irc-netcore-api/IRaCIS.Core.Application/Service/Reading/ReadingClinicalDataService.cs

495 lines
24 KiB
C#

using IRaCIS.Application.Interfaces;
using IRaCIS.Core.Infra.EFCore;
using IRaCIS.Core.Domain.Share;
using IRaCIS.Core.Application.Filter;
using Microsoft.AspNetCore.Mvc;
using IRaCIS.Core.Application.Service.WorkLoad.DTO;
using Microsoft.AspNetCore.Authorization;
using IRaCIS.Core.Application.Auth;
using IRaCIS.Core.Application.Service.Reading.Dto;
using MassTransit;
using System.ComponentModel.DataAnnotations;
using System.Reflection;
using IRaCIS.Core.Infra.EFCore.Common;
using IRaCIS.Core.Application.Contracts;
using IRaCIS.Core.Application.Service.Inspection.DTO;
using Panda.DynamicWebApi.Attributes;
namespace IRaCIS.Application.Services
{
/// <summary>
/// 阅片临床数据
/// </summary>
[ApiExplorerSettings(GroupName = "Reading")]
public class ReadingClinicalDataService : BaseService, IReadingClinicalDataService
{
private readonly IRepository<ReadingClinicalData> _readingClinicalDataRepository;
private readonly IRepository<ClinicalDataTrialSet> _clinicalDataTrialSetRepository;
private readonly IRepository<VisitTask> _visitTaskRepository;
private readonly IRepository<PreviousPDF> _previousPDFRepository;
private readonly IRepository<SubjectVisit> _subjectVisitRepository;
private readonly IRepository<PreviousHistory> _previousHistoryRepository;
private readonly IRepository<PreviousOther> _previousOtherRepository;
private readonly IRepository<PreviousSurgery> _previousSurgeryRepository;
private readonly IReadingImageTaskService readingImageTaskService;
private readonly IRepository<Subject> _subjectRepository;
private readonly IRepository<ReadModule> _readModuleRepository;
private readonly IRepository<ReadingClinicalDataPDF> _readingClinicalDataPDFRepository;
public ReadingClinicalDataService(IRepository<ReadingClinicalData> readingClinicalDataRepository,
IRepository<ClinicalDataTrialSet> clinicalDataTrialSetRepository,
IRepository<PreviousPDF> previousPDFRepository,
IRepository<SubjectVisit> subjectVisitRepository,
IRepository<PreviousHistory> previousHistoryRepository,
IRepository<PreviousOther> previousOtherRepository,
IRepository<PreviousSurgery> previousSurgeryRepository,
IReadingImageTaskService readingImageTaskService,
IRepository<Subject> subjectRepository,
IRepository<ReadModule> readModuleRepository,
IRepository<ReadingClinicalDataPDF> readingClinicalDataPDFRepository,
IRepository<VisitTask> visitTaskRepository)
{
this._readingClinicalDataRepository = readingClinicalDataRepository;
this._clinicalDataTrialSetRepository = clinicalDataTrialSetRepository;
this._previousPDFRepository = previousPDFRepository;
this._subjectVisitRepository = subjectVisitRepository;
this._previousHistoryRepository = previousHistoryRepository;
this._previousOtherRepository = previousOtherRepository;
this._previousSurgeryRepository = previousSurgeryRepository;
this.readingImageTaskService = readingImageTaskService;
this._subjectRepository = subjectRepository;
this._readModuleRepository = readModuleRepository;
this._readingClinicalDataPDFRepository = readingClinicalDataPDFRepository;
this._visitTaskRepository = visitTaskRepository;
}
/// <summary>
/// 新增或者修改
/// </summary>
/// <param name="indto"></param>
