irc-netcore-api/IRaCIS.Core.Application/Service/ReadingCalculate/General/GeneralCalculateService.cs

488 lines
23 KiB
C#

using IRaCIS.Core.Application.Helper;
using IRaCIS.Core.Application.Service.Reading.Dto;
using IRaCIS.Core.Domain.Models;
using IRaCIS.Core.Domain.Share;
using IRaCIS.Core.Infra.EFCore.Common;
using MassTransit;
using Microsoft.AspNetCore.Http;
using Microsoft.Extensions.Logging;
using MiniExcelLibs;
using System.Data;
using System.IO;
using System.Text;
namespace IRaCIS.Core.Application.Service.ReadingCalculate
{
public class GeneralCalculateService(IRepository<ReadingTableQuestionAnswer> _readingTableQuestionAnswerRepository,
IRepository<VisitTask> _visitTaskRepository,
IRepository<ReadingQuestionCriterionTrial> _readingQuestionCriterionTrialRepository,
ILogger<GeneralCalculateService> _logger,
IRepository<ReadingTableQuestionTrial> _readingTableQuestionTrialRepository,
IRepository<ReadingTableAnswerRowInfo> _readingTableAnswerRowInfoRepository,
IRepository<ReadingQuestionTrial> _readingQuestionTrialRepository,
IRepository<SubjectVisit> _subjectVisitRepository,
IRepository<TumorAssessment_RECIST1Point1> _tumorAssessmentRepository,
IRepository<ReadingTaskQuestionAnswer> _readingTaskQuestionAnswerRepository,
IRepository<InspectionFile> _inspectionFileRepository,
IOSSService oSSService, IMapper _mapper, IUserInfo _userInfo, IStringLocalizer _localizer) : BaseService, IGeneralCalculateService
{
/// <summary>
/// 从上传文件中获取Datatable
/// </summary>
/// <returns></returns>
public async Task<FileToDataTableDto> GetDataTableFromUpload(IFormFile file,string pathCode,Guid trialId)
{
FileToDataTableDto result=new FileToDataTableDto ();
result.DataTable = new DataTable();
var fileFolder = "Upload\\";
if (!Directory.Exists(fileFolder))
{
Directory.CreateDirectory(fileFolder);
}
var fileName = DateTime.Now.ToString("yyyyMMddHHmmss") +
Path.GetExtension(file.FileName);
var filePath = Path.Combine(fileFolder, fileName);
var fileStream = new MemoryStream();
try
{
using (var stream = new FileStream(filePath, FileMode.Create))
{
file.CopyTo(stream);
await stream.CopyToAsync(fileStream);
result.SheetNames= stream.GetSheetNames();
stream.Position = 0;
result.DataTable = stream.QueryAsDataTable(useHeaderRow: false);
}
}
catch (Exception)
{
File.Delete(filePath);
}
try
{
var ossRelativePath = await oSSService.UploadToOSSAsync(fileStream, "InspectionUpload/"+ pathCode, file.FileName);
await _inspectionFileRepository.AddAsync(new InspectionFile() { FileName = file.FileName, RelativePath = ossRelativePath, TrialId = trialId });
}
catch (Exception)
{
}
File.Delete(filePath);
// 创建一个要删除的行集合
var rowsToRemove = new System.Collections.Generic.List<DataRow>();
// 遍历DataTable的每一行
foreach (DataRow row in result.DataTable.Rows)
{
bool allEmpty = true;
// 遍历每一列,检查值
foreach (var item in row.ItemArray)
{
if (item!=null&&!item.ToString().IsNullOrEmpty())
{
allEmpty = false;
break; // 只要有一个不为空,跳出循环
}
}
// 如果所有列都是空字符串,则添加到待删除的行集合中
if (allEmpty)
{
rowsToRemove.Add(row);
}
}
// 移除标记为待删除的行
foreach (var row in rowsToRemove)
{
result.DataTable.Rows.Remove(row);
}
return result;
}
/// <summary>
/// 添加计算错误日志
/// </summary>
/// <param name="inDto"></param>
/// <param name="lesionName"></param>
/// <param name="lesionType"></param>
/// <returns></returns>
public async Task LogRecord(ReadingCalculateDto inDto, string lesionName, LesionType lesionType)
