997 lines
39 KiB
C#
997 lines
39 KiB
C#
using AutoMapper;
|
||
using ExcelDataReader;
|
||
using IRaCIS.Application.Interfaces;
|
||
using IRaCIS.Core.Application.BusinessFilter;
|
||
using IRaCIS.Core.Application.Contracts;
|
||
using IRaCIS.Core.Application.Contracts.Dicom;
|
||
using IRaCIS.Core.Application.Contracts.Dicom.DTO;
|
||
using IRaCIS.Core.Application.Filter;
|
||
using IRaCIS.Core.Application.Helper;
|
||
using IRaCIS.Core.Application.MassTransit.Command;
|
||
using IRaCIS.Core.Application.Service;
|
||
using IRaCIS.Core.Domain.Models;
|
||
using IRaCIS.Core.Domain.Share;
|
||
using IRaCIS.Core.Infra.EFCore;
|
||
using IRaCIS.Core.Infrastructure;
|
||
using IRaCIS.Core.Infrastructure.Extention;
|
||
using MassTransit.Mediator;
|
||
using Microsoft.AspNetCore.Authorization;
|
||
using Microsoft.AspNetCore.Hosting;
|
||
using Microsoft.AspNetCore.Http;
|
||
using Microsoft.AspNetCore.Mvc;
|
||
using Microsoft.AspNetCore.Mvc.Filters;
|
||
using Microsoft.AspNetCore.Mvc.ModelBinding;
|
||
using Microsoft.AspNetCore.SignalR;
|
||
using Microsoft.AspNetCore.StaticFiles;
|
||
using Microsoft.AspNetCore.WebUtilities;
|
||
using Microsoft.EntityFrameworkCore;
|
||
using Microsoft.Extensions.Localization;
|
||
using Microsoft.Extensions.Logging;
|
||
using Microsoft.Net.Http.Headers;
|
||
using MiniExcelLibs;
|
||
using Newtonsoft.Json;
|
||
using SharpCompress.Archives;
|
||
using System;
|
||
using System.Collections.Generic;
|
||
using System.ComponentModel.DataAnnotations;
|
||
using System.Data;
|
||
using System.IO;
|
||
using System.Linq;
|
||
using System.Text;
|
||
using System.Threading.Tasks;
|
||
using Path = System.IO.Path;
|
||
|
||
namespace IRaCIS.Core.API.Controllers
|
||
{
|
||
|
||
#region 上传基类封装
|
||
|
||
|
||
|
||
[AttributeUsage(AttributeTargets.Class | AttributeTargets.Method)]
|
||
public class DisableFormValueModelBindingAttribute : Attribute, IResourceFilter
|
||
{
|
||
public void OnResourceExecuting(ResourceExecutingContext context)
|
||
{
|
||
|
||
|
||
var factories = context.ValueProviderFactories;
|
||
//factories.RemoveType<FormValueProviderFactory>();
|
||
factories.RemoveType<FormFileValueProviderFactory>();
|
||
factories.RemoveType<JQueryFormValueProviderFactory>();
|
||
context.HttpContext.Request.EnableBuffering();
|
||
}
|
||
|
||
public void OnResourceExecuted(ResourceExecutedContext context)
|
||
{
|
||
}
|
||
}
|
||
|
||
|
||
[DisableFormValueModelBinding]
|
||
public abstract class UploadBaseController : ControllerBase
|
||
{
|
||
/// <summary> 流式上传 直接返回</summary>
|
||
[Route("SingleFileUpload")]
|
||
[ApiExplorerSettings(IgnoreApi = true)]
|
||
|
||
public virtual async Task<IResponseOutput> SingleFileUploadAsync(Func<string, (string, string)> filePathFunc)
|
||
{
|
||
var boundary = HeaderUtilities.RemoveQuotes(MediaTypeHeaderValue.Parse(Request.ContentType).Boundary).Value;
|
||
|
||
var reader = new MultipartReader(boundary, HttpContext.Request.Body);
|
||
|
||
var section = await reader.ReadNextSectionAsync();
|
||
|
||
while (section != null)
|
||
{
|
||
var hasContentDispositionHeader = ContentDispositionHeaderValue.TryParse(section.ContentDisposition, out var contentDisposition);
|
||
|
||
if (hasContentDispositionHeader)
|
||
{
|
||
|
||
var (serverFilePath, relativePath) = filePathFunc(contentDisposition.FileName.Value);
|
||
|
||
await FileStoreHelper.WriteFileAsync(section.Body, serverFilePath);
|
||
|
||
//仅仅返回一个文件，如果多文件上传 在最后返回多个路径
|
||
return ResponseOutput.Ok(new
|
||
{
|
||
FilePath = relativePath,
|
||
FullFilePath = relativePath /*+ "?access_token=" + _userInfo.UserToken*/
|
||
});
|
||
|
||
}
|
||
section = await reader.ReadNextSectionAsync();
|
||
}
|
||
return ResponseOutput.Ok();
|
||
}
|
||
|
||
|
||
/// <summary> 流式上传 通用封装 不返回任何数据，后续还有事情处理 </summary>
|
||
[Route("FileUpload")]
|
||
[ApiExplorerSettings(IgnoreApi = true)]
|
||
|
||
public virtual async Task FileUploadAsync(Func<string, Task<string>> filePathFunc)
|
||
{
|
||
var boundary = HeaderUtilities.RemoveQuotes(MediaTypeHeaderValue.Parse(Request.ContentType).Boundary).Value;
|
||
|
||
var reader = new MultipartReader(boundary, HttpContext.Request.Body);
|
||
|
||
var section = await reader.ReadNextSectionAsync();
|
||
|
||
while (section != null)
