394 lines
17 KiB
C#
394 lines
17 KiB
C#
using IRaCIS.Application.Interfaces;
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using IRaCIS.Application.Contracts;
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using IRaCIS.Core.Application.Filter;
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using IRaCIS.Core.Domain.Share;
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using Microsoft.AspNetCore.Mvc;
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using Microsoft.AspNetCore.Authorization;
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using IRaCIS.Core.Application.Auth;
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using MassTransit;
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using Panda.DynamicWebApi.Attributes;
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using DocumentFormat.OpenXml.Spreadsheet;
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using AutoMapper.EntityFrameworkCore;
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using IRaCIS.Core.Domain.Models;
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using IRaCIS.Core.Application.Service.Reading.Dto;
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using Microsoft.Extensions.Options;
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using Microsoft.Extensions.Configuration;
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using Microsoft.Extensions.Configuration.Json;
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using Newtonsoft.Json;
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using Newtonsoft.Json.Linq;
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using SharpCompress.Common;
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using System.Reactive.Subjects;
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using Subject = IRaCIS.Core.Domain.Models.Subject;
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using IRaCIS.Core.Application.ViewModel;
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using Medallion.Threading;
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using IRaCIS.Core.Infrastructure;
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using EasyCaching.Core;
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using Pipelines.Sockets.Unofficial.Arenas;
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using IRaCIS.Core.Application.Contracts;
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using MailKit.Search;
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using DocumentFormat.OpenXml.Office2010.Excel;
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using IRaCIS.Core.Application.Contracts.Dicom.DTO;
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using IRaCIS.Core.Application.Helper;
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using NPOI.SS.Formula.Functions;
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using System.Linq;
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using System.Linq.Dynamic.Core;
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using System.Text;
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using DocumentFormat.OpenXml.EMMA;
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using Azure;
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using System.IO.Compression;
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using static IRaCIS.Core.Domain.Share.StaticData;
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using FellowOakDicom;
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using DocumentFormat.OpenXml.Office2010.Drawing;
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using EasyCaching.Core.DistributedLock;
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using IDistributedLockProvider = Medallion.Threading.IDistributedLockProvider;
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using DocumentFormat.OpenXml.InkML;
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namespace IRaCIS.Application.Services
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{
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[ApiExplorerSettings(GroupName = "Trial")]
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public class PatientService : BaseService
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{
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private readonly IRepository<Trial> _trialRepository;
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private readonly IRepository<SCPPatient> _patientRepository;
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private readonly IRepository<SCPStudy> _scpStudyRepository;
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private readonly IRepository<Subject> _subjectRepository;
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private readonly IRepository<SubjectVisit> _subjectVisitRepository;
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private readonly IDistributedLockProvider _distributedLockProvider;
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public PatientService(IRepository<SCPStudy> studyRepository, IRepository<Trial> trialRepository, IRepository<SCPPatient> patientRepository, IRepository<Subject> subjectRepository, IRepository<SubjectVisit> subjectVisitRepository, IDistributedLockProvider distributedLockProvider)
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{
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_scpStudyRepository = studyRepository;
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_trialRepository = trialRepository;
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_patientRepository = patientRepository;
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_subjectRepository = subjectRepository;
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_subjectVisitRepository = subjectVisitRepository;
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_distributedLockProvider = distributedLockProvider;
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}
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/// <summary>
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/// scp 影像推送记录表
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/// </summary>
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/// <param name="inQuery"></param>
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/// <returns></returns>
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[HttpPost]
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public async Task<IResponseOutput<PageOutput<SCPImageUploadView>>> GetSCPImageUploadList(SCPImageUploadQuery inQuery)
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{
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var query = _repository.Where<SCPImageUpload>()
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.WhereIf(!string.IsNullOrWhiteSpace(inQuery.CalledAE), t => t.CalledAE.Contains(inQuery.CalledAE))