/// <returns></returns>
[HttpPost]
public async Task<IResponseOutput> AddOrUpdateReadingClinicalData(AddOrUpdateReadingClinicalDataDto indto)
{
var existsQuery = _readingClinicalDataRepository
.WhereIf(indto.Id != null, x => x.Id != indto.Id)
.Where(x => x.ClinicalDataTrialSetId == indto.ClinicalDataTrialSetId && x.ReadingId == indto.ReadingId);
if (await existsQuery.AnyAsync())
{
return ResponseOutput.NotOk("存在同类型的临床数据");
}
var clinicalDataTrialSet = (await _clinicalDataTrialSetRepository.Where(x => x.Id == indto.ClinicalDataTrialSetId).FirstOrDefaultAsync()).IfNullThrowException();
if (indto.Id == null)
{
var entity = _mapper.Map<ReadingClinicalData>(indto);
entity.ReadingClinicalDataPDFList = indto.AddFileList.Select(x => new ReadingClinicalDataPDF()
{
TrialId = entity.TrialId,
SubjectId = indto.SubjectId,
FileName = x.FileName,
Path = x.Path,
ClinicalDataTrialSetId = indto.ClinicalDataTrialSetId,
IsVisit = indto.IsVisit,
ClinicalDataLevel = clinicalDataTrialSet.ClinicalDataLevel,
ReadingId = indto.ReadingId
}).ToList();
await _readingClinicalDataRepository.AddAsync(entity, true);
var success = await _readingClinicalDataRepository.SaveChangesAsync();
return ResponseOutput.Ok(entity.Id);
}
else
{
var entity = (await _readingClinicalDataRepository.Where(t => t.Id == indto.Id, true).FirstOrDefaultAsync()).IfNullThrowException();
_mapper.Map(indto, entity);
await _readingClinicalDataPDFRepository.DeleteFromQueryAsync(x => indto.DeleteFileIds.Contains(x.Id));
await _readingClinicalDataRepository.SaveChangesAsync();
var addFileList = indto.AddFileList.Select(x => new ReadingClinicalDataPDF()
{
TrialId = entity.TrialId,
SubjectId = indto.SubjectId,
FileName = x.FileName,
Path = x.Path,
ClinicalDataTrialSetId = indto.ClinicalDataTrialSetId,
IsVisit = indto.IsVisit,
ClinicalDataLevel = clinicalDataTrialSet.ClinicalDataLevel,
ReadingId = indto.ReadingId,
ReadingClinicalDataId = entity.Id,
}).ToList();
await _readingClinicalDataPDFRepository.AddRangeAsync(addFileList);
var success = await _readingClinicalDataRepository.SaveChangesAsync();
return ResponseOutput.Ok(entity.Id);
}
}
/// <summary>
/// 获取CRC上传的文件
/// </summary>
/// <param name="inDto"></param>
/// <returns></returns>
[HttpPost]
public async Task<List<GetCRCClinicalDataOutDto>> GetCRCClinicalData(GetCRCClinicalDataInDto inDto)
{
await this.AddCRCClinicalData(inDto);
List<GetCRCClinicalDataOutDto> cRCClinicalDataList = await _readingClinicalDataRepository.Where(x => x.ReadingId == inDto.SubjectVisitId)
.Where(x => x.ClinicalDataTrialSet.TrialId == inDto.TrialId && x.ClinicalDataTrialSet.UploadRole == UploadRole.CRC && x.ClinicalDataTrialSet.ClinicalDataLevel != ClinicalLevel.Read && x.ClinicalDataTrialSet.IsConfirm)
.Select(x => new GetCRCClinicalDataOutDto()
{
Id = x.Id,
ClinicalDataSetName = x.ClinicalDataTrialSet.ClinicalDataSetName,
ClinicalUploadType = x.ClinicalDataTrialSet.ClinicalUploadType,
ClinicalDataTrialSetId = x.ClinicalDataTrialSet.Id,
FileName = x.ClinicalDataTrialSet.FileName,
UploadRole = x.ClinicalDataTrialSet.UploadRole,
Path = x.ClinicalDataTrialSet.Path,
}).ToListAsync();
List<GetReadingClinicalDataListOutDto> clinicalData = (await this.GetReadingClinicalDataList(new GetReadingClinicalDataListIndto()
{
SubjectId = inDto.SubjectId,