|
||
{
|
||
var hasContentDispositionHeader = ContentDispositionHeaderValue.TryParse(section.ContentDisposition, out var contentDisposition);
|
||
if (hasContentDispositionHeader)
|
||
{
|
||
var fileName = contentDisposition.FileName.Value;
|
||
//处理压缩文件
|
||
if (fileName.Contains(".Zip", StringComparison.OrdinalIgnoreCase) || fileName.Contains(".rar", StringComparison.OrdinalIgnoreCase))
|
||
{
|
||
var archive = ArchiveFactory.Open(section.Body);
|
||
|
||
foreach (var entry in archive.Entries)
|
||
{
|
||
if (!entry.IsDirectory)
|
||
{
|
||
var serverFilePath = await filePathFunc(entry.Key);
|
||
entry.WriteToFile(serverFilePath);
|
||
|
||
}
|
||
}
|
||
}
|
||
//普通单个文件
|
||
else
|
||
{
|
||
var serverFilePath = await filePathFunc(fileName);
|
||
|
||
await FileStoreHelper.WriteFileAsync(section.Body, serverFilePath);
|
||
}
|
||
|
||
}
|
||
section = await reader.ReadNextSectionAsync();
|
||
}
|
||
}
|
||
|
||
[Route("FileUploadToOSS")]
|
||
[ApiExplorerSettings(IgnoreApi = true)]
|
||
|
||
public virtual async Task FileUploadToOSSAsync(Func<string, Stream, Task<string>> toMemoryStreamFunc)
|
||
{
|
||
var boundary = HeaderUtilities.RemoveQuotes(MediaTypeHeaderValue.Parse(Request.ContentType).Boundary).Value;
|
||
|
||
var reader = new MultipartReader(boundary, HttpContext.Request.Body);
|
||
|
||
var section = await reader.ReadNextSectionAsync();
|
||
|
||
while (section != null)
|
||
{
|
||
var hasContentDispositionHeader = ContentDispositionHeaderValue.TryParse(section.ContentDisposition, out var contentDisposition);
|
||
if (hasContentDispositionHeader)
|
||
{
|
||
var fileName = contentDisposition.FileName.Value;
|
||
|
||
await toMemoryStreamFunc(fileName, section.Body);
|
||
|
||
}
|
||
|
||
section = await reader.ReadNextSectionAsync();
|
||
|
||
}
|
||
|
||
}
|
||
|
||
/// <summary> 流式上传 Dicom上传 </summary>
|
||
[Route("DicomFileUpload")]
|
||
[ApiExplorerSettings(IgnoreApi = true)]
|
||
|
||
public virtual async Task DicomFileUploadAsync(Func<string, Stream, int, Task> filePathFunc, string boundary)
|
||
{
|
||
|
||
var fileCount = 0;
|
||
|
||
var reader = new MultipartReader(boundary, HttpContext.Request.Body);
|
||
|
||
var section = await reader.ReadNextSectionAsync();
|
||
|
||
while (section != null)
|
||
{
|
||
var hasContentDispositionHeader = ContentDispositionHeaderValue.TryParse(section.ContentDisposition, out var contentDisposition);
|
||
|
||
if (hasContentDispositionHeader)
|
||
{
|
||
|
||
var fileName = contentDisposition.FileName.Value ?? String.Empty;
|
||
|
||
string mediaType = section.ContentType ?? String.Empty;
|
||
|
||
|
||
//处理压缩文件
|
||
if (fileName.Contains(".Zip", StringComparison.OrdinalIgnoreCase) || fileName.Contains(".rar", StringComparison.OrdinalIgnoreCase))
|
||
{
|
||
var archive = ArchiveFactory.Open(section.Body);
|
||
|
||
foreach (var entry in archive.Entries)
|
||
{
|
||
if (!entry.IsDirectory)
|
||
{
|
||
++fileCount;
|
||
|
||
await filePathFunc(entry.Key, entry.OpenEntryStream(), fileCount);
|
||
}
|
||
}
|
||
}
|
||
//普通单个文件
|
||
else
|
||
{
|
||
if (mediaType.Contains("octet-stream") || mediaType.Contains("dicom"))
|
||
{
|
||
++fileCount;
|
||
|
||
await filePathFunc(fileName, section.Body, fileCount);
|
||
}
|
||
|
||
}
|
||
}
|
||
section = await reader.ReadNextSectionAsync();
|
||
}
|
||
|
||
|
||
|
||
}
|
||
|
||
|
||
}
|
||
|
||
#endregion
|
||
|
||
#region Dicom 影像上传 临床数据 非diocm
|
||
public class UploadNoneDicomFileCommand
|
||
{
|
||
[NotDefault]
|
||
public Guid SubjectVisitId { get; set; }
|
||
|
||
|
||
[NotDefault]
|
||
public Guid StudyMonitorId { get; set; }
|
||
|
||
|
||
public Guid? NoneDicomStudyId { get; set; }
|
||
|
||
//IR 上传的时候跟任务绑定
|
||
public Guid? VisitTaskId { get; set; }
|
||
|
||
public string RecordPath { get; set; }
|
||
|
||
public int FailedFileCount { get; set; }
|
||
|
||
public long FileSize { get; set; }
|
||
|
||
|
||
public List<OSSFileDTO> UploadedFileList { get; set; } = new List<OSSFileDTO>();
|
||
|
||
|
||
public class OSSFileDTO
|
||
{
|
||
public string FilePath { get; set; }
|
||
public string FileName { get; set; }
|
||
public int FileFize { get; set; }
|
||
|
||
public string FileType { get; set; }
|
||
}
|
||
}
|
||
|
||
[ApiController, ApiExplorerSettings(GroupName = "Image")]
