irc-netcore-api/IRaCIS.Core.Application/Service/Reading/ReadModuleService.cs

491 lines
24 KiB
C#

using IRaCIS.Application.Interfaces;
using IRaCIS.Core.Infra.EFCore;
using IRaCIS.Core.Domain.Share;
using IRaCIS.Core.Application.Filter;
using Microsoft.AspNetCore.Mvc;
using IRaCIS.Core.Application.Service.WorkLoad.DTO;
using Microsoft.AspNetCore.Authorization;
using IRaCIS.Core.Application.Auth;
using IRaCIS.Core.Application.Service.Reading.Dto;
using MassTransit;
using Panda.DynamicWebApi.Attributes;
using IRaCIS.Core.Application.Contracts;
using IRaCIS.Core.Infra.EFCore.Common;
using System.Linq.Dynamic.Core;
using IRaCIS.Core.Application.Service;
using IRaCIS.Core.Application.ViewModel;
using IRaCIS.Core.Infrastructure;
namespace IRaCIS.Application.Services
{
/// <summary>
/// 生成的阅片模块(在大列表上展示的) 阅片期
/// </summary>
[ApiExplorerSettings(GroupName = "Reading")]
public class ReadModuleService : BaseService
{
public IRepository<SubjectVisit> _subjectVisitRepository;
private readonly IRepository<Subject> _subjectRepository;
private readonly IRepository<VisitStage> _visitstageRepository;
private readonly IRepository<User> _userRepository;
private readonly IRepository<Trial> _trialRepository;
private readonly IVisitTaskHelpeService _visitTaskHelpeService;
private readonly IRepository<VisitTask> _visitTaskRepository;
private readonly IRepository<ClinicalDataTrialSet> _clinicalDataTrialSetRepository;
private readonly IRepository<ReadModuleView> _readModuleViewRepository;
private readonly IRepository<DicomInstance> _dicomInstanceRepository;
private readonly IRepository<NoneDicomStudyFile> _noneDicomStudyFileRepository;
private readonly IRepository<ReadingPeriodSet> _readingPeriodSetRepository;
private readonly IRepository<ReadModule> _readModuleRepository;
public ReadModuleService(IRepository<SubjectVisit> subjectVisitRepository,
IRepository<Subject> subjectRepository,
IRepository<VisitStage> visitstageRepository,
IRepository<User> UserRepository,
IRepository<Trial> trialRepository,
IVisitTaskHelpeService visitTaskHelpeService,
IRepository<VisitTask> visitTaskRepository,
IRepository<ClinicalDataTrialSet> clinicalDataTrialSetRepository,
IRepository<ReadModuleView> readModuleViewRepository,
IRepository<DicomInstance> dicomInstanceRepository,
IRepository<NoneDicomStudyFile> noneDicomStudyFileRepository,
IRepository<ReadingPeriodSet> readingPeriodSetRepository,
IRepository<ReadModule> readModuleRepository
)
{
this._subjectVisitRepository = subjectVisitRepository;
this._subjectRepository = subjectRepository;
this._visitstageRepository = visitstageRepository;
this._userRepository = UserRepository;
this._trialRepository = trialRepository;
this._visitTaskHelpeService = visitTaskHelpeService;
this._visitTaskRepository = visitTaskRepository;
this._clinicalDataTrialSetRepository = clinicalDataTrialSetRepository;
this._readModuleViewRepository = readModuleViewRepository;
this._dicomInstanceRepository = dicomInstanceRepository;