ReadingId = inDto.SubjectVisitId,
TrialId = inDto.TrialId,
})).Item1;
var previousHistoryList = await _previousHistoryRepository.Where(x => x.SubjectVisitId == inDto.SubjectVisitId).ProjectTo<PreviousHistoryView>(_mapper.ConfigurationProvider).ToListAsync();
var previousOtherList = await _previousOtherRepository.Where(x => x.SubjectVisitId == inDto.SubjectVisitId).ProjectTo<PreviousOtherView>(_mapper.ConfigurationProvider).ToListAsync();
var previousSurgeryList = await _previousSurgeryRepository.Where(x => x.SubjectVisitId == inDto.SubjectVisitId).ProjectTo<PreviousSurgeryView>(_mapper.ConfigurationProvider).ToListAsync();
foreach (var item in cRCClinicalDataList)
{
item.PDFFileList = clinicalData.Where(y => y.ClinicalDataTrialSetId == item.ClinicalDataTrialSetId).SelectMany(x => x.FileList).ToList();
item.ClinicalTableData = new ClinicalDataTable()
{
PreviousHistoryList = previousHistoryList.Where(x => x.ClinicalDataTrialSetId == item.ClinicalDataTrialSetId).ToList(),
PreviousOtherList = previousOtherList.Where(x => x.ClinicalDataTrialSetId == item.ClinicalDataTrialSetId).ToList(),
PreviousSurgeryList = previousSurgeryList.Where(x => x.ClinicalDataTrialSetId == item.ClinicalDataTrialSetId).ToList(),
};
}
return cRCClinicalDataList;
}
/// <summary>
/// 添加CRC数据类型
/// </summary>
/// <returns></returns>
private async Task AddCRCClinicalData(GetCRCClinicalDataInDto inDto)
{
var cRCClinicalDataIds = await _clinicalDataTrialSetRepository.Where(x => x.TrialId == inDto.TrialId && x.UploadRole == UploadRole.CRC && x.ClinicalDataLevel != ClinicalLevel.Read && x.IsConfirm).Select(x => x.Id).ToListAsync();
var needAddIds = cRCClinicalDataIds.Where(x => _readingClinicalDataRepository.Where(y => y.ReadingId == inDto.SubjectVisitId && x == y.ClinicalDataTrialSetId).Count() == 0).ToList();
List<ReadingClinicalData> readingClinicals = needAddIds.Select(x => new ReadingClinicalData()
{
ClinicalDataTrialSetId = x,
IsVisit = true,
SubjectId = inDto.SubjectId,
ReadingId = inDto.SubjectVisitId,
TrialId = inDto.TrialId
}).ToList();
await _readingClinicalDataRepository.AddRangeAsync(readingClinicals);
await _readingClinicalDataRepository.SaveChangesAsync();
}
///// <summary>
///// 设置临床数据是否盲化
///// </summary>
///// <returns></returns>
//[HttpPost]
//public async Task<IResponseOutput> SetReadingClinicalDataIsBlind(SetReadingClinicalDataIsBlind inDto)
//{
// await _readingClinicalDataRepository.UpdatePartialFromQueryAsync(inDto.Id, x=>new ReadingClinicalData() {
// IsBlind=inDto.IsBlind,
// });
// return ResponseOutput.Ok(await _readingClinicalDataRepository.SaveChangesAsync());
//}
/// <summary>
/// 删除
/// </summary>
/// <param name="id"></param>
/// <returns></returns>
[HttpDelete("{id:guid}")]
public async Task<IResponseOutput> DeleteReadingClinicalData(Guid id)
{
await _readingClinicalDataRepository.DeleteFromQueryAsync(x => x.Id == id, true);
return ResponseOutput.Result(true);
}
/// <summary>
/// 获取下拉菜单
/// </summary>
/// <param name="inDto"></param>
/// <returns></returns>
[HttpPost]
public async Task<List<GetTrialClinicalDataSelectOutDto>> GetTrialClinicalDataSelect(GetTrialClinicalDataSelectIndto inDto)
{
var userTypes = new List<int>() {
(int)UserTypeEnum.ProjectManager,
(int)UserTypeEnum.SPM,
