406 lines
16 KiB
C#
406 lines
16 KiB
C#
using AutoMapper;
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using IRaCIS.Core.Application.Contracts;
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using IRaCIS.Core.Application.Filter;
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using IRaCIS.Core.Application.Helper;
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using IRaCIS.Core.Domain.Models;
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using IRaCIS.Core.Domain.Share;
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using IRaCIS.Core.Infra.EFCore;
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using IRaCIS.Core.Infrastructure.Extention;
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using MediatR;
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using Microsoft.AspNetCore.Hosting;
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using Microsoft.AspNetCore.Http;
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using Microsoft.AspNetCore.Mvc;
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using Microsoft.AspNetCore.WebUtilities;
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using Microsoft.Net.Http.Headers;
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using System;
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using System.IO;
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using System.Linq;
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using System.Threading.Tasks;
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namespace IRaCIS.Core.API.Controllers
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{
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[ApiExplorerSettings(GroupName = "Trial")]
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[ApiController]
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public class UploadController : ControllerBase
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{
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public IMapper _mapper { get; set; }
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public IUserInfo _userInfo { get; set; }
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private readonly IMediator _mediator;
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private readonly IWebHostEnvironment _hostEnvironment;
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private readonly IServiceProvider _serviceProvider;
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public UploadController(IMapper mapper, IUserInfo userInfo, IMediator mediator, IWebHostEnvironment hostEnvironment, IServiceProvider serviceProvider)
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{
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_serviceProvider = serviceProvider;
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_hostEnvironment = hostEnvironment;
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_mediator = mediator;
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_mapper = mapper;
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_userInfo = userInfo;
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}
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[HttpPost("TrialDocument/UploadTrialDoc/{trialId:guid}")]
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[DisableRequestSizeLimit]
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[DisableFormValueModelBinding]
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public async Task<IResponseOutput> UploadTrialDoc(Guid trialId)
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{
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var boundary = HeaderUtilities.RemoveQuotes(MediaTypeHeaderValue.Parse(Request.ContentType).Boundary).Value;
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var reader = new MultipartReader(boundary, HttpContext.Request.Body);
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var section = await reader.ReadNextSectionAsync();
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while (section != null)
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{
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var hasContentDispositionHeader = ContentDispositionHeaderValue.TryParse(section.ContentDisposition, out var contentDisposition);
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if (hasContentDispositionHeader)
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{
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DealTrialStorePath(trialId, contentDisposition.FileName.Value, out string serverFilePath, out string relativePath );
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await WriteFileAsync(section.Body, serverFilePath);
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//仅仅返回一个文件，如果多文件上传 在最后返回多个路径
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return ResponseOutput.Ok(new
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{
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FilePath = relativePath,
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FullFilePath = relativePath + "?access_token=" + _userInfo.UserToken
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});
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}
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section = await reader.ReadNextSectionAsync();
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}
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return ResponseOutput.Ok();
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}
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[HttpPost("TrialDocument/UploadSystemDoc")]
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[DisableRequestSizeLimit]
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[DisableFormValueModelBinding]
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public async Task<IResponseOutput> UploadSysTemDoc( )
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{
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var boundary = HeaderUtilities.RemoveQuotes(MediaTypeHeaderValue.Parse(Request.ContentType).Boundary).Value;
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var reader = new MultipartReader(boundary, HttpContext.Request.Body);
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var section = await reader.ReadNextSectionAsync();
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while (section != null)
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{
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var hasContentDispositionHeader = ContentDispositionHeaderValue.TryParse(section.ContentDisposition, out var contentDisposition);
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if (hasContentDispositionHeader)
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{
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DealSysTemStorePath( contentDisposition.FileName.Value, out string serverFilePath, out string relativePath);
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await WriteFileAsync(section.Body, serverFilePath);