|
||
public class StudyController(
|
||
IMediator _mediator,
|
||
QCCommon _qCCommon,
|
||
IUserInfo _userInfo,
|
||
IRepository<SubjectVisit> _subjectVisitRepository,
|
||
IStringLocalizer _localizer) : UploadBaseController
|
||
{
|
||
|
||
|
||
|
||
/// <summary>Dicom 归档</summary>
|
||
[HttpPost, Route("Study/ArchiveStudy")]
|
||
[DisableFormValueModelBinding]
|
||
[DisableRequestSizeLimit]
|
||
[TrialGlobalLimit( "AfterStopCannNotOpt" )]
|
||
public async Task<IResponseOutput> ArchiveStudyNew(Guid trialId, Guid subjectVisitId, string studyInstanceUid, Guid? abandonStudyId, Guid studyMonitorId,
|
||
[FromServices] ILogger<UploadDownLoadController> _logger,
|
||
[FromServices] IStudyService _studyService,
|
||
[FromServices] IHubContext<UploadHub, IUploadClient> _uploadHub,
|
||
[FromServices] IDicomArchiveService _dicomArchiveService,
|
||
[FromServices] IRepository<StudyMonitor> _studyMonitorRepository
|
||
)
|
||
{
|
||
|
||
|
||
|
||
if (!HttpContext.Request.HasFormContentType ||
|
||
!MediaTypeHeaderValue.TryParse(HttpContext.Request.ContentType, out var mediaTypeHeader) ||
|
||
string.IsNullOrEmpty(mediaTypeHeader.Boundary.Value))
|
||
{
|
||
//---不支持的MediaType
|
||
return ResponseOutput.NotOk(_localizer["UploadDownLoad_UnsupportedMedia"]);
|
||
}
|
||
|
||
var archiveStudyCommand = new ArchiveStudyCommand() { AbandonStudyId = abandonStudyId, StudyInstanceUid = studyInstanceUid, SubjectVisitId = subjectVisitId };
|
||
|
||
string studycode = string.Empty;
|
||
|
||
var startTime = DateTime.Now;
|
||
|
||
|
||
|
||
//到了接口，代表上传结束了
|
||
|
||
var studyMonitor = await _studyMonitorRepository.FirstOrDefaultAsync(t => t.Id == studyMonitorId);
|
||
|
||
studyMonitor.UploadFinishedTime = DateTime.Now;
|
||
|
||
|
||
var (archiveResult, archivedStudyIds) = (new DicomArchiveResult(), new List<Guid>());
|
||
|
||
|
||
var (seriesInstanceUidList, sopInstanceUidList) = (new List<string>(), new List<string>());
|
||
|
||
//重传的时候，找出当前检查已经上传的series instance
|
||
if (archiveStudyCommand.AbandonStudyId != null)
|
||
{
|
||
(seriesInstanceUidList, sopInstanceUidList) = _studyService.GetHasUploadSeriesAndInstance(archiveStudyCommand.AbandonStudyId.Value);
|
||
}
|
||
|
||
var savedInfo = _studyService.GetSaveToDicomInfo(archiveStudyCommand.SubjectVisitId);
|
||
|
||
try
|
||
{
|
||
|
||
await DicomFileUploadAsync(async (fileName, fileStream, receivedCount) =>
|
||
{
|
||
|
||
try
|
||
{
|
||
using (var memoryStream = new MemoryStream())
|
||
{
|
||
await fileStream.CopyToAsync(memoryStream);
|
||
|
||
memoryStream.Seek(0, SeekOrigin.Begin);
|
||
|
||
var (studyId, studyCode) = await _dicomArchiveService.ArchiveDicomStreamAsync(memoryStream, savedInfo, seriesInstanceUidList, sopInstanceUidList);
|
||
if (!archivedStudyIds.Contains(studyId))
|
||
{
|
||
archivedStudyIds.Add(studyId);
|
||
archiveResult.ArchivedDicomStudies.Add(new DicomStudyBasicDTO() { StudyCode = studyCode, Id = studyId });
|
||
}
|
||
}
|
||
|
||
//await _uploadHub.Clients.All.ReceivProgressAsync(archiveStudyCommand.StudyInstanceUid, receivedCount);
|
||
|
||
|
||
await _uploadHub.Clients.User(_userInfo.UserRoleId.ToString()).ReceivProgressAsync(archiveStudyCommand.StudyInstanceUid, receivedCount);
|
||
|
||
archiveResult.ReceivedFileCount = receivedCount;
|
||
|
||
}
|
||
catch (Exception e)
|
||
{
|
||
_logger.LogError(e.Message + e.StackTrace);
|
||
|
||
archiveResult.ErrorFiles.Add(fileName);
|
||
}
|
||
|
||
|
||
}, mediaTypeHeader.Boundary.Value);
|
||
|
||
|
||
}
|
||
catch (Exception)
|
||
{
|
||
|
||
//---请求异常,请重试！
|
||
throw new BusinessValidationFailedException(_localizer["UploadDownLoad_RequestError"]);
|
||
}
|
||
|
||
studyMonitor.FileSize = (long)HttpContext.Request.ContentLength;
|
||
studyMonitor.FileCount = archiveResult.ReceivedFileCount;
|
||
studyMonitor.FailedFileCount = archiveResult.ErrorFiles.Count;
|
||
studyMonitor.IsDicomReUpload = archiveStudyCommand.AbandonStudyId != null;
|
||
studyMonitor.Note = JsonConvert.SerializeObject(archiveResult);
|
||
|
||
|
||
try
|
||
{
|
||
|
||
if (archivedStudyIds.Count > 0) // 上传成功，处理逻辑
|
||
{
|
||
|
||
// 同一个访视 多个线程上传处理 批量保存 可能造成死锁 https://www.cnblogs.com/johnblogs/p/9945767.html
|
||
|
||
await _dicomArchiveService.DicomDBDataSaveChange();