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.WhereIf(!string.IsNullOrWhiteSpace(inQuery.CallingAEIP), t => t.CallingAEIP.Contains(inQuery.CallingAEIP))
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.WhereIf(!string.IsNullOrWhiteSpace(inQuery.CallingAE), t => t.CallingAE.Contains(inQuery.CallingAE))
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.WhereIf(inQuery.StartTime != null, t => t.StartTime >= inQuery.StartTime)
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.WhereIf(inQuery.EndTime != null, t => t.EndTime <= inQuery.EndTime)
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.WhereIf(!string.IsNullOrWhiteSpace(inQuery.TrialSiteKeyInfo), t => t.TrialSite.TrialSiteCode.Contains(inQuery.TrialSiteKeyInfo)
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|| t.TrialSite.TrialSiteAliasName.Contains(inQuery.TrialSiteKeyInfo) || t.TrialSite.TrialSiteName.Contains(inQuery.TrialSiteKeyInfo))
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.ProjectTo<SCPImageUploadView>(_mapper.ConfigurationProvider);
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var pageList = await query.ToPagedListAsync(inQuery.PageIndex, inQuery.PageSize, inQuery.SortField == string.Empty ? nameof(SCPImageUploadView.CallingAE) : inQuery.SortField, inQuery.Asc);
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return ResponseOutput.Ok(pageList);
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}
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#region 患者检查管理
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/// <summary>
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///影像检查列表-患者为维度组织
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/// </summary>
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/// <param name="inQuery"></param>
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/// <returns></returns>
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[HttpPost]
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public async Task<IResponseOutput<PageOutput<PatientSubjectView>>> GetPatientList(PatientTrialQuery inQuery)
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{
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#region new ok
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var query = _patientRepository.Where(t => t.TrialId == inQuery.TrialId)
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.WhereIf(!string.IsNullOrWhiteSpace(inQuery.PatientIdStr), t => t.PatientIdStr.Contains(inQuery.PatientIdStr))
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.WhereIf(!string.IsNullOrWhiteSpace(inQuery.PatientName), t => t.PatientName.Contains(inQuery.PatientName))
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.WhereIf(!string.IsNullOrWhiteSpace(inQuery.SubejctCode), t => t.Subject.Code.Contains(inQuery.SubejctCode))
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.WhereIf(!string.IsNullOrWhiteSpace(inQuery.TrialSiteKeyInfo), t => t.TrialSite.TrialSiteCode.Contains(inQuery.TrialSiteKeyInfo)
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|| t.TrialSite.TrialSiteAliasName.Contains(inQuery.TrialSiteKeyInfo) || t.TrialSite.TrialSiteName.Contains(inQuery.TrialSiteKeyInfo))
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.WhereIf(!string.IsNullOrWhiteSpace(inQuery.CallingAE), t => t.SCPStudyList.Any(t => t.CallingAE == inQuery.CallingAE))
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.WhereIf(!string.IsNullOrWhiteSpace(inQuery.CalledAE), t => t.SCPStudyList.Any(t => t.CalledAE == inQuery.CalledAE))
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.WhereIf(inQuery.BeginPushTime != null, t => t.LatestPushTime >= inQuery.BeginPushTime)
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.WhereIf(inQuery.EndPushTime != null, t => t.LatestPushTime <= inQuery.EndPushTime);
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//foreach (var calledAE in inQuery.CalledAEList)
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//{
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// query = query.Where(t => t.SCPStudyList.Select(c => c.CalledAE).Contains(calledAE));
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//}
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var resultQuery = from patient in query
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select new PatientSubjectView()
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{
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PatientId = patient.Id,
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PatientBirthDate = patient.PatientBirthDate,
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CreateTime = patient.CreateTime,
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CalledAEList = patient.SCPStudyList.Select(t => t.CalledAE).Distinct().ToList(),
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CallingAEList = patient.SCPStudyList.Select(t => t.CallingAE).Distinct().ToList(),
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CreateUserId = patient.CreateUserId,
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UpdateTime = patient.UpdateTime,
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UpdateUserId = patient.UpdateUserId,
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EarliestStudyTime = patient.EarliestStudyTime,
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LatestStudyTime = patient.LatestStudyTime,
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LatestPushTime = patient.LatestPushTime,
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PatientAge = patient.PatientAge,
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PatientName = patient.PatientName,
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PatientIdStr = patient.PatientIdStr,
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PatientSex = patient.PatientSex,
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StudyCount = patient.SCPStudyList.Count(),
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TrialId = patient.TrialId,
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SubejctId = patient.SubjectId,
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SubjectCode = patient.Subject.Code,
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TrialSiteAliasName = patient.TrialSite.TrialSiteAliasName,
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TrialSiteCode = patient.TrialSite.TrialSiteCode,
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TrialSiteName = patient.TrialSite.TrialSiteName
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};
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var pageList = await resultQuery.ToPagedListAsync(inQuery.PageIndex, inQuery.PageSize, inQuery.SortField == string.Empty ? nameof(PatientQueryView.PatientIdStr) : inQuery.SortField, inQuery.Asc);
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#endregion
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return ResponseOutput.Ok(pageList);
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}