this._noneDicomStudyFileRepository = noneDicomStudyFileRepository;
this._readingPeriodSetRepository = readingPeriodSetRepository;
this._readModuleRepository = readModuleRepository;
}
/// <summary>
/// 获取读片计划列表 byZhouhang
/// </summary>
/// <param name="dto"></param>
/// <returns></returns>
public async Task<(PageOutput<ReadPlanView>, object)> GetReadPlanList(GetReadModuleDto dto)
{
var subjectQuery = _subjectRepository
.WhereIf(dto.TrialId != null, x => x.TrialId == dto.TrialId)
.WhereIf(dto.SubjectId != null, x => x.Id == dto.SubjectId)
.WhereIf(dto.TrialSiteCode != null, x => x.TrialSite.TrialSiteCode == dto.TrialSiteCode)
.WhereIf(dto.SubjectCode != null, x => x.Code == dto.SubjectCode)
.Select(x => new ReadPlanView
{
TrialSiteCode = x.TrialSite.TrialSiteCode,
SiteCode = x.TrialSite.TrialSiteCode,
SiteId = x.SiteId,
SubjectCode = x.Code,
SubjectId = x.Id,
//Data = x.SubjectVisitList.OrderByDescending(y => y.VisitNum).Select(y => new GetReadModuleOutDto()
//{
// Id = y.Id, //id
// Name = y.VisitName,
// ModuleType = y.InPlan ? ModuleTypeEnum.InPlanSubjectVisit : ModuleTypeEnum.OutPlanSubjectVisit, // 模块类型
// IsUrgent = x.IsUrgent, // 是否加急
// SubjectVisitId = y.Id, // 访视ID
// SubjectVisitName = y.VisitName, // 访视名称
// Status = ReadingCommon.GetVisitSubmitStateEnum(y), // 状态
// CreateTime = y.CreateTime, // 创建时间
// SubjectCode = y.Subject.Code, // 受试者code
// TrialSiteCode = x.TrialSite.TrialSiteCode, // 中心Code
// VisitNum = y.VisitNum,
// IsFinalVisit = y.IsFinalVisit, // 是否为末次评估
// OutPlanPreviousVisitId = y.OutPlanPreviousVisitId, // 上一访视
// OutPlanPreviousVisitName = y.OutPlanPreviousVisit.VisitName, // 上一访视名称
// SiteId = x.Site.Id, // 中心ID
// IsVisit = true, // 是否为访视
// PDState = y.PDState, // PD 进展
// IsEnrollmentConfirm = y.IsEnrollmentConfirm, // 入组
// SubjectId = x.Id,
//}).ToList(),
//ReadModuleData = x.ReadModuleList.Select(
// z => new GetReadModuleOutDto()
// {
// CreateTime = z.CreateTime,
// Id = z.Id,
// Name = z.ModuleName,
// SubjectId = x.Id,
// ModuleType = z.ModuleType,
// Status = ReadingCommon.GetVisitSubmitStateEnum(z.SubjectVisit),
// SubjectCode = x.Code,
// TrialSiteCode = x.TrialSite.TrialSiteCode,
// SubjectVisitId = z.SubjectVisitId,
// SubjectVisitName = z.SubjectVisit.VisitName, // 截止访视名称
// CutOffVisitId = z.SubjectVisitId, // 截止访视
// CutOffVisitName = z.SubjectVisit.VisitName, // 截止访视名称
// ReadModuleId = z.ReadModuleId,
// ReadModuleName = z.ReadModuleModel.ModuleName,
// IsUrgent = z.IsUrgent
// }).ToList(),
});
var pageList = await subjectQuery.ToPagedListAsync(dto.PageIndex, dto.PageSize, dto.SortField == null || dto.SortField == string.Empty ? "SiteCode" : dto.SortField,
dto.Asc);
return (pageList, new
{
MaxLength = pageList.CurrentPageData.ToList().Count()
});
}
/// <summary>
/// 获取读片模块
/// </summary>
[HttpPost]
public async Task<(PageOutput<GetReadModuleDtoOut>,object)> GetReadModuleList(GetReadModuleDto dto)
{
#region MyRegion