(int)UserTypeEnum.CPM,
(int)UserTypeEnum.IndependentReviewer,
};
if (userTypes.Contains(_userInfo.UserTypeEnumInt))
{
inDto.UploadRole = UploadRole.PM;
}
var usedIdsQuery = _readingClinicalDataRepository.Where(x => x.ReadingId == inDto.ReadingId && x.Id != inDto.ReadingClinicalDataId).Select(x => x.ClinicalDataTrialSetId);
List<GetTrialClinicalDataSelectOutDto> clinicalList = await _clinicalDataTrialSetRepository.Where(x => x.TrialId == inDto.TrialId && x.IsConfirm)
.WhereIf(inDto.UploadRole != null, x => x.UploadRole == inDto.UploadRole)
.Where(x => !usedIdsQuery.Contains(x.Id))
.WhereIf(inDto.IsVisit && inDto.IsBaseLine, x => x.ClinicalDataLevel == ClinicalLevel.Subject || x.ClinicalDataLevel == ClinicalLevel.SubjectVisit)
.WhereIf(inDto.IsVisit && !inDto.IsBaseLine, x => x.ClinicalDataLevel == ClinicalLevel.SubjectVisit)
.WhereIf(!inDto.IsVisit, x => x.ClinicalDataLevel == ClinicalLevel.Read)
.Select(x => new GetTrialClinicalDataSelectOutDto()
{
ClinicalDataLevel = x.ClinicalDataLevel,
ClinicalDataSetName = x.ClinicalDataSetName,
ClinicalUploadType = x.ClinicalUploadType,
FileName = x.FileName,
Path = x.Path,
Id = x.Id
}).ToListAsync();
return clinicalList;
}
/// <summary>
/// 影像阅片临床数据签名
/// </summary>
// [HttpPost]
[NonDynamicMethod]
public async Task<IResponseOutput> ReadClinicalDataSign(ReadingClinicalDataSignIndto inDto)
{
await _readingClinicalDataRepository.UpdatePartialFromQueryAsync(x => x.Id == inDto.ReadingClinicalDataId, x => new ReadingClinicalData()
{
IsSign = true
});
var result = await _readingClinicalDataRepository.SaveChangesAsync();
var readingId = await _readingClinicalDataRepository.Where(x => x.Id == inDto.ReadingClinicalDataId).Select(x => x.ReadingId).FirstOrDefaultAsync();
await readingImageTaskService.AddOncologyTask(readingId);
return ResponseOutput.Result(result);
}
/// <summary>
/// 获取访视 阅片或任务临床数据
/// </summary>
/// <param name="inDto"></param>
/// <returns></returns>
[HttpPost]
public async Task<(List<GetReadingClinicalDataListOutDto>, object)> GetReadingOrTaskClinicalDataList(GetReadingOrTaskClinicalDataListInDto inDto)
{
var readingNameOrTaskBlindName = string.Empty;
if (inDto.ReadingId == null)
{
var visitTask = await _visitTaskRepository.FirstOrDefaultAsync(x => x.Id == inDto.VisitTaskId);
inDto.ReadingId = visitTask.SouceReadModuleId ?? visitTask.SourceSubjectVisitId;
readingNameOrTaskBlindName = visitTask.TaskBlindName;
}
if (readingNameOrTaskBlindName.IsNullOrEmpty())
{
readingNameOrTaskBlindName = await _subjectVisitRepository.Where(x => x.Id == inDto.ReadingId).Select(x => x.VisitName).FirstOrDefaultAsync();
if (readingNameOrTaskBlindName.IsNullOrEmpty())
{
readingNameOrTaskBlindName = await _readModuleRepository.Where(x => x.Id == inDto.ReadingId).Select(x => x.ModuleName).FirstOrDefaultAsync();
}
}
var result = await GetClinicalDataList(inDto);
var previousHistoryList = await _previousHistoryRepository.Where(x => x.SubjectVisitId == inDto.ReadingId).ProjectTo<PreviousHistoryView>(_mapper.ConfigurationProvider).ToListAsync();
var previousOtherList = await _previousOtherRepository.Where(x => x.SubjectVisitId == inDto.ReadingId).ProjectTo<PreviousOtherView>(_mapper.ConfigurationProvider).ToListAsync();