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//仅仅返回一个文件，如果多文件上传 在最后返回多个路径
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return ResponseOutput.Ok(new
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{
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FilePath = relativePath,
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FullFilePath = relativePath + "?access_token=" + _userInfo.UserToken
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});
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}
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section = await reader.ReadNextSectionAsync();
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}
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return ResponseOutput.Ok();
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}
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/// <summary>
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/// 上传通用文档 比如一致性核查的 比如导出的excel 模板
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/// </summary>
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/// <returns></returns>
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[HttpPost("CommonDocument/UploadCommonDoc")]
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[DisableRequestSizeLimit]
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[DisableFormValueModelBinding]
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public async Task<IResponseOutput> UploadCommonDoc(/*string fileType, string moduleType*/)
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{
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var boundary = HeaderUtilities.RemoveQuotes(MediaTypeHeaderValue.Parse(Request.ContentType).Boundary).Value;
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var reader = new MultipartReader(boundary, HttpContext.Request.Body);
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var section = await reader.ReadNextSectionAsync();
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while (section != null)
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{
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var hasContentDispositionHeader = ContentDispositionHeaderValue.TryParse(section.ContentDisposition, out var contentDisposition);
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if (hasContentDispositionHeader)
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{
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DealCommonStorePath(/*fileType, moduleType,*/ contentDisposition.FileName.Value, out string serverFilePath, out string relativePath);
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await WriteFileAsync(section.Body, serverFilePath);
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//仅仅返回一个文件，如果多文件上传 在最后返回多个路径
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return ResponseOutput.Ok(new
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{
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FilePath = relativePath,
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FullFilePath = relativePath + "?access_token=" + _userInfo.UserToken
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});
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}
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section = await reader.ReadNextSectionAsync();
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}
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return ResponseOutput.Ok();
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}
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/// <summary>
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/// 上传系统通知文档
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/// </summary>
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/// <returns></returns>
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[HttpPost("SystemNotice/UploadSystemNoticeDoc")]
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[DisableRequestSizeLimit]
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[DisableFormValueModelBinding]
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public async Task<IResponseOutput> UploadSystemNoticeDoc()
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{
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var boundary = HeaderUtilities.RemoveQuotes(MediaTypeHeaderValue.Parse(Request.ContentType).Boundary).Value;
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var reader = new MultipartReader(boundary, HttpContext.Request.Body);
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var section = await reader.ReadNextSectionAsync();
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while (section != null)
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{
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var hasContentDispositionHeader = ContentDispositionHeaderValue.TryParse(section.ContentDisposition, out var contentDisposition);
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if (hasContentDispositionHeader)
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{
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DealSystemNoticePath( contentDisposition.FileName.Value, out string serverFilePath, out string relativePath);
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await WriteFileAsync(section.Body, serverFilePath);
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//仅仅返回一个文件，如果多文件上传 在最后返回多个路径
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return ResponseOutput.Ok(new
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{
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FilePath = relativePath,
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FullFilePath = relativePath + "?access_token=" + _userInfo.UserToken
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});
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}
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section = await reader.ReadNextSectionAsync();
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}
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return ResponseOutput.Ok();
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}
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private void DealCommonStorePath(/*string fileType, string moduleType,*/ string fileRealName, out string serverFilePath, out string relativePath)
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{
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var rootPath = FileStoreHelper.GetIRaCISRootDataFolder(_hostEnvironment) ;
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//上传根路径
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var _fileStorePath = Path.Combine(rootPath, StaticData.SystemDataFolder);
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//文件类型路径处理
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var uploadFolderPath = Path.Combine(_fileStorePath, StaticData.DataTemplate);
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if (!Directory.Exists(uploadFolderPath)) Directory.CreateDirectory(uploadFolderPath);
