//--------------------------------------------------------------------
// 此代码由T4模板自动生成 byzhouhang 20210918
// 生成时间 2021-12-06 10:54:55
// 对此文件的更改可能会导致不正确的行为,并且如果重新生成代码,这些更改将会丢失。
//--------------------------------------------------------------------
using IRaCIS.Core.Application.Helper;
using IRaCIS.Core.Infrastructure;
using Medallion.Threading;
using Microsoft.AspNetCore.Mvc;
using System.ComponentModel.DataAnnotations;
using static ImageHelper;
namespace IRaCIS.Core.Application.Contracts
{
///
/// NoneDicomStudyService
///
[ApiExplorerSettings(GroupName = "Image")]
public class NoneDicomStudyService(IRepository _noneDicomStudyRepository,
IRepository _noneDicomStudyFileRepository,
IRepository _trialRepository,
IDistributedLockProvider _distributedLockProvider,
IRepository _subjectVisitRepository,
IRepository _visitTaskRepository, IOSSService _oSSService,
QCCommon _qCCommon, IMapper _mapper, IUserInfo _userInfo, IStringLocalizer _localizer) : BaseService, INoneDicomStudyService
{
///
/// 标注遮盖影像 路径后面加了.MaskNoneDicom_ 就是遮盖的新路径
///
///
[HttpPost]
public async Task NoneDicomStudyMaskImage(NoneDicomStudyMaskImageCommand inCommand)
{
if (inCommand.NodicomStudyId == null && inCommand.NoneDicomStudyFileIdList == null)
{
return ResponseOutput.NotOk("NodicomStudyId and NoneDicomStudyFileIdList can not both be null");
}
var idPathList = new List();
if (inCommand.NodicomStudyId == null && inCommand.NoneDicomStudyFileIdList != null)
{
idPathList = await _noneDicomStudyFileRepository.Where(t => inCommand.NoneDicomStudyFileIdList.Contains(t.Id)).ProjectTo(_mapper.ConfigurationProvider).ToListAsync();
}
else
{
idPathList = await _noneDicomStudyFileRepository.Where(t => inCommand.NodicomStudyId == t.NoneDicomStudyId).ProjectTo(_mapper.ConfigurationProvider).ToListAsync();
}
var errorList = new List();
var okList = new List();
var batchId = Guid.NewGuid();
foreach (var item in idPathList)
{
var path = item.Path;
try
{
// 1. 下载文件
using var inputStream = new MemoryStream();
await (await _oSSService.GetStreamFromOSSAsync(path)).CopyToAsync(inputStream);
inputStream.Position = 0;
// 2. 处理图片
using var outputStream = new MemoryStream();
await ImageMaskHelper.MaskAsync(inputStream, outputStream, inCommand.MaskRegionList);
outputStream.Position = 0;
var prefix = path.Substring(1, path.LastIndexOf('/') - 1);
//每次都用一个新的名字
var maskFileName = string.Empty;
if (path.Contains(".MaskNoneDicom_"))
{
//清理缓存的里面的遮盖图,多次遮盖同一张图时,清除缓存很重要
await _oSSService.DeleteFromPrefix(path, true); //清理缓存的里面的遮盖图,多次遮盖同一张图时,清除缓存很重要
//本身就是遮盖的图,那么就要要替换guid
var length = Guid.Empty.ToString().Length + ".MaskNoneDicom_".Length;
var restorePath = item.Path[..^length];
maskFileName = $"{Path.GetFileName(restorePath)}.MaskNoneDicom_{batchId}";
}
else
{
//没有遮盖的,直接加上.批次_MaskDicom
maskFileName = $"{Path.GetFileName(path)}.MaskNoneDicom_{batchId}";
}
await _oSSService.UploadToOSSAsync(outputStream, prefix, maskFileName, false);