|
||
|
||
archiveResult.ReuploadNewStudyId = archivedStudyIds[0] == archiveStudyCommand.AbandonStudyId ? archivedStudyIds[0] : Guid.Empty;
|
||
|
||
studyMonitor.IsSuccess = true;
|
||
|
||
}
|
||
|
||
}
|
||
catch (Exception e)
|
||
{
|
||
|
||
studyMonitor.Note = JsonConvert.SerializeObject(new { Message = e.Message, Result = archiveResult });
|
||
_logger.LogError(e.Message + e.StackTrace);
|
||
|
||
}
|
||
finally
|
||
{
|
||
|
||
studyMonitor.StudyId = archiveResult.ArchivedDicomStudies.FirstOrDefault()?.Id ?? Guid.Empty;
|
||
studyMonitor.StudyCode = archiveResult.ArchivedDicomStudies.FirstOrDefault()?.StudyCode;
|
||
studyMonitor.ArchiveFinishedTime = DateTime.Now;
|
||
|
||
await _studyMonitorRepository.SaveChangesAsync();
|
||
}
|
||
|
||
|
||
|
||
return ResponseOutput.Result(studyMonitor.IsSuccess, archiveResult);
|
||
|
||
|
||
|
||
}
|
||
|
||
|
||
/// <summary>
|
||
/// 非dicom 上传预上传接口
|
||
/// </summary>
|
||
/// <param name="preArchiveStudyCommand"></param>
|
||
/// <param name="_studyService"></param>
|
||
/// <param name="_studyMonitorRepository"></param>
|
||
/// <returns></returns>
|
||
[HttpPost, Route("Study/PreArchiveStudy")]
|
||
[TrialGlobalLimit( "AfterStopCannNotOpt" )]
|
||
public async Task<IResponseOutput> PreArchiveStudy(PreArchiveStudyCommand preArchiveStudyCommand,
|
||
[FromServices] IStudyService _studyService,
|
||
[FromServices] IRepository<StudyMonitor> _studyMonitorRepository)
|
||
{
|
||
|
||
var savedInfo = _studyService.GetSaveToDicomInfo(preArchiveStudyCommand.SubjectVisitId);
|
||
|
||
var studyMonitor = new StudyMonitor()
|
||
{
|
||
TrialId = savedInfo.TrialId,
|
||
SubjectId = savedInfo.SubjectId,
|
||
SubjectVisitId = savedInfo.SubjectVisitId,
|
||
|
||
IsSuccess = false,
|
||
UploadStartTime = DateTime.Now,
|
||
FileCount = preArchiveStudyCommand.FileCount,
|
||
IsDicom = preArchiveStudyCommand.IsDicom,
|
||
IP = _userInfo.IP
|
||
};
|
||
|
||
|
||
var addEntity = await _studyMonitorRepository.AddAsync(studyMonitor, true);
|
||
|
||
return ResponseOutput.Ok(addEntity.Id);
|
||
|
||
}
|
||
/// <summary>
|
||
/// 上传非Dicom 文件 支持压缩包 多文件上传
|
||
/// </summary>
|
||
/// <param name="incommand"></param>
|
||
/// <param name="_noneDicomStudyRepository"></param>
|
||
/// <param name="_studyMonitorRepository"></param>
|
||
/// <param name="_noneDicomStudyFileRepository"></param>
|
||
/// <returns></returns>
|
||
[HttpPost("NoneDicomStudy/UploadNoneDicomFile")]
|
||
[TrialGlobalLimit( "AfterStopCannNotOpt" )]
|
||
public async Task<IResponseOutput> UploadNoneDicomFile(UploadNoneDicomFileCommand incommand,
|
||
[FromServices] IRepository<NoneDicomStudy> _noneDicomStudyRepository,
|
||
[FromServices] IRepository<StudyMonitor> _studyMonitorRepository,
|
||
[FromServices] IRepository<NoneDicomStudyFile> _noneDicomStudyFileRepository)
|
||
{
|
||
|
||
var subjectVisitId = incommand.SubjectVisitId;
|
||
var studyMonitorId = incommand.StudyMonitorId;
|
||
var noneDicomStudyId = incommand.NoneDicomStudyId;
|
||
|
||
|
||
await _qCCommon.VerifyIsCRCSubmmitAsync(_subjectVisitRepository, _userInfo, subjectVisitId);
|
||
|
||
var sv = (await _subjectVisitRepository.Where(t => t.Id == subjectVisitId).Select(t => new { t.TrialId, t.TrialSiteId, t.SubjectId }).FirstOrDefaultAsync()).IfNullThrowConvertException();
|
||
|
||
var studyMonitor = await _studyMonitorRepository.FirstOrDefaultAsync(t => t.Id == studyMonitorId);
|
||
|
||
studyMonitor.UploadFinishedTime = DateTime.Now;
|
||
|
||
foreach (var item in incommand.UploadedFileList)
|
||
{
|
||
//如果是跟任务绑，那么NoneDicomStudyId 设置为空，不影响之前的检查，同时设置 OriginNoneDicomStudyId 保证关系
|
||
|
||
if (incommand.VisitTaskId != null && incommand.VisitTaskId != Guid.Empty)
|
||
{
|
||
await _noneDicomStudyFileRepository.AddAsync(new NoneDicomStudyFile() { FileName = item.FileName, Path = item.FilePath, OriginNoneDicomStudyId = noneDicomStudyId.Value, VisitTaskId = incommand.VisitTaskId, FileType = item.FileType, FileSize = item.FileFize });
|
||
|
||
}
|
||
else
|
||
{
|
||
await _noneDicomStudyFileRepository.AddAsync(new NoneDicomStudyFile() { FileName = item.FileName, Path = item.FilePath, NoneDicomStudyId = noneDicomStudyId.Value, FileType = item.FileType, FileSize = item.FileFize });
|
||
|
||
}
|