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var (trustedFileNameForFileStorage, fileName) = FileStoreHelper.GetStoreFileName(fileRealName);
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relativePath = $"/{StaticData.IRaCISDataFolder}/{StaticData.SystemDataFolder}/{StaticData.DataTemplate}/{trustedFileNameForFileStorage}";
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serverFilePath = Path.Combine(uploadFolderPath, trustedFileNameForFileStorage);
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}
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private void DealSystemNoticePath(string fileRealName, out string serverFilePath, out string relativePath)
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{
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var rootPath = FileStoreHelper.GetIRaCISRootDataFolder(_hostEnvironment);
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//上传根路径
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var _fileStorePath = Path.Combine(rootPath, StaticData.SystemDataFolder);
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//文件类型路径处理
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var uploadFolderPath = Path.Combine(_fileStorePath, StaticData.NoticeAttachment);
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if (!Directory.Exists(uploadFolderPath)) Directory.CreateDirectory(uploadFolderPath);
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var (trustedFileNameForFileStorage, fileName) = FileStoreHelper.GetStoreFileName(fileRealName);
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relativePath = $"/{StaticData.IRaCISDataFolder}/{StaticData.SystemDataFolder}/{StaticData.NoticeAttachment}/{trustedFileNameForFileStorage}";
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serverFilePath = Path.Combine(uploadFolderPath, trustedFileNameForFileStorage);
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}
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private void DealSysTemStorePath( string fileRealName, out string serverFilePath, out string relativePath)
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{
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var rootPath = FileStoreHelper.GetIRaCISRootDataFolder(_hostEnvironment);
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//上传根路径
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var _fileStorePath = Path.Combine(rootPath, StaticData.SystemDataFolder);
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//文件类型路径处理
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var uploadFolderPath = Path.Combine(_fileStorePath, StaticData.SignDocumentFolder);
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if (!Directory.Exists(uploadFolderPath)) Directory.CreateDirectory(uploadFolderPath);
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//var fileNameEX = Path.GetExtension(fileRealName);
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//var trustedFileNameForFileStorage = Guid.NewGuid().ToString() + fileNameEX;
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var trustedFileNameForFileStorage = Guid.NewGuid().ToString() + fileRealName;
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relativePath = $"/{StaticData.IRaCISDataFolder}/{StaticData.SystemDataFolder}/{ StaticData.SignDocumentFolder}/{trustedFileNameForFileStorage}";
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serverFilePath = Path.Combine(uploadFolderPath, trustedFileNameForFileStorage);
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}
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private void DealTrialStorePath(Guid trialId,string fileRealName, out string serverFilePath, out string relativePath)
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{
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var rootPath = FileStoreHelper.GetIRaCISRootDataFolder(_hostEnvironment);
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//上传根路径
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var _fileStorePath = Path.Combine(rootPath, StaticData.TrialDataFolder);
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//文件类型路径处理
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var uploadFolderPath = Path.Combine(_fileStorePath, trialId.ToString(), StaticData.SignDocumentFolder);
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if (!Directory.Exists(uploadFolderPath)) Directory.CreateDirectory(uploadFolderPath);
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var (trustedFileNameForFileStorage, fileName) = FileStoreHelper.GetStoreFileName(fileRealName);
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relativePath = $"/{StaticData.IRaCISDataFolder}/{StaticData.TrialDataFolder}/{trialId}/{StaticData.SignDocumentFolder}/{trustedFileNameForFileStorage}";
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serverFilePath = Path.Combine(uploadFolderPath, trustedFileNameForFileStorage);
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}
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/// <summary>
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/// 上传临床数据
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/// </summary>
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/// <param name="subjectVisitId"></param>
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/// <param name="uploadType"> 1:DICOM DTF 2:非DIOM DTF 3: 受试者临床数据</param>
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/// <param name="_subjectVisitRepository"></param>
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/// <returns></returns>
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[HttpPost("ClinicalData/UploadVisitClinicalData/{trialId:guid}/{subjectVisitId:guid}/{type}")]
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[DisableRequestSizeLimit]
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[DisableFormValueModelBinding]
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[Obsolete]
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public async Task<IResponseOutput> UploadVisitData(Guid subjectVisitId, [FromRoute] UploadFileTypeEnum uploadType, [FromServices] IRepository<SubjectVisit> _subjectVisitRepository)
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{
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var boundary = HeaderUtilities.RemoveQuotes(MediaTypeHeaderValue.Parse(Request.ContentType).Boundary).Value;
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var reader = new MultipartReader(boundary, HttpContext.Request.Body);
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var section = await reader.ReadNextSectionAsync();
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while (section != null)
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{
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var hasContentDispositionHeader = ContentDispositionHeaderValue.TryParse(section.ContentDisposition, out var contentDisposition);
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if (hasContentDispositionHeader)
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{