{
// 这里是记录日志 不需要国际化
var criterionInfo = await _readingQuestionCriterionTrialRepository.Where(x => x.Id == inDto.TrialReadingCriterionId).Include(x => x.Trial).FirstNotNullAsync();
var taskInfo = await _visitTaskRepository.Where(x => x.Id == inDto.VisitTaskId).Include(x => x.Subject).Include(x => x.DoctorUser).FirstNotNullAsync();
//错误级别日志:项目、标准、受试者、阅片人、任务。输出其它既往新病灶数据:
StringBuilder builder = new StringBuilder();
builder.AppendLine($"");
builder.AppendLine($"【项目】:【{criterionInfo.Trial.TrialCode}】");
builder.AppendLine($"【项目Id】:【{criterionInfo.TrialId}】");
builder.AppendLine($"【标准】:【{criterionInfo.CriterionName}】");
builder.AppendLine($"【标准Id】:【{criterionInfo.Id}】");
builder.AppendLine($"【受试者】:【{taskInfo.Subject.ShortName}】");
builder.AppendLine($"【受试者Id】:【{taskInfo.Subject.Id}】");
builder.AppendLine($"【阅片人】:【{taskInfo.DoctorUser.FirstName}】");
builder.AppendLine($"【阅片人Id】:【{taskInfo.DoctorUser.Id}】");
builder.AppendLine($"【任务】:【{taskInfo.TaskBlindName}】");
builder.AppendLine($"【任务Id】:【{taskInfo.Id}】");
builder.AppendLine($"【病灶类型】:【{lesionName}】");
var lesionInfo = inDto.QuestionInfo.Where(x => x.LesionType == lesionType).FirstOrDefault();
if (lesionInfo != null)
{
lesionInfo.TableRowInfoList.OrderBy(x => x.RowIndex).ForEach(x =>
{
builder.AppendLine(@$"【病灶编号】:【{x.RowIndex.ToString()}】,
【病灶长径】:【{x.TableQuestionList.Where(y => y.QuestionMark == QuestionMark.MajorAxis).Select(y => y.Answer).FirstIsNullReturnEmpty()}】,
【病灶短径】:【{x.TableQuestionList.Where(y => y.QuestionMark == QuestionMark.ShortAxis).Select(y => y.Answer).FirstIsNullReturnEmpty()}】,
【病灶状态】:【{x.TableQuestionList.Where(y => y.QuestionMark == QuestionMark.State).Select(y => y.Answer).FirstIsNullReturnEmpty()}】");
});
}
_logger.LogError(builder.ToString());
}
/// <summary>
/// 获取ReadingCalculateDto
/// </summary>
/// <param name="visitTaskId"></param>
/// <returns></returns>
public async Task<ReadingCalculateDto> GetReadingCalculateDto(Guid visitTaskId)
{
var visitTask = await _visitTaskRepository.Where(x => x.Id == visitTaskId).FirstNotNullAsync();
var criterionInfo = await _readingQuestionCriterionTrialRepository.Where(x => x.Id == visitTask.TrialReadingCriterionId).FirstNotNullAsync();
var subjectVisit = await _subjectVisitRepository.Where(x => x.Id == (visitTask.SourceSubjectVisitId ?? default(Guid))).FirstOrDefaultAsync();
var baseLineVisitId = await _subjectVisitRepository.Where(x => x.SubjectId == visitTask.SubjectId && x.IsBaseLine).Select(x => x.Id).FirstOrDefaultAsync();
var rowInfoList = await _readingTableAnswerRowInfoRepository.Where(x => x.VisitTaskId == visitTaskId).ToListAsync();
var baseLinetaskId = await _visitTaskRepository.Where(x => x.SourceSubjectVisitId == baseLineVisitId && x.TaskState == TaskState.Effect
&& x.TrialReadingCriterionId == visitTask.TrialReadingCriterionId
&& x.ArmEnum == visitTask.ArmEnum).Select(x => x.Id).FirstOrDefaultAsync();
List<QuestionInfo> questionInfos = await _readingQuestionTrialRepository.Where(x => x.ReadingQuestionCriterionTrialId == visitTask.TrialReadingCriterionId).Select(x => new QuestionInfo()
{
LesionType = x.LesionType,
QuestionId = x.Id,
QuesionName = x.QuestionName.LanguageName(x.QuestionEnName, _userInfo.IsEn_Us),
OrderMark = x.OrderMark,
QuestionType = x.QuestionType,
ValueType = x.ValueType,
}).ToListAsync();