var newPath = $"/{prefix}/{maskFileName}";
okList.Add(new DownloadFileDto() { Id = item.Id, Path = newPath });
await _noneDicomStudyFileRepository.BatchUpdateNoTrackingAsync(t => t.Id == item.Id, u => new NoneDicomStudyFile() { Path = newPath, IsMasked = true });
}
catch (Exception ex)
{
errorList.Add(new DownloadFileDto() { Id = item.Id, Path = path });
Log.Logger.Error(ex, $"NoneDicomStudyMaskImage Error for NoneDicomStudyFileIdList Path:{path} {ex.Message}");
}
}
await _noneDicomStudyFileRepository.SaveChangesAsync();
return ResponseOutput.Ok(new { OkList = okList, ErrorList = errorList });
}
///
/// 撤销遮盖的影像,可以单张,也可以整个检查
///
///
///
[HttpPost]
public async Task NoneDicomStudyUndoMaskImage(NoneDicomStudyUndoMaskImageCommand inCommand)
{
if (inCommand.NodicomStudyId == null && inCommand.NoneDicomStudyFileIdList == null)
{
return ResponseOutput.NotOk("NodicomStudyId and NoneDicomStudyFileIdList can not both be null");
}
var idPathList = new List();
if (inCommand.NodicomStudyId == null && inCommand.NoneDicomStudyFileIdList != null)
{
idPathList = await _noneDicomStudyFileRepository.Where(t => inCommand.NoneDicomStudyFileIdList.Contains(t.Id)).ProjectTo(_mapper.ConfigurationProvider).ToListAsync();
}
else
{
idPathList = await _noneDicomStudyFileRepository.Where(t => inCommand.NodicomStudyId == t.NoneDicomStudyId).ProjectTo(_mapper.ConfigurationProvider).ToListAsync();
}
var okList = new List();
foreach (var item in idPathList)
{
if (item.Path.Contains(".MaskNoneDicom_"))
{
await _oSSService.DeleteFromPrefix(item.Path, true);
var length = Guid.Empty.ToString().Length + ".MaskNoneDicom_".Length;
var newPath = item.Path[..^length];
okList.Add(new DownloadFileDto() { Id = item.Id, Path = newPath });
await _noneDicomStudyFileRepository.BatchUpdateNoTrackingAsync(t => t.Id == item.Id, u => new NoneDicomStudyFile() { Path = newPath, IsMasked = false });
}
//if (item.Path.EndsWith("."))
//{
// await _oSSService.DeleteFromPrefix(item.Path, true);
// var newPath = item.Path[..^1];
// okList.Add(new InstanceIdPath() { Id = item.Id, Path = newPath });
// await _dicomInstanceRepository.BatchUpdateNoTrackingAsync(t => t.Id == item.Id, u => new DicomInstance() { Path = newPath, IsMasked = false });
//}
}
await _noneDicomStudyFileRepository.SaveChangesAsync();
return ResponseOutput.Ok(new { OkList = okList });
}
[HttpGet]
public async Task>> GetNoneDicomStudyList(
[FromQuery, NotDefault] Guid subjectVisitId,
[FromQuery] Guid? nonedicomStudyId,
[FromQuery] bool isFilterZip,
[FromQuery] Guid? visitTaskId,
[FromQuery] bool isReading,
[FromQuery] bool? isImageSegmentLabel)
{
var qcAuditState = await _subjectVisitRepository.Where(s => s.Id == subjectVisitId).Select(t => t.AuditState).FirstOrDefaultAsync();
//质控过程中,因为会修改统计数字,但是此时其他人看,应该看到完整的影像
var isQCFinished = qcAuditState == AuditStateEnum.QCPassed;
//质控过程中并且不是IQC时,可以看到删除的(不需要忽略过滤器) 质控中iqc 也需要看到删除的
var isViewDelete = !isQCFinished;
var isFilterIVUSNoneDicom = false;
