock();
public NoneDicomStudyService(IRepository noneDicomStudyRepository,
IHttpContextAccessor httpContext,
IDictionaryService dictionaryService,
IInspectionService inspectionService,
IRepository studyMonitorRepository,
IRepository noneDicomStudyFileRepository)
{
_noneDicomStudyRepository = noneDicomStudyRepository;
this._httpContext = httpContext;
this._dictionaryService = dictionaryService;
this._inspectionService = inspectionService;
this._studyMonitorRepository = studyMonitorRepository;
_noneDicomStudyFileRepository = noneDicomStudyFileRepository;
}
[HttpGet("{subjectVisitId:guid}")]
public async Task> GetNoneDicomStudyList(Guid subjectVisitId)
{
var noneDicomStudyQueryable = _noneDicomStudyRepository.Where(t => t.SubjectVisitId == subjectVisitId)
.ProjectTo(_mapper.ConfigurationProvider, new { token = _userInfo.UserToken });
return await noneDicomStudyQueryable.ToListAsync();
}
[UnitOfWork]
[TypeFilter(typeof(TrialResourceFilter))]
public async Task> AddOrUpdateNoneDicomStudy(NoneDicomStudyAddOrEdit addOrEditNoneDicomStudy)
{
NoneDicomStudy optEntity = null;
using (await _mutex.LockAsync())
{
if (addOrEditNoneDicomStudy.Id == Guid.Empty || addOrEditNoneDicomStudy.Id == null)
{
//默认会是0
var code = await _noneDicomStudyRepository.Where(t => t.TrialId == addOrEditNoneDicomStudy.TrialId).Select(x => x.Code).DefaultIfEmpty().MaxAsync();
addOrEditNoneDicomStudy.Code = code + 1;
optEntity = await _noneDicomStudyRepository.InsertFromDTOAsync(addOrEditNoneDicomStudy);
optEntity.StudyCode = "NST" + optEntity.Code.ToString("D5");
}
else
{
optEntity = await _noneDicomStudyRepository.UpdateFromDTOAsync(addOrEditNoneDicomStudy);
}
await _noneDicomStudyRepository.SaveChangesAsync();
}
NoneDicomStudyAddReturnDto noneDicom = new NoneDicomStudyAddReturnDto()
{
StudyCode = optEntity.StudyCode,
Id = optEntity.Id
};
return ResponseOutput.Ok(noneDicom);
}
[TypeFilter(typeof(TrialResourceFilter))]
[HttpDelete("{noneDicomStudyId:guid}/{trialId:guid}")]
public async Task DeleteNoneDicomStudy(Guid noneDicomStudyId)
{
if (_noneDicomStudyRepository.Where(t => t.Id == noneDicomStudyId).SelectMany(t => t.NoneDicomFileList).Count() > 0)
{
return ResponseOutput.NotOk("先移除文件,才允许删除非Dicom");
}
var noneDicomStudy = await _noneDicomStudyRepository.FirstOrDefaultAsync(t => t.Id == noneDicomStudyId);
if (noneDicomStudy == null) return Null404NotFound(noneDicomStudy);
await _noneDicomStudyRepository.DeleteAsync(noneDicomStudy);
await _noneDicomStudyFileRepository.BatchDeleteNoTrackingAsync(t => t.NoneDicomStudyId == noneDicomStudyId);
await _repository.BatchDeleteAsync(t => t.StudyId == noneDicomStudyId);
return ResponseOutput.Ok();
}
[HttpDelete("{noneDicomStudyFileId:guid}")]
public async Task DeleteNoneDicomStudyFile(Guid noneDicomStudyFileId)
{
var subjectVisitId = await _noneDicomStudyFileRepository.Where(t => t.Id == noneDicomStudyFileId).Select(t => t.NoneDicomStudy.SubjectVisitId).FirstOrDefaultAsync();
var success = await _noneDicomStudyFileRepository.BatchDeleteNoTrackingAsync(t => t.Id == noneDicomStudyFileId);
var subvisit = await _repository.GetQueryable().FirstOrDefaultAsync(x => x.Id == subjectVisitId);
return ResponseOutput.Ok();
}
///
/// 非Dicom检查 文件列表
///
///
///
[HttpGet("{noneDicomStudyId:guid}")]
public async Task> GetNoneDicomStudyFileList(Guid noneDicomStudyId)
{
return await _noneDicomStudyFileRepository.Where(t => t.NoneDicomStudyId == noneDicomStudyId)
.ProjectTo(_mapper.ConfigurationProvider, new { token = _userInfo.UserToken }).ToListAsync();
}
[HttpGet("{subjectVisitId:guid}")]
public async Task> GetVisitNoneDicomStudyFileList(Guid subjectVisitId)
{
return await _repository.Where(t => t.NoneDicomStudy.SubjectVisitId == subjectVisitId).ProjectTo(_mapper.ConfigurationProvider, new { token = _userInfo.UserToken }).ToListAsync();
}
///
/// 上传非Dicom 文件 支持压缩包
///
[HttpPost]
public async Task NewUploadNoneDicomFile([FromForm] UploadNoneDicomFileDto fileDto)
{
var file = this._httpContext.HttpContext?.Request.Form;