var questionAnswers = await _readingTaskQuestionAnswerRepository.Where(x => x.VisitTaskId == visitTaskId).Select(x => new
{
x.ReadingQuestionTrialId,
x.Answer
}).ToListAsync();
var tableQuestion = await _readingTableQuestionAnswerRepository.Where(x => x.VisitTaskId == visitTaskId).Include(x => x.ReadingTableQuestionTrial).Select(x => new TableQuestionInfo()
{
Answer = x.Answer,
AnswerId = x.Id,
QuestionMark = x.ReadingTableQuestionTrial.QuestionMark,
TableQuestionId = x.TableQuestionId,
QuestionId = x.QuestionId,
QuestionType = x.ReadingQuestionTrial.QuestionType,
RowIndex = x.RowIndex,
RowId = x.RowId,
}).ToListAsync();
foreach (var item in questionInfos)
{
item.Answer = questionAnswers.Where(y => y.ReadingQuestionTrialId == item.QuestionId).Select(x => x.Answer).FirstOrDefault() ?? string.Empty;
var thisItemRowInfo = rowInfoList.Where(x => x.QuestionId == item.QuestionId).ToList();
var thisItemTableQuestions = tableQuestion.Where(x => x.QuestionId == item.QuestionId).ToList();
item.TableRowInfoList = thisItemRowInfo.Select(x => new TableRowInfo()
{
RowId = x.Id,
RowIndex = x.RowIndex,
MeasureData = x.MeasureData,
OtherMeasureData = x.OtherMeasureData,
FristAddTaskNum = x.FristAddTaskNum,
TableQuestionList = tableQuestion.Where(y => y.QuestionId == item.QuestionId && y.RowId == x.Id).ToList(),
}).ToList();
}
ReadingCalculateDto readingData = new ReadingCalculateDto()
{
SubjectId = visitTask.SubjectId,
TaskBlindName = visitTask.TaskBlindName,
IsConvertedTask = await _visitTaskRepository.Where(x => x.Id == visitTaskId).Select(x => x.IsConvertedTask).FirstOrDefaultAsync(),
BeforeConvertedTaskId = visitTask.BeforeConvertedTaskId,
VisitTaskId = visitTaskId,
SubjectVisitId = visitTask.SourceSubjectVisitId!.Value,
QuestionInfo = questionInfos,
CriterionId = visitTask.TrialReadingCriterionId,
TrialId = visitTask.TrialId,
IsAnalysisCreate = visitTask.IsAnalysisCreate,
IsSelfAnalysis = visitTask.IsSelfAnalysis,
IsBaseLine = subjectVisit!.IsBaseLine,
DoctorUserId = visitTask.DoctorUserId,
TrialReadingCriterionId = visitTask.TrialReadingCriterionId,
BaseLineTaskId = baseLinetaskId,
ArmEnum = visitTask.ArmEnum,
VisitName = subjectVisit.VisitName,
BlindName = subjectVisit.BlindName,
VisitTaskNum = visitTask.VisitTaskNum,
DigitPlaces = criterionInfo.DigitPlaces ?? 2,
};
return readingData;
}
/// <summary>
/// 添加转化任务病灶信息
/// </summary>
/// <param name="visitTaskId"></param>
/// <param name="beforeConvertedTaskId"></param>
/// <returns></returns>
public async Task AddConvertedTaskFocus(Guid visitTaskId, Guid beforeConvertedTaskId)
{
var originalTask = await _visitTaskRepository.Where(x => x.Id == visitTaskId).Include(x => x.TrialReadingCriterion).FirstNotNullAsync();
var taskAnswer = await _readingTaskQuestionAnswerRepository.Where(x => x.VisitTaskId == beforeConvertedTaskId && x.ReadingQuestionTrial.QuestionType != QuestionType.AdjustReason && x.ReadingQuestionTrial.Type != "calculation").IgnoreAutoIncludes().AsNoTracking().ToListAsync();
taskAnswer.ForEach(x =>
{
x.VisitTaskId = visitTaskId;
x.Id = NewId.NextGuid();
});
var tableRowAnswers = await _readingTableAnswerRowInfoRepository.Where(x => x.VisitTaskId == beforeConvertedTaskId).AsNoTracking().ProjectTo<CopyTableAnswerRowInfo>(_mapper.ConfigurationProvider).IgnoreAutoIncludes().ToListAsync();
tableRowAnswers.ForEach(x =>
{
x.VisitTaskId = visitTaskId;
x.IsCurrentTaskAdd = false;