||
|
||
|
||
}
|
||
var uploadFinishedTime = DateTime.Now;
|
||
|
||
var noneDicomStudy = await _noneDicomStudyRepository.FirstOrDefaultAsync((t => t.Id == noneDicomStudyId));
|
||
|
||
noneDicomStudy.FileCount = noneDicomStudy.FileCount + (incommand.VisitTaskId != null ? 0 : incommand.UploadedFileList.Count);
|
||
|
||
studyMonitor.RecordPath = incommand.RecordPath;
|
||
studyMonitor.FailedFileCount = incommand.FailedFileCount;
|
||
studyMonitor.IsSuccess = incommand.FailedFileCount == 0;
|
||
studyMonitor.FileSize = incommand.UploadedFileList.Sum(t => t.FileFize);
|
||
studyMonitor.IsDicom = false;
|
||
studyMonitor.IsDicomReUpload = false;
|
||
studyMonitor.StudyId = noneDicomStudyId.Value;
|
||
studyMonitor.StudyCode = noneDicomStudy.StudyCode;
|
||
studyMonitor.ArchiveFinishedTime = DateTime.Now;
|
||
studyMonitor.IP = _userInfo.IP;
|
||
|
||
await _noneDicomStudyRepository.SaveChangesAsync();
|
||
|
||
return ResponseOutput.Ok();
|
||
}
|
||
|
||
|
||
|
||
|
||
|
||
/// <summary>
|
||
/// 一致性核查 excel上传 支持三种格式
|
||
/// </summary>
|
||
/// <param name="trialId"></param>
|
||
/// <param name="oSSService"></param>
|
||
/// <param name="_inspectionFileRepository"></param>
|
||
/// <returns></returns>
|
||
/// <exception cref="BusinessValidationFailedException"></exception>
|
||
[HttpPost("QCOperation/UploadVisitCheckExcel/{trialId:guid}")]
|
||
[TrialGlobalLimit( "AfterStopCannNotOpt" )]
|
||
|
||
public async Task<IResponseOutput> UploadVisitCheckExcel(Guid trialId, [FromServices] IOSSService oSSService, [FromServices] IRepository<InspectionFile> _inspectionFileRepository)
|
||
{
|
||
|
||
var fileName = string.Empty;
|
||
var templateFileStream = new MemoryStream();
|
||
|
||
await FileUploadToOSSAsync(async (realFileName, fileStream) =>
|
||
{
|
||
fileName = realFileName;
|
||
|
||
if (!fileName.EndsWith(".xlsx") && !fileName.EndsWith(".xls"))
|
||
{
|
||
//---支持.xlsx、.xls格式的文件上传。
|
||
throw new BusinessValidationFailedException(_localizer["UploadDownLoad_SupportedFormats"]);
|
||
}
|
||
|
||
fileStream.CopyTo(templateFileStream);
|
||
templateFileStream.Seek(0, SeekOrigin.Begin);
|
||
|
||
|
||
var ossRelativePath = await oSSService.UploadToOSSAsync(fileStream, "InspectionUpload/Check", realFileName);
|
||
|
||
await _inspectionFileRepository.AddAsync(new InspectionFile() { FileName = realFileName, RelativePath = ossRelativePath, TrialId = trialId });
|
||
|
||
return ossRelativePath;
|
||
|
||
});
|
||
|
||
|
||
|
||
|
||
var etcCheckList = new List<CheckViewModel>();
|
||
|
||
|
||
#region MiniExcel 需要自己验证数据格式规范
|
||
|
||
|
||
if (fileName.EndsWith(".xlsx"))
|
||
{
|
||
etcCheckList = MiniExcel.Query<CheckViewModel>(templateFileStream, excelType: ExcelType.XLSX).ToList();
|
||
}
|
||
else if (fileName.EndsWith(".csv"))
|
||
{
|
||
//因为csv 需要加配置文件 不然都是null
|
||
etcCheckList = MiniExcel.Query<CheckViewModel>(templateFileStream, null, configuration: new MiniExcelLibs.Csv.CsvConfiguration()
|
||
{
|
||
StreamReaderFunc = (stream) => new StreamReader(stream, Encoding.GetEncoding("gb2312"))
|
||
}).ToList();
|
||
|
||
}
|
||
//if (fileName.EndsWith(".csv"))
|
||
//{
|
||
// //因为csv 需要加配置文件 不然都是null
|
||
// etcCheckList = MiniExcel.Query<CheckViewModel>(filePath, null, configuration: config).ToList();
|
||
//}
|
||
//else if (fileName.EndsWith(".xlsx"))
|
||
//{
|
||
//
|
||
|
||
|
||
// etcCheckList = MiniExcel.Query<CheckViewModel>(filePath).ToList();
|
||
//}
|
||
|
||
#endregion
|
||
|
||
#region 升级net8 导入有问题
|
||
|
||
|
||
//Magicodes 支持自定义特性验证
|
||
// if (fileName.EndsWith(".xlsx"))
|
||
//{
|
||
// var Importer = new ExcelImporter();
|
||
|
||
// var import = await Importer.Import<CheckViewModel>(templateFileStream);
|
||
|
||
// if (import.Exception != null) return ResponseOutput.NotOk(import.Exception.ToString());
|
||
|
||
// //if (import.RowErrors.Count > 0) return ResponseOutput.NotOk(JsonConvert.SerializeObject(import.RowErrors));
|
||
|
||
// if (import.TemplateErrors.Count > 0) return ResponseOutput.NotOk(_localizer["UploadDownLoad_TemplateErrors"]);
|
||
|
||
// etcCheckList = import.Data.ToList();
|
||
//}
|
||
//else if (fileName.EndsWith(".csv"))
|
||
//{
|
||
// #region 临时方案 MiniExcel读取 然后保存为xlsx 再用 Magicodes验证数据
|
||
|
||
// //因为csv 需要加配置文件 不然都是null