var previousSurgeryList = await _previousSurgeryRepository.Where(x => x.SubjectVisitId == inDto.ReadingId).ProjectTo<PreviousSurgeryView>(_mapper.ConfigurationProvider).ToListAsync();
foreach (var item in result)
{
item.ClinicalTableData = new ClinicalDataTable()
{
PreviousHistoryList = previousHistoryList.Where(x => x.ClinicalDataTrialSetId == item.ClinicalDataTrialSetId).ToList(),
PreviousOtherList = previousOtherList.Where(x => x.ClinicalDataTrialSetId == item.ClinicalDataTrialSetId).ToList(),
PreviousSurgeryList = previousSurgeryList.Where(x => x.ClinicalDataTrialSetId == item.ClinicalDataTrialSetId).ToList(),
};
}
return (result, new
{
SubjectCode = await _subjectRepository.Where(x => x.Id == inDto.SubjectId).Select(x => x.Code).FirstOrDefaultAsync(),
ReadingNameOrTaskBlindName = readingNameOrTaskBlindName,
});
}
[NonDynamicMethod]
public async Task<List<GetReadingClinicalDataListOutDto>> GetClinicalDataList(GetReadingOrTaskClinicalDataListInDto inDto)
{
if (inDto.ReadingId == null)
{
var visitTask = await _visitTaskRepository.FirstOrDefaultAsync(x => x.Id == inDto.VisitTaskId);
inDto.ReadingId = visitTask.SouceReadModuleId ?? visitTask.SourceSubjectVisitId;
}
var resultQuery = _readingClinicalDataRepository.Where(x => x.SubjectId == inDto.SubjectId)
.WhereIf(inDto.ReadingClinicalDataId != null, x => x.Id == inDto.ReadingClinicalDataId)
.Where(x => x.ReadingId == inDto.ReadingId || (x.SubjectId == inDto.SubjectId && x.ClinicalDataTrialSet.ClinicalDataLevel == ClinicalLevel.Subject))
.Select(x => new GetReadingClinicalDataListOutDto()
{
ClinicalDataLevel = x.ClinicalDataTrialSet.ClinicalDataLevel,
SubjectId = x.SubjectId,
ClinicalDataSetName = x.ClinicalDataTrialSet.ClinicalDataSetName,
ClinicalDataTrialSetId = x.ClinicalDataTrialSetId,
IsSign = x.IsSign,
ClinicalUploadType = x.ClinicalDataTrialSet.ClinicalUploadType,
Id = x.Id,
UploadRole = x.ClinicalDataTrialSet.UploadRole,
IsCRCUpload = x.ClinicalDataTrialSet.UploadRole == UploadRole.CRC,
FileList = x.ReadingClinicalDataPDFList.Select(y => new GetFileDto()
{
Id = y.Id,
FileName = y.FileName,
Path = y.Path,
CreateTime = y.CreateTime,
}).ToList()
});
var result = await resultQuery.ToListAsync();
result = result.Where(x => !(x.ClinicalUploadType == ClinicalUploadType.PDF && x.FileList.Count() == 0)).ToList();
return result;
}
/// <summary>
/// 获取阅片临床数据列表
/// </summary>
/// <param name="inDto"></param>
/// <returns></returns>
[HttpPost]
public async Task<(List<GetReadingClinicalDataListOutDto>,object)> GetReadingClinicalDataList(GetReadingClinicalDataListIndto inDto)
{
GetTrialClinicalDataSelectIndto getTrialClinicalDataSelectIndto = new GetTrialClinicalDataSelectIndto()
{
ReadingId = inDto.ReadingId,
TrialId = inDto.TrialId,
IsBaseLine = inDto.IsBaseLine,
SubjectId = inDto.SubjectId,
IsVisit = inDto.IsVisit,
};
var clinicalDataList = await this.GetTrialClinicalDataSelect(getTrialClinicalDataSelectIndto);
if (_userInfo.UserTypeEnumInt == (int)UserTypeEnum.ClinicalResearchCoordinator || _userInfo.UserTypeEnumInt == (int)UserTypeEnum.IQC)
{
inDto.UploadRole = UploadRole.CRC;
}
var isBaseLine = await _subjectVisitRepository.AnyAsync(x => x.Id == inDto.ReadingId && x.IsBaseLine);
var result =await this.GetReadingClinicalList(inDto);