dto.SortField = dto.SortField.IsNullOrEmpty() ? nameof(ReadModuleView.TrialSiteCode) : dto.SortField;
dto.SortField = dto.Asc ? dto.SortField : dto.SortField + " desc";
var subjectQuery = _readModuleViewRepository.WhereIf(dto.TrialId != null, x => x.TrialId == dto.TrialId)
.WhereIf(dto.SubjectId != null, x => x.SubjectId == dto.SubjectId)
.WhereIf(dto.TrialSiteCode != null && dto.TrialSiteCode != string.Empty, x => x.TrialSiteCode == dto.TrialSiteCode)
.WhereIf(dto.SubjectCode != null && dto.SubjectCode != string.Empty, x => x.SubjectCode == dto.SubjectCode)
.WhereIf(dto.ModuleType != null, x => x.ModuleType == dto.ModuleType)
.WhereIf(dto.ReadingStatus != null, x => x.ReadingStatus == dto.ReadingStatus)
.WhereIf(dto.Name != null, x => x.Name.Contains(dto.Name!)).OrderBy(x => x.SiteCode);
var subjectIds = await subjectQuery.OrderBy(dto.SortField).Select(x => x.SubjectId).Distinct().Skip((dto.PageIndex - 1) * dto.PageSize).Take(dto.PageSize).ToListAsync();
List<ReadModuleView> ReadModuleViewList = await subjectQuery.Where(x => subjectIds.Contains(x.SubjectId)).OrderBy(dto.SortField).ToListAsync();
List<GetReadModuleDtoOut> getReadList = ReadModuleViewList.GroupBy(x => new { x.SubjectId, x.SiteId, x.TrialSiteCode, x.SubjectCode })
.Select(x => new GetReadModuleDtoOut()
{
TrialSiteCode = x.Key.TrialSiteCode,
SiteId = x.Key.SiteId,
SubjectCode = x.Key.SubjectCode,
SubjectId = x.Key.SubjectId,
Data = x.OrderBy(x=>x.ModuleType).ThenBy(x=>x.VisitNum).ToList(),
}).ToList();
PageOutput<GetReadModuleDtoOut> pageOutput = new PageOutput<GetReadModuleDtoOut>()
{
PageSize = dto.PageSize,
CurrentPageData = getReadList,
PageIndex = dto.PageIndex,
TotalCount = await subjectQuery.Select(x => x.SubjectId).Distinct().CountAsync(),
};
var maxcount = 0;
pageOutput.CurrentPageData.ForEach(x =>
{
maxcount = maxcount < x.Data.Count ? x.Data.Count : maxcount;
});
var trialinfo = await _trialRepository.Where(x => x.Id == dto.TrialId).FirstNotNullAsync();
return (pageOutput, new
{
MaxLength = maxcount,
IsReadingTaskViewInOrder=trialinfo.IsReadingTaskViewInOrder,
IsClinicalReading = trialinfo.IsClinicalReading,
OnlyExistsMedicalHistory = !(await _clinicalDataTrialSetRepository.AnyAsync(x => x.TrialId == dto.TrialId && x.ClinicalDataSetName != "既往局部治疗史" && x.IsConfirm)),
IsExistsSubjectClinicalData= await _clinicalDataTrialSetRepository.AnyAsync(x => x.TrialId == dto.TrialId&&x.ClinicalDataLevel== ClinicalLevel.Subject && x.IsConfirm),
IsExistsVisitClinicalData = await _clinicalDataTrialSetRepository.AnyAsync(x => x.TrialId == dto.TrialId && x.ClinicalDataLevel == ClinicalLevel.SubjectVisit && x.IsConfirm),
IsExistsReadingClinicalData = await _clinicalDataTrialSetRepository.AnyAsync(x => x.TrialId == dto.TrialId && x.ClinicalDataLevel == ClinicalLevel.Read && x.IsConfirm),
IsGlobalReading= trialinfo.IsGlobalReading,
}) ;
#endregion
}
///// <summary>
///// 访视阅片完成添加阅片期模块
///// </summary>
///// <returns></returns>