CriterionType? criterionType = null;
IQueryable noneDicomStudyQueryable = default;
if (visitTaskId == null || visitTaskId == Guid.Empty)
{
if (visitTaskId == null)
{
//质控过程中,需要忽略过滤质控设置删除的检查,以及设置删除的文件,质控通过后才
noneDicomStudyQueryable = _noneDicomStudyRepository.Where(t => t.SubjectVisitId == subjectVisitId, ignoreQueryFilters: isViewDelete)
.WhereIf(nonedicomStudyId != null, t => t.Id == nonedicomStudyId)
.WhereIf(isReading, t => t.IsReading && t.IsDeleted == false)
.ProjectTo(_mapper.ConfigurationProvider, new { isFilterZip = isFilterZip, isReading = isReading });
}
else
{
//靶段标注上传后查看影像
noneDicomStudyQueryable = _noneDicomStudyRepository.Where(t => t.SubjectVisitId == subjectVisitId, ignoreQueryFilters: isViewDelete)
.WhereIf(isReading, t => t.IsReading && t.IsDeleted == false)
.WhereIf(nonedicomStudyId != null, t => t.Id == nonedicomStudyId)
.ProjectTo(_mapper.ConfigurationProvider, new { isFilterZip = isFilterZip, isReading = isReading });
}
//ivus-在访视的时候visitTaskId==null 需要过滤掉空检查 ,但是在靶段标注的查看访视级别的时候不能过滤
if (_subjectVisitRepository.Where(t => t.Id == subjectVisitId).SelectMany(t => t.Trial.TrialReadingCriterionList)
.Where(t => (t.CriterionType == CriterionType.IVUS || t.CriterionType == CriterionType.OCT) && t.IsConfirm).Distinct().Count() == 2
&& visitTaskId == null)
{
isFilterIVUSNoneDicom = true;
}
}
else
{
var taskinfo = await _visitTaskRepository.Where(x => x.Id == visitTaskId).Select(t => new { t.BlindSubjectCode, t.TrialReadingCriterionId, t.TrialReadingCriterion.CriterionType, t.TrialReadingCriterion.IsImageFilter, t.TrialReadingCriterion.CriterionModalitys }).FirstNotNullAsync();
criterionType = taskinfo.CriterionType;
if ((taskinfo.CriterionType == CriterionType.IVUS || taskinfo.CriterionType == CriterionType.OCT) && isImageSegmentLabel == false)
{
//后处理原始影像预览
noneDicomStudyQueryable = _noneDicomStudyRepository.Where(t => t.SubjectVisitId == subjectVisitId, ignoreQueryFilters: isViewDelete)
.WhereIf(isReading, t => t.IsReading && t.IsDeleted == false)
.WhereIf(nonedicomStudyId != null, t => t.Id == nonedicomStudyId)
.Where(t => taskinfo.IsImageFilter ? ("|" + taskinfo.CriterionModalitys + "|").Contains("|" + t.Modality + "|") : true)
.ProjectTo(_mapper.ConfigurationProvider, new { isFilterZip = isFilterZip, visiTaskId = visitTaskId, isReading = isReading });
}
else
{
noneDicomStudyQueryable = _noneDicomStudyRepository.Where(t => t.TaskNoneDicomFileList.Any(t => t.VisitTaskId == visitTaskId), ignoreQueryFilters: isViewDelete)
.WhereIf(isReading, t => t.IsReading && t.IsDeleted == false)
.Where(t => taskinfo.IsImageFilter ? ("|" + taskinfo.CriterionModalitys + "|").Contains("|" + t.Modality + "|") : true)
.WhereIf(nonedicomStudyId != null, t => t.Id == nonedicomStudyId)
.ProjectTo(_mapper.ConfigurationProvider, new { isFilterZip = isFilterZip, visiTaskId = visitTaskId, isReading = isReading });
}
}
var list = await noneDicomStudyQueryable.Where(t => isFilterIVUSNoneDicom ? t.Modality != "IVUS" : true)