x.FristAddTaskId = x.FristAddTaskId == beforeConvertedTaskId ? visitTaskId : x.FristAddTaskId;
x.Id = NewId.NextGuid();
});
tableRowAnswers.ForEach(x =>
{
x.SplitRowId = tableRowAnswers.Where(y => y.OriginalId == x.SplitRowId).Select(y => y.Id).FirstOrDefault();
x.MergeRowId = tableRowAnswers.Where(y => y.OriginalId == x.MergeRowId).Select(y => y.Id).FirstOrDefault();
});
var tableAnswer = await _readingTableQuestionAnswerRepository.Where(x => x.VisitTaskId == beforeConvertedTaskId).IgnoreAutoIncludes().AsNoTracking().ToListAsync();
tableAnswer.ForEach(x =>
{
x.Id = NewId.NextGuid();
x.VisitTaskId = visitTaskId;
x.RowId = tableRowAnswers.Where(y => y.OriginalId == x.RowId).Select(x => x.Id).FirstOrDefault();
});
var addrowInfo = _mapper.Map<List<ReadingTableAnswerRowInfo>>(tableRowAnswers);
switch (originalTask.TrialReadingCriterion.CriterionType)
{
case CriterionType.IRECIST1Point1:
//非靶病灶全部数据复制,不可更改。支持如果状态为:显著增大需要自动改为: 显著增大(iUPD)
var stateQuestionId = await _readingTableQuestionTrialRepository.Where(x => x.TrialCriterionId == originalTask.TrialReadingCriterionId
&& x.ReadingQuestionTrial.LesionType == LesionType.NonTargetLesions && x.QuestionMark == QuestionMark.State).Select(x => x.Id).FirstOrDefaultAsync();
tableAnswer.ForEach(x =>
{
if (x.TableQuestionId == stateQuestionId && x.Answer.EqEnum(NoTargetState.Increase))
{
x.Answer = NoTargetState.IUPD.GetEnumInt();
}
});
// 新转换为其它既往新病灶: 状态为消失、疑似、无法评估的新病灶自动转换为:其它既往新病灶,且不可以编辑
// 找到新病灶问题
var newLesionQuestion = await _readingQuestionTrialRepository.Where(x => x.ReadingQuestionCriterionTrialId == originalTask.TrialReadingCriterionId && x.LesionType == LesionType.NewLesions).FirstOrDefaultAsync();
// 找到其他既往新病灶
var otherLesionQuestion = await _readingQuestionTrialRepository.Where(x => x.ReadingQuestionCriterionTrialId == originalTask.TrialReadingCriterionId && x.LesionType == LesionType.OtherPreviousNewLesion).FirstOrDefaultAsync();
if (newLesionQuestion != null && otherLesionQuestion != null)
{
// 找到表格问题
var newLesionTableQuestionList = await _readingTableQuestionTrialRepository.Where(x => x.ReadingQuestionId == newLesionQuestion.Id).ToListAsync();
// 找到表格问题
var otherLesionTableQuestionList = await _readingTableQuestionTrialRepository.Where(x => x.ReadingQuestionId == otherLesionQuestion.Id).ToListAsync();
// 找到病灶状态
var newstateQuestionId = newLesionTableQuestionList.Where(x => x.QuestionMark == QuestionMark.State).Select(x => x.Id).FirstOrDefault();
var stateAnswers = new List<string>() {
NewLesionState.Loss.GetEnumInt(),
NewLesionState.Suspected.GetEnumInt(),
NewLesionState.UnableEvaluate.GetEnumInt()
};
var needRowIds = tableAnswer.Where(x => x.TableQuestionId == newstateQuestionId && stateAnswers.Contains(x.Answer)).Select(x => x.RowId).Distinct().ToList();
var index = 0;
addrowInfo.ForEach(x =>
{
if (needRowIds.Contains(x.Id))
{
index++;
x.RowIndex = index;
x.RowMark = otherLesionQuestion.OrderMark + x.RowIndex.GetLesionMark();
var fristAddTaskId = x.FristAddTaskId.Clone();
x.FromMark = fristAddTaskId == beforeConvertedTaskId ? string.Empty : x.RowMark;
x.FristAddTaskId = fristAddTaskId == beforeConvertedTaskId ? visitTaskId : fristAddTaskId;
x.QuestionId = otherLesionQuestion.Id;
x.OrderMark = otherLesionQuestion.OrderMark;
x.ReportMark = x.RowMark;
}
});
tableAnswer.ForEach(x =>
{
if (needRowIds.Contains(x.RowId))
{
var row = addrowInfo.Where(y => y.Id == x.RowId).FirstOrDefault();
if (row != null)