var result = await UploadNoneDicomFile(file, fileDto.subjectVisitId, fileDto.noneDicomStudyId);
if (result.IsSuccess)
{
var data = JsonConvert.DeserializeObject(fileDto.AuditInfo);
data.GeneralId = fileDto.noneDicomStudyId;
await _inspectionService.AddInspectionRecordAsync(data);
}
return result;
}
///
/// 上传非Dicom 文件 支持压缩包
///
///
///
///
///
//[DisableRequestSizeLimit]
[RequestSizeLimit(1_073_741_824)]
[HttpPost("{noneDicomStudyId:guid}/{subjectVisitId:guid}")]
public async Task UploadNoneDicomFile(IFormCollection formCollection, Guid subjectVisitId, Guid noneDicomStudyId)
{
var rootPath = Directory.GetParent(_hostEnvironment.ContentRootPath.TrimEnd('\\')).IfNullThrowException().FullName;
//上传根路径
var _fileStorePath = Path.Combine(rootPath, StaticData.TrialDataFolder);
var sv = await _repository.Where(t => t.Id == subjectVisitId).Select(t => new { t.TrialId, t.SiteId, t.SubjectId }).FirstOrDefaultAsync().IfNullThrowConvertException();
string uploadFolderPath = Path.Combine(_fileStorePath, sv.TrialId.ToString(), sv.SiteId.ToString(), sv.SubjectId.ToString(), subjectVisitId.ToString(), StaticData.NoneDicomFolder);
if (!Directory.Exists(uploadFolderPath))
{
Directory.CreateDirectory(uploadFolderPath);
}
var startTime = DateTime.Now;
foreach (IFormFile file in formCollection.Files)
{
if (file.FileName.Contains(".Zip", StringComparison.OrdinalIgnoreCase) || file.FileName.Contains(".rar", StringComparison.OrdinalIgnoreCase))
{
var archive = ArchiveFactory.Open(file.OpenReadStream());
foreach (var entry in archive.Entries)
{
if (!entry.IsDirectory)
{
DealCompressFile(entry, sv, subjectVisitId, noneDicomStudyId, uploadFolderPath);
}
}
}
else
{
var trustedFileNameForFileStorage = GetStoreFileName(file.FileName);
var relativePath = $"/{StaticData.TrialDataFolder}/{sv.TrialId}/{sv.SiteId}/{sv.SubjectId}/{subjectVisitId}/{StaticData.NoneDicomFolder}/{trustedFileNameForFileStorage}";
var filePath = Path.Combine(uploadFolderPath, trustedFileNameForFileStorage);
using (FileStream fs = System.IO.File.Create(filePath))
{
await file.CopyToAsync(fs);
await fs.FlushAsync();
}
await _noneDicomStudyFileRepository.AddAsync(new NoneDicomStudyFile() { FileName = file.FileName, Path = relativePath, NoneDicomStudyId = noneDicomStudyId });
}
}
// 上传非Dicom 后 将状态改为待提交 分为普通上传 和QC后重传 普通上传时才改为待提交
await _repository.BatchUpdateAsync(t => t.Id == subjectVisitId && t.SubmitState == SubmitStateEnum.None, u => new SubjectVisit() { SubmitState = SubmitStateEnum.ToSubmit });
await _studyMonitorRepository.AddAsync(new StudyMonitor()
{
FileCount = formCollection.Files.Count,
FileSize = formCollection.Files.Sum(t => t.Length),
IsDicom = false,
IsDicomReUpload = false,
StudyId = noneDicomStudyId,
UploadStartTime = startTime,
UploadFinishedTime = DateTime.Now,
IP = _userInfo.IP,
TrialId = sv.TrialId,
SiteId = sv.SiteId,
SubjectId = sv.SubjectId,
SubjectVisitId = subjectVisitId,
});
await _repository.SaveChangesAsync();
return ResponseOutput.Ok(/*list*/);
}
private string GetStoreFileName(string fileName)
{
var realName = fileName;
var fileNameEX = Path.GetExtension(realName);
var trustedFileNameForFileStorage = Guid.NewGuid().ToString() + fileNameEX;
return trustedFileNameForFileStorage;
}
private async void DealCompressFile(IArchiveEntry entry, dynamic sv, Guid subjectVisitId, Guid noneDicomStudyId, string uploadFolderPath)
{
var trustedFileNameForFileStorage = GetStoreFileName(entry.Key);
var relativePath = $"/{StaticData.TrialDataFolder}/{sv.TrialId}/{sv.SiteId}/{sv.SubjectId}/{subjectVisitId}/{StaticData.NoneDicomFolder}/{trustedFileNameForFileStorage}";
var filePath = Path.Combine(uploadFolderPath, trustedFileNameForFileStorage);
entry.WriteToFile(filePath);
var fileName = string.Empty;
if (entry.Key.Contains("\\"))
{
fileName = entry.Key.Split("\\").Last();
}
await _noneDicomStudyFileRepository.AddAsync(new NoneDicomStudyFile() { FileName = fileName, Path = relativePath, NoneDicomStudyId = noneDicomStudyId });
}
}
}