//public async Task<IResponseOutput> VisitFinishReadingAddReadModule(VisitFinishReadingAddReadModuleInDto inDto)
//{
// var subjectVisit = await _subjectRepository.FirstOrDefaultNoTrackingAsync(x => x.Id == inDto.SubjectVisitId);
// List<ReadingPeriodSet> readingPeriodSets= _readingPeriodSetRepository.Where(x=>x.TrialId==inDto.TrialId&&x.IsTakeEffect=&&(x.ReadingScope==ReadingScopeEnum.All||(x.ReadingScope==ReadingScopeEnum.Site&&x.ReadingPeriodSites.Select(y=>y.SiteId).Contains(subjectVisit.SiteId))))
//}
/// <summary>
/// 获取单条详情信息
/// </summary>
/// <param name="dto"></param>
/// <returns></returns>
[HttpPost]
public async Task<GetReadModuleSingleOutdto> GetReadModule(GetReadModuleSingleIndto dto)
{
var data = await GetReadModuleList(new GetReadModuleDto()
{
SubjectId = dto.SubjectId,
TrialId=dto.TrialId,
});
GetReadModuleSingleOutdto? readModule = data.Item1.CurrentPageData.FirstOrDefault().Data.Where(x => x.Id == dto.Id).Select(x => new GetReadModuleSingleOutdto()
{
Id = x.Id,
ModuleType = x.ModuleType,
SubjectVisitId = x.SubjectVisitId,
SubjectVisitName = x.SubjectVisitName,
Status = x.ReadingStatus,
}).FirstOrDefault();
var stakeholderIds = new List<Guid>();
var subjectVisit =await _subjectVisitRepository.FirstOrDefaultAsync(x => x.Id == readModule.SubjectVisitId);
switch (readModule.Status)
{
case ReadingStatusEnum.ImageNotSubmit:
stakeholderIds.AddRange(await _dicomInstanceRepository.Where(x => x.SubjectVisitId == readModule.SubjectVisitId).Select(x => x.CreateUserId).Distinct().ToListAsync());
stakeholderIds.AddRange(await _noneDicomStudyFileRepository.Where(x => x.NoneDicomStudy.SubjectVisitId == readModule.SubjectVisitId).Select(x => x.CreateUserId).Distinct().ToListAsync());
break;
case ReadingStatusEnum.ImageQuality:
if (subjectVisit.PreliminaryAuditUserId != null)
{
stakeholderIds.Add(subjectVisit.PreliminaryAuditUserId.Value);
}
if (subjectVisit.ReviewAuditUserId != null)
{
stakeholderIds.Add(subjectVisit.ReviewAuditUserId.Value);
}
break;
case ReadingStatusEnum.TaskAllocate:
if (subjectVisit.CheckUserId != null)
{
stakeholderIds.Add(subjectVisit.CheckUserId.Value);
}
break;
case ReadingStatusEnum.ImageReading:
case ReadingStatusEnum.ReadCompleted:
var doctorUserId = await _visitTaskRepository.Where(x => (x.SouceReadModuleId == dto.Id || x.SourceSubjectVisitId == dto.Id)&&x.TaskState==TaskState.Effect)
.Where(x => x.DoctorUserId != null).Select(x => x.DoctorUserId.Value).ToListAsync();
stakeholderIds.AddRange(doctorUserId);
break;
};
readModule.StakeholderIds = stakeholderIds.Distinct().ToList();
readModule.StakeholderNames = await _userRepository.Where(x => readModule.StakeholderIds.Contains(x.Id)).Select(x => x.FirstName + "/" + x.LastName).ToListAsync();
return readModule;
}
/// <summary>
/// 添加阅片的时候 获取访视
/// </summary>
/// <param name="inDto"></param>
/// <returns></returns>
public async Task<List<GetSubjectReadVisitsOutDto>> GetSubjectReadVisitList(GetSubjectReadVisitsInDto inDto)
{