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/// <summary>
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/// 影像检查列表-> 获取患者的检查列表
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/// </summary>
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/// <param name="inQuery"></param>
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/// <returns></returns>
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[HttpPost]
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public async Task<PageOutput<PatientStudySimpleView>> GetPatientStudyList(PatientStudyInfoQuery inQuery)
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{
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var query = from scpStudy in _scpStudyRepository.Where(t => t.PatientId == inQuery.PatientId)
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.WhereIf(inQuery.EarliestStudyTime != null, t => t.StudyTime >= inQuery.EarliestStudyTime)
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.WhereIf(inQuery.LatestStudyTime != null, t => t.StudyTime <= inQuery.LatestStudyTime)
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.WhereIf(!string.IsNullOrWhiteSpace(inQuery.Modalities), t => t.Modalities.Contains(inQuery.Modalities))
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select new PatientStudySimpleView()
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{
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Description = scpStudy.Description,
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CalledAE = scpStudy.CalledAE,
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CallingAE = scpStudy.CallingAE,
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InstanceCount = scpStudy.InstanceCount,
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Modalities = scpStudy.Modalities,
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PatientId = scpStudy.PatientId,
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SCPStudyId = scpStudy.Id,
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SeriesCount = scpStudy.SeriesCount,
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StudyTime = scpStudy.StudyTime,
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SubjectVisitId = scpStudy.SubjectVisitId,
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VisitName = scpStudy.SubjectVisit.VisitName,
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BlindName = scpStudy.SubjectVisit.BlindName
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};
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//var sortField = string.IsNullOrWhiteSpace(inQuery.SortField) ? nameof(PatientStudySimpleView.StudyTime) : inQuery.SortField;
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//var orderQuery = inQuery.Asc ? query.OrderBy(sortField) : query.OrderBy(sortField + " desc");
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//var list = await orderQuery.ToListAsync();
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var pageList = await query.ToPagedListAsync(inQuery.PageIndex, inQuery.PageSize, inQuery.SortField == string.Empty ? nameof(PatientStudySimpleView.StudyTime) : inQuery.SortField, inQuery.Asc);
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return pageList;
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}
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public async Task<List<string>> GetDicomCalledAEList(Guid trialId)
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{
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var list = await _scpStudyRepository.Where(t => t.TrialId == trialId).Select(t => t.CalledAE).Distinct().ToListAsync();
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return list;
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}
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public async Task<List<string>> GetDicomCallingAEList(Guid trialId)
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{
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var list = await _scpStudyRepository.Where(t => t.TrialId == trialId).Select(t => t.CallingAE).Distinct().ToListAsync();
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return list;
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}
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public async Task<List<string>> GetDicomModalityList(Guid trialId)
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{
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var list = await _scpStudyRepository.Where(t => t.TrialId == trialId).SelectMany(t => t.SeriesList).Select(t=>t.Modality).Distinct().ToListAsync();
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return list;
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}
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/// <summary>
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/// 影像访视上传 检查列表
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/// </summary>
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/// <param name="inQuery"></param>
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/// <returns></returns>
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[HttpPost]
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public async Task<PageOutput<VisitPatientStudyFilterView>> GetVisitPatientStudyFilterList(VisitPatientStudyFilterQuery inQuery)
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{
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var trialSiteId = _subjectRepository.Where(t => t.Id == inQuery.SubjectId).Select(t => t.TrialSiteId).FirstOrDefault();
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var query = from scpStudy in _scpStudyRepository
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//未绑定的患者，或者自己已绑定但是未绑定访视的
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.Where(t => t.Patient.SubjectId == null || (t.Patient.SubjectId == inQuery.SubjectId && t.SubjectVisitId == null))
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//中心
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.Where(t => t.TrialSiteId == trialSiteId)
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.WhereIf(inQuery.EarliestStudyTime != null, t => t.StudyTime >= inQuery.EarliestStudyTime)
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.WhereIf(inQuery.LatestStudyTime != null, t => t.StudyTime <= inQuery.LatestStudyTime)
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.WhereIf(!string.IsNullOrWhiteSpace(inQuery.Modalities), t => t.Modalities.Contains(inQuery.Modalities))
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.WhereIf(!string.IsNullOrWhiteSpace(inQuery.PatientInfo), t => t.PatientIdStr.Contains(inQuery.PatientInfo) || t.PatientName.Contains(inQuery.PatientInfo) || t.PatientSex.Contains(inQuery.PatientInfo))
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select new VisitPatientStudyFilterView()
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{
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Description = scpStudy.Description,