|
||
// etcCheckList = MiniExcel.Query<CheckViewModel>(templateFileStream, null, configuration: new MiniExcelLibs.Csv.CsvConfiguration()
|
||
// {
|
||
// StreamReaderFunc = (stream) => new StreamReader(stream, Encoding.GetEncoding("gb2312"))
|
||
// }).ToList();
|
||
|
||
// var (csVToXlsxPath, csVToXlsxRelativePath) = FileStoreHelper.GetTrialCheckFilePath(_hostEnvironment, Path.GetFileNameWithoutExtension(fileName) + ".xlsx", trialId);
|
||
|
||
|
||
// await MiniExcel.SaveAsAsync(csVToXlsxPath, etcCheckList, excelType: ExcelType.XLSX);
|
||
|
||
|
||
// var Importer = new ExcelImporter();
|
||
|
||
// var import = await Importer.Import<CheckViewModel>(System.IO.File.OpenRead(csVToXlsxPath));
|
||
|
||
// if (import.Exception != null) return ResponseOutput.NotOk(import.Exception.ToString());
|
||
|
||
// //if (import.RowErrors.Count > 0) return ResponseOutput.NotOk(JsonConvert.SerializeObject(import.RowErrors));
|
||
|
||
// if (import.TemplateErrors.Count > 0) return ResponseOutput.NotOk(JsonConvert.SerializeObject(import.TemplateErrors));
|
||
|
||
// etcCheckList = import.Data.ToList();
|
||
|
||
// #endregion
|
||
|
||
|
||
// #region 导入组件有问题 excel编码格式
|
||
// //var Importer = new CsvImporter();
|
||
|
||
// //var import = await Importer.Import<CheckViewModel>(File.OpenRead(filePath));
|
||
|
||
// //if (import.Exception != null) return ResponseOutput.NotOk(import.Exception.ToString());
|
||
|
||
// //if (import.RowErrors.Count > 0) return ResponseOutput.NotOk(JsonConvert.SerializeObject(import.RowErrors));
|
||
|
||
// //if (import.TemplateErrors.Count > 0) return ResponseOutput.NotOk(JsonConvert.SerializeObject(import.TemplateErrors));
|
||
|
||
// //etcCheckList = import.Data.ToList();
|
||
// #endregion
|
||
|
||
//}
|
||
|
||
#endregion
|
||
//ExcelReaderFactory 需要自己验证数据 并且从固定列取数据
|
||
else
|
||
{
|
||
//为了支持 xls 引入新的组件库
|
||
//using (var stream = System.IO.File.Open(templateFileStream, FileMode.Open, FileAccess.Read))
|
||
//{
|
||
// Auto-detect format, supports:
|
||
// - Binary Excel files (2.0-2003 format; *.xls)
|
||
// - OpenXml Excel files (2007 format; *.xlsx, *.xlsb)
|
||
using (var reader = ExcelReaderFactory.CreateReader(templateFileStream))
|
||
{
|
||
|
||
// 2. Use the AsDataSet extension method
|
||
var dateset = reader.AsDataSet();
|
||
|
||
foreach (DataRow col in dateset.Tables[0].Rows)
|
||
{
|
||
|
||
etcCheckList.Add(new CheckViewModel()
|
||
{
|
||
SiteCode = col[0].ToString(),
|
||
SubjectCode = col[1].ToString(),
|
||
VisitName = col[2].ToString(),
|
||
StudyDate = col[3].ToString(),
|
||
Modality = col[4].ToString(),
|
||
});
|
||
}
|
||
|
||
etcCheckList.Remove(etcCheckList[0]);
|
||
|
||
// The result of each spreadsheet is in result.Tables
|
||
}
|
||
|
||
}
|
||
|
||
if (etcCheckList == null || etcCheckList.Count == 0)
|
||
{
|
||
//---请保证上传数据符合模板文件中的样式，且存在有效数据。
|
||
return ResponseOutput.NotOk(_localizer["UploadDownLoad_InvalidData"]);
|
||
}
|
||
else
|
||
{
|
||
//处理Excel 有时只是清除某些行的数据 读取也会读到数据，只是数据是null 后面处理的时候转为字符串为报错
|
||
etcCheckList.ForEach(t =>
|
||
{
|
||
t.Modality = t.Modality ?? string.Empty;
|
||
t.SiteCode = t.SiteCode ?? string.Empty;
|
||
t.SubjectCode = t.SubjectCode ?? string.Empty;
|
||
t.VisitName = t.VisitName ?? string.Empty;
|
||
t.StudyDate = t.StudyDate ?? string.Empty;
|
||
});
|
||
|
||
var dt = DateTime.Now;
|
||
|
||
etcCheckList = etcCheckList.Where(t => !(t.Modality == string.Empty || t.SiteCode == string.Empty || t.SubjectCode == string.Empty || t.VisitName == string.Empty || t.StudyDate == string.Empty || !DateTime.TryParse(t.StudyDate, out dt))).ToList();
|
||
|
||
if (etcCheckList.Count == 0)
|
||
{
|
||
//---请保证上传数据符合模板文件中的样式，且存在有效数据。
|
||
return ResponseOutput.NotOk(_localizer["UploadDownLoad_InvalidData"]);
|
||
}
|
||
}
|
||
|
||
|
||
|
||
// 适合获取结果的
|
||
//var client = _mediator.CreateRequestClient<ConsistenCheckCommand>();
|
||
//await client.GetResponse<ConsistenCheckResult>(new ConsistenCheckCommand() { ETCList = etcCheckList, TrialId = trialId });
|
||
|
||
//不获取结果，不用定义返回类型
|
||
await _mediator.Send(new ConsistenCheckCommand() { ETCList = etcCheckList, TrialId = trialId });
|
||
|
||
return ResponseOutput.Ok();
|
||
|
||
}
|
||
}
|
||
|
||
|
||
#endregion
|
||
|
||
|
||
|
||
|
||