var maxReadVisit = await _readModuleRepository.Where(x => x.SubjectId == inDto.SubjectId&&x.ReadingSetType==inDto.ReadingSetType).OrderByDescending(x=>x.VisitNum).FirstOrDefaultAsync();
var maxReadVisitNum= maxReadVisit==null?-1:maxReadVisit.VisitNum;
var visitQuery = _subjectVisitRepository.Where(x => x.SubjectId == inDto.SubjectId && x.LatestScanDate != null&&!x.IsLostVisit);
var finalVisitNum = await visitQuery.Where(x => x.IsFinalVisit).Select(x => x.VisitNum).FirstOrDefaultAsync();
var readModulequery = _readModuleRepository.AsQueryable();
var resultlist= await visitQuery.WhereIf(finalVisitNum != null&& finalVisitNum!=0, x => x.VisitNum <= finalVisitNum)
.WhereIf(inDto.ReadingSetType== ReadingSetType.TumorReading, x => readModulequery.Where(y => y.SubjectVisitId == x.Id && y.ReadingSetType == ReadingSetType.ImageReading).Count() > 0)
.Where(x=>x.VisitNum> maxReadVisitNum)
.Where(x => readModulequery.Where(y => y.SubjectVisitId == x.Id && y.ReadingSetType == inDto.ReadingSetType).Count() == 0).OrderBy(x => finalVisitNum)
.Select(x => new GetSubjectReadVisitsOutDto()
{
SubjectVisitId = x.Id,
VisitName = x.VisitName,
VisitNum = x.VisitNum,
}).ToListAsync();
return resultlist;
}
/// <summary>
/// 添加阅片期
/// </summary>
/// <param name="dto"></param>
/// <returns></returns>
[HttpPost]
public async Task<IResponseOutput> AddReadModule(ReadModuleAddDto dto)
{
var visitQuery = _subjectVisitRepository.Where(x => x.SubjectId == dto.SubjectId);
visitQuery = visitQuery
//.WhereIf(dto.ExpirationDate != null, x => x.LatestScanDate <= dto.ExpirationDate.Value)
.WhereIf(dto.ExpirationVisitNum != null, x => x.VisitNum == dto.ExpirationVisitNum!);
var visit = visitQuery.OrderByDescending(x => x.VisitNum).FirstOrDefault();
if (visit != null)
{
var readModuleData = new ReadModule()
{
Id = NewId.NextGuid(),
SubjectId = dto.SubjectId,
ModuleType = dto.ReadingSetType == ReadingSetType.ImageReading ? ModuleTypeEnum.Global : ModuleTypeEnum.Oncology,
IsUrgent = visit.IsUrgent,
ModuleName = dto.Name,
SubjectVisitId = visit.Id,
ReadingSetType = dto.ReadingSetType,
TrialId = dto.TrialId,
VisitNum = visit.VisitNum,
ReadingStatus = ReadingStatusEnum.TaskAllocate,
};
await _readModuleRepository.AddAsync(readModuleData);
// 判断是否要添加肿瘤学或者全局阅片任务
switch (readModuleData.ModuleType)
{
case ModuleTypeEnum.Global:
var taskListInfo = await _visitTaskRepository.Where(x => x.SourceSubjectVisitId == readModuleData.SubjectVisitId&&x.TaskState==TaskState.Effect && x.ReadingTaskState == ReadingTaskState.HaveSigned
&&!x.IsAnalysisCreate
).ToListAsync();
foreach (var taskInfo in taskListInfo)
{
await _visitTaskHelpeService.AddTaskAsync(new GenerateTaskCommand()
{
OriginalVisitId = taskInfo.Id,
ReadingCategory = GenerateTaskCategory.Global,
TrialId = dto.TrialId,
ReadingGenerataTaskList = new List<ReadingGenerataTaskDTO>() {
new ReadingGenerataTaskDTO()
{
IsUrgent = readModuleData.IsUrgent ?? false,
SubjectId = readModuleData.SubjectId,
VisitNum=readModuleData.VisitNum,