{
x.RowIndex = row.RowIndex;
}
x.QuestionId = otherLesionQuestion.Id;
var newLesionTableQuestion = newLesionTableQuestionList.Where(y => y.Id == x.TableQuestionId).FirstOrDefault();
if (newLesionTableQuestion != null)
{
x.TableQuestionId = otherLesionTableQuestionList.Where(y => y.QuestionMark == newLesionTableQuestion.QuestionMark).Select(x => x.Id).FirstOrDefault();
}
}
});
}
break;
}
await _readingTaskQuestionAnswerRepository.AddRangeAsync(taskAnswer);
await _readingTableAnswerRowInfoRepository.AddRangeAsync(addrowInfo);
await _readingTableQuestionAnswerRepository.AddRangeAsync(tableAnswer);
await _readingTableQuestionAnswerRepository.SaveChangesAsync();
}
/// <summary>
/// 获取阅片报告任务List
/// </summary>
/// <param name="visitTaskId"></param>
/// <returns></returns>
public async Task<List<VisitTaskInfo>> GetReadingReportTaskList(Guid visitTaskId)
{
var visitTaskInfo = await _visitTaskRepository.Where(x => x.Id == visitTaskId).Include(x => x.TrialReadingCriterion).FirstNotNullAsync();
var isAdditionalQuestionId = await _readingQuestionTrialRepository.Where(x => x.ReadingQuestionCriterionTrialId == visitTaskInfo.TrialReadingCriterionId && x.IsAdditional).IgnoreQueryFilters().Select(x => x.Id).ToListAsync();
var taskquery = _visitTaskRepository
.Where(x => (x.SubjectId == visitTaskInfo.SubjectId
&& (x.TaskState == TaskState.Effect || x.TaskState == TaskState.Freeze)
&& x.IsAnalysisCreate == visitTaskInfo.IsAnalysisCreate
&& x.DoctorUserId == visitTaskInfo.DoctorUserId
&& x.IsSelfAnalysis == visitTaskInfo.IsSelfAnalysis
&& x.VisitTaskNum <= visitTaskInfo.VisitTaskNum
&& x.ArmEnum == visitTaskInfo.ArmEnum
&& x.TrialReadingCriterionId == visitTaskInfo.TrialReadingCriterionId
&& x.ReadingCategory == ReadingCategory.Visit && x.ReadingTaskState == ReadingTaskState.HaveSigned) || x.Id == visitTaskId
);
if (visitTaskInfo.ReadingTaskState == ReadingTaskState.HaveSigned)
{
taskquery = _visitTaskRepository.Where(x => visitTaskInfo.ReportRelatedTaskIdList.Contains(x.Id) || x.Id == visitTaskInfo.Id);
}
if (visitTaskInfo.TrialReadingCriterion.IsReadingTaskViewInOrder != ReadingOrder.InOrder)
{
taskquery = _visitTaskRepository.Where(x => x.Id == visitTaskInfo.Id);
}
var taskInfoList = await taskquery.OrderBy(x => x.VisitTaskNum).Select(x => new VisitTaskInfo()
{
BlindName = x.TaskBlindName,
IsBaseLine = x.SourceSubjectVisit.IsBaseLine,
VisitTaskId = x.Id,
TaskState = x.TaskState,
TaskName = x.TaskName,
LatestScanDate = x.SourceSubjectVisit != null ? x.SourceSubjectVisit.LatestScanDate : null,
VisitTaskNum = x.VisitTaskNum,
IsConvertedTask = x.IsConvertedTask,
BeforeConvertedTaskId = x.BeforeConvertedTaskId,
//CrterionDictionaryGroup = x.CrterionDictionaryGroup,
IsCurrentTask = x.Id == visitTaskId,
}).OrderBy(x => x.VisitTaskNum).ThenByDescending(x => x.TaskState).ToListAsync();
taskInfoList.ForEach(x =>
{
x.CrterionDictionaryGroup = ReadingCommon.GetCrterionDictionaryGroup(x.IsConvertedTask);
});
var taskIds = taskInfoList.Select(x => x.VisitTaskId).ToList();
var isHaveAdditionalTaskIds = await _readingTaskQuestionAnswerRepository.Where(x => taskIds.Contains(x.VisitTaskId) && isAdditionalQuestionId.Contains(x.ReadingQuestionTrialId)).Select(x => x.VisitTaskId).Distinct().ToListAsync();
taskInfoList.ForEach(x =>
{
x.IsHaveAdditionalQuestion = isHaveAdditionalTaskIds.Contains(x.VisitTaskId);
});
return taskInfoList;
}
}
}