#region 项目 系统 基本文件 上传 下载 预览
|
||
|
||
[ApiController, ApiExplorerSettings(GroupName = "Common")]
|
||
|
||
public class UploadDownLoadController : UploadBaseController
|
||
{
|
||
public IMapper _mapper { get; set; }
|
||
public IUserInfo _userInfo { get; set; }
|
||
private readonly IMediator _mediator;
|
||
public IStringLocalizer _localizer { get; set; }
|
||
private readonly IWebHostEnvironment _hostEnvironment;
|
||
|
||
public UploadDownLoadController(IMapper mapper, IUserInfo userInfo, IStringLocalizer localizer, IMediator mediator, IWebHostEnvironment hostEnvironment)
|
||
{
|
||
_hostEnvironment = hostEnvironment;
|
||
_localizer = localizer;
|
||
_mediator = mediator;
|
||
_mapper = mapper;
|
||
_userInfo = userInfo;
|
||
}
|
||
|
||
[HttpPost, Route("TrialSiteSurvey/UploadTrialSiteSurveyUser")]
|
||
[DisableFormValueModelBinding]
|
||
[UnitOfWork]
|
||
public async Task<IResponseOutput> UploadTrialSiteSurveyUser(Guid trialId, string baseUrl, string routeUrl,
|
||
[FromServices] IRepository<TrialSite> _trialSiteRepository,
|
||
[FromServices] IRepository<UserType> _usertypeRepository,
|
||
[FromServices] ITrialSiteSurveyService _trialSiteSurveyService,
|
||
[FromServices] IOSSService oSSService,
|
||
[FromServices] IRepository<InspectionFile> _inspectionFileRepository)
|
||
{
|
||
var templateFileStream = new MemoryStream();
|
||
|
||
|
||
await FileUploadToOSSAsync(async (realFileName, fileStream) =>
|
||
{
|
||
await fileStream.CopyToAsync(templateFileStream);
|
||
templateFileStream.Seek(0, SeekOrigin.Begin);
|
||
|
||
if (!realFileName.EndsWith(".xlsx", StringComparison.OrdinalIgnoreCase))
|
||
{
|
||
// 请用提供格式的模板excel上传需要处理的数据
|
||
throw new BusinessValidationFailedException(_localizer["UploadDownLoad_TemplateUploadData"]);
|
||
}
|
||
|
||
var ossRelativePath = await oSSService.UploadToOSSAsync(fileStream, "InspectionUpload/SiteSurvey", realFileName);
|
||
|
||
await _inspectionFileRepository.AddAsync(new InspectionFile() { FileName = realFileName, RelativePath = ossRelativePath, TrialId = trialId });
|
||
|
||
|
||
|
||
return ossRelativePath;
|
||
|
||
});
|
||
|
||
//去掉空白行
|
||
var excelList = MiniExcel.Query<SiteSurveyUserImportDto>(templateFileStream, excelType: ExcelType.XLSX).ToList()
|
||
.Where(t => !(string.IsNullOrWhiteSpace(t.TrialSiteCode) && string.IsNullOrWhiteSpace(t.FirstName) && string.IsNullOrWhiteSpace(t.LastName) && string.IsNullOrWhiteSpace(t.Email)
|
||
&& string.IsNullOrWhiteSpace(t.Phone) && string.IsNullOrWhiteSpace(t.UserTypeStr) && string.IsNullOrWhiteSpace(t.OrganizationName))).ToList();
|
||
|
||
if (excelList.Any(t => string.IsNullOrWhiteSpace(t.TrialSiteCode) || string.IsNullOrWhiteSpace(t.FirstName) || string.IsNullOrWhiteSpace(t.LastName) || string.IsNullOrWhiteSpace(t.Email) || string.IsNullOrWhiteSpace(t.UserTypeStr)))
|
||
{
|
||
//请确保Excel中 每一行的 中心编号，姓名，邮箱，用户类型数据记录完整再进行上传
|
||
throw new BusinessValidationFailedException(_localizer["UploadDownLoad_EnsureCompleteData"]);
|
||
}
|
||
|
||
var siteCodeList = excelList.Select(t => t.TrialSiteCode.Trim().ToUpper()).Distinct().ToList();
|
||
|
||
if (_trialSiteRepository.Where(t => t.TrialId == trialId && siteCodeList.Contains(t.TrialSiteCode.ToUpper())).Count() != siteCodeList.Count)
|
||
{
|
||
//在项目中未找到该Excel中部分或全部中心
|
||
throw new BusinessValidationFailedException(_localizer["UploadDownLoad_InvalidCenters"]);
|
||
}
|
||
|
||
if (excelList.GroupBy(t => new { t.TrialSiteCode, t.UserTypeStr, t.Email }).Any(g => g.Count() > 1))
|
||
{
|
||
// 同一邮箱，同一用户类型，只能生成一个账户,请核查Excel数据
|
||
|
||
throw new BusinessValidationFailedException(_localizer["UploadDownLoad_CheckDuplicateAccounts"]);
|
||
}
|
||
|
||
if (excelList.Any(t => !t.Email.Contains("@")))
|
||
{
|
||
//有邮箱不符合邮箱格式,请核查Excel数据
|
||
throw new BusinessValidationFailedException(_localizer["UploadDownLoad_InvalidEmail"]);
|
||
}
|
||
var generateUserTypeList = new List<string>() { "CRC", "CRA" };
|
||
|
||
//if (excelList.Any(t => !generateUserTypeList.Contains(t.UserTypeStr.ToUpper())))
|
||
//{
|
||
// //用户类型仅能为 CRC,SR,CRA 请核查Excel数据
|
||
// throw new BusinessValidationFailedException(_localizer["UploadDownLoad_InvalidUserType"]);
|
||
//}
|
||
if (excelList.Count == 0)
|
||
{
|
||