ReadingName = readModuleData.ModuleName,
ReadModuleId =readModuleData.Id,
ReadingCategory = ReadingCategory.Global,
}
}
});
}
break;
case ModuleTypeEnum.Oncology:
var trialInfo = await _trialRepository.Where(x => x.Id == visit.TrialId).FirstNotNullAsync();
var globalModule = await _readModuleRepository.Where(x => x.SubjectId == readModuleData.SubjectId && x.SubjectVisitId == readModuleData.SubjectVisitId&& x.ModuleType == ModuleTypeEnum.Global).FirstOrDefaultAsync();
if (globalModule != null)
{
var globalTaskInfoList = await _visitTaskRepository.Where(x => x.SouceReadModuleId == globalModule.Id && x.TaskState == TaskState.Effect && x.ReadingTaskState == ReadingTaskState.HaveSigned&&!x.IsAnalysisCreate).ToListAsync();
if (globalTaskInfoList.Count() > 0 && globalTaskInfoList.Count == (int)trialInfo.ReadingType)
{
var isAdd = false;
if (globalTaskInfoList[0].JudgeVisitTaskId == null)
{
isAdd = true;
}
else
{
isAdd = await _visitTaskRepository.AnyAsync(x => x.Id == globalTaskInfoList[0].JudgeVisitTaskId && x.ReadingTaskState == ReadingTaskState.HaveSigned);
}
if (isAdd)
{
await _visitTaskHelpeService.AddTaskAsync(new GenerateTaskCommand()
{
OriginalVisitId = globalTaskInfoList[0].Id,
ReadingCategory = GenerateTaskCategory.Oncology,
TrialId = dto.TrialId,
ReadingGenerataTaskList = new List<ReadingGenerataTaskDTO>() {
new ReadingGenerataTaskDTO()
{
IsUrgent = readModuleData.IsUrgent ?? false,
SubjectId = readModuleData.SubjectId,
VisitNum=readModuleData.VisitNum,
ReadingName = readModuleData.ModuleName,
ReadModuleId =readModuleData.Id,
ReadingCategory = ReadingCategory.Oncology,
}
}
});
}
}
}
break;
}
var res = await _readModuleRepository.SaveChangesAsync();
return ResponseOutput.Ok(res);
}
else
{
return ResponseOutput.NotOk("未找到符合要求的访视");
}
}
///// <summary>
///// 新增或者修改
///// </summary>
///// <param name="addOrEditReadModule"></param>
///// <returns></returns>
//[HttpPost]
//public async Task<IResponseOutput> AddOrUpdateReadModuleService(ReadModuleAddOrEdit addOrEditReadModule)
//{
// var entity = await _repository.InsertOrUpdateAsync<ReadModule, ReadModuleAddOrEdit>(addOrEditReadModule, true);
// return ResponseOutput.Ok(entity.Id.ToString());
//}
/// <summary>
/// 删除
/// </summary>
/// <param name="readModuleId"></param>
/// <returns></returns>
[HttpDelete("{readModuleId:guid}")]
public async Task<IResponseOutput> DeleteReadModule(Guid readModuleId)
{
if (await _visitTaskRepository.AnyAsync(x => readModuleId==x.SouceReadModuleId && x.ReadingTaskState == ReadingTaskState.HaveSigned && x.TaskState == TaskState.Effect))
{
throw new BusinessValidationFailedException("当前阅片已生成任务并且阅片完成,操作失败。");
}
await _visitTaskRepository.BatchUpdateNoTrackingAsync(x => readModuleId==x.SouceReadModuleId, x => new VisitTask()
{
TaskState = TaskState.Adbandon
});
await _readModuleRepository.DeleteFromQueryAsync(t => t.Id == readModuleId, true);
await _readModuleRepository.SaveChangesAsync();
return ResponseOutput.Result(true);
}
}
}