.OrderBy(x => x.ImageDate).ThenBy(x => x.CreateTime).ToListAsync();
var config = await _subjectVisitRepository.Where(t => t.Id == subjectVisitId).Select(t => new { t.Trial.ImageFormatList, t.Trial.StudyNameList, t.Trial.IsShowStudyName, AuditState = qcAuditState, CriterionType = criterionType }).FirstOrDefaultAsync();
return ResponseOutput.Ok(list, config);
}
[HttpPut]
public async Task UpdateNoneDicomStudy(NoneDicomEdit noneDicomEdit)
{
if (_subjectVisitRepository.Any(t => t.Id == noneDicomEdit.SubjectVisitId && (t.PreliminaryAuditUserId == _userInfo.UserRoleId || t.ReviewAuditUserId == _userInfo.UserRoleId)))
{
await _noneDicomStudyRepository.UpdateFromDTOAsync(noneDicomEdit);
await _noneDicomStudyRepository.SaveChangesAsync();
}
return ResponseOutput.Ok();
}
[UnitOfWork]
[TrialGlobalLimit("AfterStopCannNotOpt")]
public async Task> AddOrUpdateNoneDicomStudy(NoneDicomStudyAddOrEdit addOrEditNoneDicomStudy)
{
await _qCCommon.VerifyIsCRCSubmmitAsync(_subjectVisitRepository, _userInfo, addOrEditNoneDicomStudy.SubjectVisitId);
if (_trialRepository.Where(t => t.Id == addOrEditNoneDicomStudy.TrialId).Any(t => t.IsVerifyVisitImageDate == true))
{
await _qCCommon.VerifyStudyImageDataAsync(_subjectVisitRepository, addOrEditNoneDicomStudy.SubjectId, addOrEditNoneDicomStudy.SubjectVisitId, addOrEditNoneDicomStudy.ImageDate);
}
NoneDicomStudy? optEntity = null;
var @lock = _distributedLockProvider.CreateLock($"NoneDicomCode");
using (await @lock.AcquireAsync())
{
if (addOrEditNoneDicomStudy.Id == Guid.Empty || addOrEditNoneDicomStudy.Id == null)
{
if (_subjectVisitRepository.Where(t => t.Id == addOrEditNoneDicomStudy.SubjectVisitId).SelectMany(t => t.Trial.TrialReadingCriterionList)
.Where(t => (t.CriterionType == CriterionType.IVUS || t.CriterionType == CriterionType.OCT) && t.IsConfirm).Distinct().Count() == 2 && addOrEditNoneDicomStudy.Modality != "OCT")
{
throw new BusinessValidationFailedException(_localizer["NoneDicomStudy_OnlyNeedOCT"]);
}
//默认会是0
var code = await _trialRepository.Where(t => t.Id == addOrEditNoneDicomStudy.TrialId, ignoreQueryFilters: true).Select(x => x.MaxNoneDicomCode).DefaultIfEmpty().MaxAsync();
optEntity = await _noneDicomStudyRepository.InsertFromDTOAsync(addOrEditNoneDicomStudy);
optEntity.Code = code + 1;
await _trialRepository.BatchUpdateNoTrackingAsync(t => t.Id == addOrEditNoneDicomStudy.TrialId, u => new Trial() { MaxNoneDicomCode = optEntity.Code });
optEntity.StudyCode = AppSettings.GetCodeStr(optEntity.Code, nameof(NoneDicomStudy));
}
else
{
optEntity = await _noneDicomStudyRepository.UpdateFromDTOAsync(addOrEditNoneDicomStudy);
}
await _noneDicomStudyRepository.SaveChangesAsync();
}
NoneDicomStudyAddReturnDto noneDicom = new NoneDicomStudyAddReturnDto()
{
StudyCode = optEntity.StudyCode,
Id = optEntity.Id
};
return ResponseOutput.Ok(noneDicom);
}
[TrialGlobalLimit("AfterStopCannNotOpt")]