throw new BusinessValidationFailedException(_localizer["UploadDownLoad_NoValiddata"]);
|
||
}
|
||
//处理好 用户类型 和用户类型枚举
|
||
var sysUserTypeList = _usertypeRepository.Where(t => t.UserTypeEnum == UserTypeEnum.CRA || t.UserTypeEnum == UserTypeEnum.ClinicalResearchCoordinator).Select(t => new { UserTypeId = t.Id, t.UserTypeEnum }).ToList();
|
||
var siteList = _trialSiteRepository.Where(t => t.TrialId == trialId && siteCodeList.Contains(t.TrialSiteCode)).Select(t => new { t.TrialSiteCode, TrialSiteId = t.Id }).ToList();
|
||
|
||
foreach (var item in excelList)
|
||
{
|
||
switch (item.UserTypeStr.ToUpper())
|
||
{
|
||
case "CRC":
|
||
|
||
item.UserTypeId = sysUserTypeList.FirstOrDefault(t => t.UserTypeEnum == UserTypeEnum.ClinicalResearchCoordinator).UserTypeId;
|
||
item.UserTypeEnum = UserTypeEnum.ClinicalResearchCoordinator;
|
||
break;
|
||
|
||
case "CRA":
|
||
item.UserTypeId = sysUserTypeList.FirstOrDefault(t => t.UserTypeEnum == UserTypeEnum.CRA).UserTypeId;
|
||
item.UserTypeEnum = UserTypeEnum.CRA;
|
||
break;
|
||
|
||
|
||
|
||
}
|
||
|
||
item.TrialSiteId = siteList.FirstOrDefault(t => t.TrialSiteCode.ToUpper() == item.TrialSiteCode.ToUpper()).TrialSiteId;
|
||
}
|
||
|
||
var list = excelList.Where(t => t.UserTypeEnum == UserTypeEnum.ClinicalResearchCoordinator || t.UserTypeEnum == UserTypeEnum.CRA).ToList();
|
||
|
||
await _trialSiteSurveyService.ImportGenerateAccountAndJoinTrialAsync(trialId, baseUrl, routeUrl, list);
|
||
|
||
return ResponseOutput.Ok();
|
||
|
||
|
||
}
|
||
|
||
|
||
/// <summary> 通用文件下载 </summary>
|
||
[AllowAnonymous]
|
||
[HttpGet("CommonDocument/DownloadCommonDoc")]
|
||
public async Task<IActionResult> DownloadCommonFile(string code, [FromServices] IRepository<CommonDocument> _commonDocumentRepository)
|
||
{
|
||
var (filePath, fileName) = await FileStoreHelper.GetCommonDocPhysicalFilePathAsync(_hostEnvironment, _commonDocumentRepository, code);
|
||
|
||
new FileExtensionContentTypeProvider().Mappings.TryGetValue(Path.GetExtension(filePath), out var contentType);
|
||
|
||
return File(System.IO.File.OpenRead(filePath), contentType ?? "application/octet-stream", fileName);
|
||
|
||
}
|
||
|
||
/// <summary>
|
||
/// 上传通用文档 比如一致性核查的 比如导出的excel 模板
|
||
/// </summary>
|
||
/// <returns></returns>
|
||
[HttpPost("CommonDocument/UploadCommonDoc")]
|
||
[DisableRequestSizeLimit]
|
||
[DisableFormValueModelBinding]
|
||
public async Task<IResponseOutput> UploadCommonDoc()
|
||
{
|
||
|
||
return await SingleFileUploadAsync((fileName) => FileStoreHelper.GetCommonDocPath(_hostEnvironment, fileName));
|
||
}
|
||
|
||
|
||
|
||
public enum UploadFileType
|
||
{
|
||
DataUpload = 1,
|
||
|
||
DataDownload = 2,
|
||
|
||
EmailAttachment = 3,
|
||
|
||
EmailBodyHtml = 4,
|
||
|
||
Other = 5
|
||
}
|
||
|
||
/// <summary>
|
||
/// 1：数据上传 2：导出、 3：邮件附件 4：邮件Html 通过 ----new
|
||
/// </summary>
|
||
/// <returns></returns>
|
||
[HttpPost("SystemFile/Upload")]
|
||
[DisableRequestSizeLimit]
|
||
[DisableFormValueModelBinding]
|
||
public async Task<IResponseOutput> Upload(UploadFileType fileType)
|
||
{
|
||
IResponseOutput result = null;
|
||
|
||
switch (fileType)
|
||
{
|
||
case UploadFileType.DataUpload:
|
||
result = await SingleFileUploadAsync((fileName) => FileStoreHelper.GetSystemFileUploadPath(_hostEnvironment, StaticData.Folder.DataTemplate, fileName));
|
||
|
||
break;
|
||
case UploadFileType.DataDownload:
|
||
result = await SingleFileUploadAsync((fileName) => FileStoreHelper.GetSystemFileUploadPath(_hostEnvironment, StaticData.Folder.DataTemplate, fileName));
|
||
|
||
break;
|
||
case UploadFileType.EmailAttachment:
|
||
result = await SingleFileUploadAsync((fileName) => FileStoreHelper.GetSystemFileUploadPath(_hostEnvironment, StaticData.Folder.EmailTemplate, fileName));
|
||
|
||
break;
|
||
|
||
case UploadFileType.EmailBodyHtml:
|
||
result = await SingleFileUploadAsync((fileName) => FileStoreHelper.GetSystemFileUploadPath(_hostEnvironment, StaticData.Folder.EmailTemplate, fileName));
|
||
break;
|
||
|
||
default:
|
||
result = await SingleFileUploadAsync((fileName) => FileStoreHelper.GetOtherFileUploadPath(_hostEnvironment, StaticData.Folder.TempFile, fileName));
|
||
|
||
break;
|
||
}
|
||
|
||
return result;
|
||
|
||
}
|
||
|
||
}
|
||
#endregion
|
||
|
||
}
|