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CalledAE = scpStudy.CalledAE,
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CallingAE = scpStudy.CallingAE,
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InstanceCount = scpStudy.InstanceCount,
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Modalities = scpStudy.Modalities,
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PatientId = scpStudy.PatientId,
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SCPStudyId = scpStudy.Id,
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SeriesCount = scpStudy.SeriesCount,
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StudyTime = scpStudy.StudyTime,
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BodyPartExamined=scpStudy.BodyPartExamined,
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AccessionNumber=scpStudy.AccessionNumber,
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PatientBirthDate=scpStudy.PatientBirthDate,
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PatientAge = scpStudy.PatientAge,
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PatientIdStr = scpStudy.PatientIdStr,
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PatientName = scpStudy.PatientName,
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PatientSex = scpStudy.PatientSex,
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};
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var pageList = await query.ToPagedListAsync(inQuery.PageIndex, inQuery.PageSize, inQuery.SortField == string.Empty ? nameof(PatientStudySimpleView.StudyTime) : inQuery.SortField, inQuery.Asc);
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return pageList;
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}
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/// <summary>
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/// 提交 患者检查和访视的绑定
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/// </summary>
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/// <param name="inCommand"></param>
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/// <returns></returns>
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[HttpPost]
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[UnitOfWork]
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[TypeFilter(typeof(TrialResourceFilter), Arguments = new object[] { "AfterStopCannNotOpt" })]
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public async Task<IResponseOutput> SubmitVisitStudyBinding(SubmitVisitStudyBindingCommand inCommand)
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{
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var subjectId = inCommand.SubjectId;
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var subjectVisitId = inCommand.SubjectVisitId;
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var trialId = inCommand.TrialId;
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var @lock = _distributedLockProvider.CreateLock($"StudyCode");
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using (await @lock.AcquireAsync())
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{
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var dbStudyCodeIntMax = _repository.Where<DicomStudy>(s => s.TrialId == inCommand.TrialId).Select(t => t.Code).DefaultIfEmpty().Max();
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int currentNextCodeInt = dbStudyCodeIntMax + 1;
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foreach (var scpStudyId in inCommand.SCPStudyIdList)
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{
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var find = _scpStudyRepository.Where(t => t.Id == scpStudyId).Include(t => t.SeriesList).Include(t => t.InstanceList).FirstOrDefault();
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if (find != null)
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{
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var newStuty = _mapper.Map<DicomStudy>(find);
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await _repository.AddAsync(newStuty);
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newStuty.SeqId = Guid.Empty;
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newStuty.Code = currentNextCodeInt;
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newStuty.StudyCode = AppSettings.GetCodeStr(currentNextCodeInt, nameof(DicomStudy));
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newStuty.IsFromPACS = true;
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newStuty.TrialId = trialId;
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newStuty.SubjectId = subjectId;
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newStuty.SubjectVisitId = subjectVisitId;
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var newSeriesList = _mapper.Map<List<DicomSeries>>(find.SeriesList);
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foreach (var series in newSeriesList)
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{
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series.SeqId = Guid.Empty;
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series.TrialId = trialId;
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series.SubjectId = subjectId;
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series.SubjectVisitId = subjectVisitId;
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}
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await _repository.AddRangeAsync(newSeriesList);
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var newInstanceList = _mapper.Map<List<DicomInstance>>(find.InstanceList);
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foreach (var instance in newInstanceList)
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{
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instance.SeqId = Guid.Empty;
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instance.TrialId = trialId;
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instance.SubjectId = subjectId;
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instance.SubjectVisitId = subjectVisitId;
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}
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await _repository.AddRangeAsync(newInstanceList);
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}
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currentNextCodeInt++;
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}
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}
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await _repository.SaveChangesAsync();
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return ResponseOutput.Ok();
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}
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#endregion
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}
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}
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