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DealStorePath(subjectVisitId, contentDisposition.FileName.Value, uploadType, out string serverFilePath, out string relativePath, _subjectVisitRepository);
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await WriteFileAsync(section.Body, serverFilePath);
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//仅仅返回一个文件，如果多文件上传 在最后返回多个路径
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return ResponseOutput.Ok(new
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{
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FilePath = relativePath,
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FullFilePath = relativePath + "?access_token=" + _userInfo.UserToken
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});
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}
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section = await reader.ReadNextSectionAsync();
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}
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return ResponseOutput.Ok();
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}
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public enum UploadFileTypeEnum
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{
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DICOM_DTF = 1,
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NonDICOM_DTF = 2,
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SubjectTreatement = 3
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}
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private void DealStorePath(Guid subjectVisitId, string realName, UploadFileTypeEnum typeEnum, out string serverFilePath, out string relativePath, IRepository<SubjectVisit> _subjectVisitRepository)
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{
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var rootPath = FileStoreHelper.GetIRaCISRootDataFolder(_hostEnvironment);
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//上传根路径
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var _fileStorePath = Path.Combine(rootPath, StaticData.TrialDataFolder);
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var sv = _subjectVisitRepository.Where(t => t.Id == subjectVisitId).Select(t => new { t.TrialId, t.SiteId, t.SubjectId }).FirstOrDefault();
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//处理存储的文件夹
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var typeFolder = typeEnum == UploadFileTypeEnum.SubjectTreatement ? StaticData.TreatmenthistoryFolder
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: typeEnum == UploadFileTypeEnum.NonDICOM_DTF ? StaticData.NoneDicomFolder
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: /*typeEnum == UploadFileTypeEnum.DICOM_DTF ?*/ StaticData.DicomFolder;
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string uploadFolderPath = Path.Combine(_fileStorePath, sv.TrialId.ToString(), sv.SiteId.ToString(), sv.SubjectId.ToString(), subjectVisitId.ToString(), typeFolder);
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if (!Directory.Exists(uploadFolderPath))
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{
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Directory.CreateDirectory(uploadFolderPath);
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}
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var fileNameEX = Path.GetExtension(realName);
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var trustedFileNameForFileStorage = Guid.NewGuid().ToString() + fileNameEX;
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relativePath = $"/{StaticData.TrialDataFolder}/{sv.TrialId}/{sv.SiteId}/{sv.SubjectId}/{subjectVisitId}/{typeFolder}/{trustedFileNameForFileStorage}";
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serverFilePath = Path.Combine(uploadFolderPath, trustedFileNameForFileStorage);
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//处理 是上传文件返回路径 还是上传文件后，需要保存数据库
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if (typeEnum == UploadFileTypeEnum.SubjectTreatement)
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{
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var repository = _serviceProvider.GetService(typeof(IRepository<PreviousPDF>)) as IRepository<PreviousPDF>;
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_= repository.InsertOrUpdateAsync(new PreviousPDFAddOrEdit() { FileName = realName, Path = relativePath, SubjectVisitId = subjectVisitId }, true).Result;
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}
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else if (typeEnum == UploadFileTypeEnum.NonDICOM_DTF)
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{
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}
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else if (typeEnum == UploadFileTypeEnum.NonDICOM_DTF)
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{
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}
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}
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/// <summary>
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/// 写文件导到磁盘
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/// </summary>
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/// <param name="stream">流</param>
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/// <param name="path">文件保存路径</param>
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/// <returns></returns>
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private static async Task<int> WriteFileAsync(System.IO.Stream stream, string path)
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{
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const int FILE_WRITE_SIZE = 84975;//写出缓冲区大小
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int writeCount = 0;
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using (FileStream fileStream = new FileStream(path, FileMode.Create, FileAccess.Write, FileShare.Write, FILE_WRITE_SIZE, true))
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{
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byte[] byteArr = new byte[FILE_WRITE_SIZE];
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int readCount = 0;
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while ((readCount = await stream.ReadAsync(byteArr, 0, byteArr.Length)) > 0)
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{
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await fileStream.WriteAsync(byteArr, 0, readCount);
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writeCount += readCount;
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}
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}
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return writeCount;
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}
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}
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}
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