[HttpDelete("{trialId:guid}/{subjectVisitId:guid}/{noneDicomStudyId:guid}")]
public async Task DeleteNoneDicomStudy(Guid noneDicomStudyId, Guid subjectVisitId)
{
//提交了 但是IQC同意的时候 是可以删除的 | 普通提交后也不能删除
await _qCCommon.VerifyIsCRCSubmmitAsync(_subjectVisitRepository, _userInfo, subjectVisitId);
await _noneDicomStudyRepository.DeleteFromQueryAsync(noneDicomStudyId, ignoreQueryFilter: true);
await _noneDicomStudyFileRepository.DeleteFromQueryAsync(t => t.NoneDicomStudyId == noneDicomStudyId, ignoreQueryFilter: true);
//确认需求 不删除
//await _studyMonitorRepository.BatchDeleteNoTrackingAsync(t => t.StudyId == noneDicomStudyId);
await _noneDicomStudyRepository.SaveChangesAsync();
return ResponseOutput.Ok();
}
[HttpDelete("{trialId:guid}/{subjectVisitId:guid}/{noneDicomStudyFileId:guid}")]
[TrialGlobalLimit("AfterStopCannNotOpt")]
public async Task DeleteNoneDicomStudyFile(Guid noneDicomStudyFileId, Guid subjectVisitId)
{
//提交了 但是IQC同意的时候 是可以删除的 | 普通提交后也不能删除
await _qCCommon.VerifyIsCRCSubmmitAsync(_subjectVisitRepository, _userInfo, subjectVisitId);
var noneDicomStudyFile = await _noneDicomStudyFileRepository.FirstOrDefaultAsync(t => t.Id == noneDicomStudyFileId, true);
var success = await _noneDicomStudyFileRepository.DeleteAsync(noneDicomStudyFile, true);
//维护文件数量数字
var noneDicomStudy = await _noneDicomStudyRepository.FirstOrDefaultAsync(t => t.Id == noneDicomStudyFile.NoneDicomStudyId, true);
noneDicomStudy.FileCount = await _noneDicomStudyFileRepository.CountAsync(t => t.NoneDicomStudyId == noneDicomStudyFile.NoneDicomStudyId, true);
await _noneDicomStudyRepository.SaveChangesAsync();
return ResponseOutput.Ok();
}
///
/// 非Dicom检查 文件列表
///
///
///
[HttpGet("{noneDicomStudyId:guid}")]
public async Task> GetNoneDicomStudyFileList(Guid noneDicomStudyId)
{
var qcAuditState = await _noneDicomStudyFileRepository.Where(t => t.NoneDicomStudyId == noneDicomStudyId).Select(t => t.NoneDicomStudy.SubjectVisit.AuditState).FirstOrDefaultAsync();
//质控过程中,因为会修改统计数字,但是此时其他人看,应该看到完整的影像
var isQCFinished = qcAuditState == AuditStateEnum.QCPassed;
//质控过程中并且不是IQC时,可以看到删除的(不需要忽略过滤器)
var isViewDelete = !isQCFinished;
return await _noneDicomStudyFileRepository.Where(t => t.NoneDicomStudyId == noneDicomStudyId, ignoreQueryFilters: isViewDelete)
.ProjectTo(_mapper.ConfigurationProvider).OrderBy(t => t.CreateTime).ToListAsync();
}
[HttpGet("{subjectVisitId:guid}")]
public async Task> GetVisitNoneDicomStudyFileList(Guid subjectVisitId)
{
var qcAuditState = await _subjectVisitRepository.Where(s => s.Id == subjectVisitId).Select(t => t.AuditState).FirstOrDefaultAsync();
//质控过程中,因为会修改统计数字,但是此时其他人看,应该看到完整的影像
var isQCFinished = qcAuditState == AuditStateEnum.QCPassed;
//质控过程中并且不是IQC时, 不需要忽略过滤器+质控设置删除的
var isViewDelete = !isQCFinished;
return await _noneDicomStudyFileRepository.Where(t => t.NoneDicomStudy.SubjectVisitId == subjectVisitId, ignoreQueryFilters: isViewDelete)
.ProjectTo(_mapper.ConfigurationProvider).ToListAsync();
}
}
}