var previousHistoryList = await _previousHistoryRepository.Where(x => x.SubjectVisitId == inDto.ReadingId).ProjectTo<PreviousHistoryView>(_mapper.ConfigurationProvider).ToListAsync();
var previousOtherList = await _previousOtherRepository.Where(x => x.SubjectVisitId == inDto.ReadingId).ProjectTo<PreviousOtherView>(_mapper.ConfigurationProvider).ToListAsync();
var previousSurgeryList = await _previousSurgeryRepository.Where(x => x.SubjectVisitId == inDto.ReadingId).ProjectTo<PreviousSurgeryView>(_mapper.ConfigurationProvider).ToListAsync();
foreach (var item in result)
{
item.ClinicalTableData = new ClinicalDataTable()
{
PreviousHistoryList = previousHistoryList.Where(x => x.ClinicalDataTrialSetId == item.ClinicalDataTrialSetId).ToList(),
PreviousOtherList = previousOtherList.Where(x => x.ClinicalDataTrialSetId == item.ClinicalDataTrialSetId).ToList(),
PreviousSurgeryList = previousSurgeryList.Where(x => x.ClinicalDataTrialSetId == item.ClinicalDataTrialSetId).ToList(),
};
}
return (result, new {
isCanAddClinicalData= clinicalDataList.Count()>0,
}) ;
}
/// <summary>
/// 获取临床数据集合
/// </summary>
/// <returns></returns>
[NonDynamicMethod]
public async Task<List<GetReadingClinicalDataListOutDto>> GetReadingClinicalList(GetReadingClinicalDataListIndto inDto)
{
var resultQuery = _readingClinicalDataRepository.Where(x => x.SubjectId == inDto.SubjectId)
.Where(x => x.ReadingId == inDto.ReadingId)
.WhereIf(inDto.UploadRole == UploadRole.CRC, x => x.ClinicalDataTrialSet.UploadRole == UploadRole.CRC)
.Select(x => new GetReadingClinicalDataListOutDto()
{
ClinicalDataLevel = x.ClinicalDataTrialSet.ClinicalDataLevel,
SubjectId = x.SubjectId,
ClinicalDataSetName = x.ClinicalDataTrialSet.ClinicalDataSetName,
ClinicalDataTrialSetId = x.ClinicalDataTrialSetId,
IsSign = x.IsSign,
ClinicalUploadType = x.ClinicalDataTrialSet.ClinicalUploadType,
Id = x.Id,
UploadRole = x.ClinicalDataTrialSet.UploadRole,
IsCRCUpload = x.ClinicalDataTrialSet.UploadRole == UploadRole.CRC,
FileList = x.ReadingClinicalDataPDFList.Select(y => new GetFileDto()
{
Id = y.Id,
FileName = y.FileName,
Path = y.Path,
CreateTime = y.CreateTime,
}).ToList()
});
var result = await resultQuery.ToListAsync();
result = result.Where(x => !(x.UploadRole == UploadRole.CRC && x.ClinicalUploadType == ClinicalUploadType.PDF && x.FileList.Count() == 0)).ToList();
return result;
}
/// <summary>
/// 获取单个阅片临床数据的所有文件
/// </summary>
/// <param name="inDto"></param>
/// <returns></returns>
[HttpPost]
public async Task<PageOutput<GetReadingClinicalDataPDFListOutDto>> GetReadingClinicalDataPDFList(GetReadingClinicalDataPDFListIndto inDto) {
var result = await _readingClinicalDataPDFRepository.Where(x => x.ReadingClinicalDataId == inDto.ReadingClinicalDataId).ProjectTo<GetReadingClinicalDataPDFListOutDto>(_mapper.ConfigurationProvider)
.ToPagedListAsync(inDto.PageIndex, inDto.PageSize, inDto.SortField == null ? nameof(GetReadingClinicalDataPDFListOutDto.FileName) : inDto.SortField,
inDto.Asc);
return result;
}
/// <summary>
/// 删除PDF单个文件
/// </summary>
/// <param name="id"></param>
/// <returns></returns>
[HttpDelete("{id:guid}")]
public async Task<IResponseOutput> DeleteReadingClinicalDataPDF(Guid id)
{
await _readingClinicalDataPDFRepository.DeleteFromQueryAsync(x => x.Id == id, true);
return ResponseOutput.Result(true);
}
}
}