379 lines
18 KiB
C#
379 lines
18 KiB
C#
using IRaCIS.Application.Interfaces;
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using IRaCIS.Core.Infra.EFCore;
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using IRaCIS.Core.Domain.Share;
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using IRaCIS.Core.Application.Filter;
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using Microsoft.AspNetCore.Mvc;
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using IRaCIS.Core.Application.Service.WorkLoad.DTO;
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using Microsoft.AspNetCore.Authorization;
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using IRaCIS.Core.Application.Auth;
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using IRaCIS.Core.Application.Service.Reading.Dto;
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using MassTransit;
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using System.ComponentModel.DataAnnotations;
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using System.Reflection;
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using IRaCIS.Core.Infra.EFCore.Common;
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using IRaCIS.Core.Application.Contracts;
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using IRaCIS.Core.Application.Service.Inspection.DTO;
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using Panda.DynamicWebApi.Attributes;
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namespace IRaCIS.Application.Services
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{
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/// <summary>
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/// 阅片临床数据
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/// </summary>
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[ApiExplorerSettings(GroupName = "Reading")]
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public class ReadingClinicalDataService : BaseService, IReadingClinicalDataService
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{
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private readonly IRepository<ReadingClinicalData> _readingClinicalDataRepository;
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private readonly IRepository<ClinicalDataTrialSet> _clinicalDataTrialSetRepository;
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private readonly IRepository<PreviousPDF> _previousPDFRepository;
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private readonly IRepository<SubjectVisit> _subjectVisitRepository;
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private readonly IRepository<PreviousHistory> _previousHistoryRepository;
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private readonly IRepository<PreviousOther> _previousOtherRepository;
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private readonly IRepository<PreviousSurgery> _previousSurgeryRepository;
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private readonly IRepository<ReadingClinicalDataPDF> _readingClinicalDataPDFRepository;
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public ReadingClinicalDataService(IRepository<ReadingClinicalData> readingClinicalDataRepository,
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IRepository<ClinicalDataTrialSet> clinicalDataTrialSetRepository,
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IRepository<PreviousPDF> previousPDFRepository,
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IRepository<SubjectVisit> subjectVisitRepository,
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IRepository<PreviousHistory> previousHistoryRepository,
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IRepository<PreviousOther> previousOtherRepository,
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IRepository<PreviousSurgery> previousSurgeryRepository,
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IRepository<ReadingClinicalDataPDF> readingClinicalDataPDFRepository
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)
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{
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this._readingClinicalDataRepository = readingClinicalDataRepository;
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this._clinicalDataTrialSetRepository = clinicalDataTrialSetRepository;
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this._previousPDFRepository = previousPDFRepository;
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this._subjectVisitRepository = subjectVisitRepository;
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this._previousHistoryRepository = previousHistoryRepository;
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this._previousOtherRepository = previousOtherRepository;
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this._previousSurgeryRepository = previousSurgeryRepository;
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this._readingClinicalDataPDFRepository = readingClinicalDataPDFRepository;
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}
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/// <summary>
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/// 新增或者修改
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/// </summary>
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/// <param name="indto"></param>
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/// <returns></returns>
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[HttpPost]
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public async Task<IResponseOutput> AddOrUpdateReadingClinicalData(AddOrUpdateReadingClinicalDataDto indto)
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{
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var existsQuery = _readingClinicalDataRepository
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.WhereIf(indto.Id != null,x=>x.Id!=indto.Id)
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.Where(x => x.ClinicalDataTrialSetId == indto.ClinicalDataTrialSetId&&x.ReadingId==indto.ReadingId);
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if (await existsQuery.AnyAsync())
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{
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return ResponseOutput.NotOk("存在同类型的临床数据");
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}
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var clinicalDataTrialSet = (await _clinicalDataTrialSetRepository.Where(x => x.Id == indto.ClinicalDataTrialSetId).FirstOrDefaultAsync()).IfNullThrowException();
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if (indto.Id == null)
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{
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var entity = _mapper.Map<ReadingClinicalData>(indto);
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entity.ReadingClinicalDataPDFList = indto.AddFileList.Select(x => new ReadingClinicalDataPDF()
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{
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TrialId = entity.TrialId,
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SubjectId= indto.SubjectId,
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FileName=x.FileName,
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Path=x.Path,
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ClinicalDataTrialSetId=indto.ClinicalDataTrialSetId,
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IsVisit= indto.IsVisit,
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ClinicalDataLevel= clinicalDataTrialSet.ClinicalDataLevel,
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ReadingId=indto.ReadingId
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}).ToList();
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await _readingClinicalDataRepository.AddAsync(entity, true);
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var success = await _readingClinicalDataRepository.SaveChangesAsync();
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return ResponseOutput.Ok(entity.Id);
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}
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else
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{
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var entity = (await _readingClinicalDataRepository.Where(t => t.Id == indto.Id, true).FirstOrDefaultAsync()).IfNullThrowException();
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_mapper.Map(indto, entity);
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await _readingClinicalDataPDFRepository.DeleteFromQueryAsync(x => indto.DeleteFileIds.Contains(x.Id));
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await _readingClinicalDataRepository.SaveChangesAsync();
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var addFileList = indto.AddFileList.Select(x => new ReadingClinicalDataPDF()
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{
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TrialId = entity.TrialId,
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SubjectId = indto.SubjectId,
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FileName = x.FileName,
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Path = x.Path,
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ClinicalDataTrialSetId = indto.ClinicalDataTrialSetId,
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IsVisit = indto.IsVisit,
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ClinicalDataLevel = clinicalDataTrialSet.ClinicalDataLevel,
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ReadingId = indto.ReadingId,
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ReadingClinicalDataId= entity.Id,
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}).ToList();
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await _readingClinicalDataPDFRepository.AddRangeAsync(addFileList);
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var success = await _readingClinicalDataRepository.SaveChangesAsync();
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return ResponseOutput.Ok(entity.Id);
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}
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}
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/// <summary>
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/// 获取CRC上传的文件
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/// </summary>
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/// <param name="inDto"></param>
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/// <returns></returns>
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[HttpPost]
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public async Task<List<GetCRCClinicalDataOutDto>> GetCRCClinicalData(GetCRCClinicalDataInDto inDto)
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{
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await this.AddCRCClinicalData(inDto);
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List<GetCRCClinicalDataOutDto> cRCClinicalDataList = await _readingClinicalDataRepository.Where(x =>x.ReadingId==inDto.SubjectVisitId)
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.Where(x=> x.ClinicalDataTrialSet.TrialId == inDto.TrialId && x.ClinicalDataTrialSet.UploadRole == UploadRole.CRC && x.ClinicalDataTrialSet.ClinicalDataLevel != ClinicalLevel.Read && x.ClinicalDataTrialSet.IsConfirm)
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.Select(x => new GetCRCClinicalDataOutDto()
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{
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Id=x.Id,
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ClinicalDataSetName = x.ClinicalDataTrialSet.ClinicalDataSetName,
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ClinicalUploadType=x.ClinicalDataTrialSet.ClinicalUploadType,
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ClinicalDataTrialSetId = x.ClinicalDataTrialSet.Id,
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FileName=x.ClinicalDataTrialSet.FileName,
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UploadRole=x.ClinicalDataTrialSet.UploadRole,
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Path=x.ClinicalDataTrialSet.Path,
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}).ToListAsync() ;
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List<GetReadingClinicalDataListOutDto> clinicalData = (await this.GetReadingClinicalDataList(new GetReadingClinicalDataListIndto()
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{
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SubjectId = inDto.SubjectId,
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ReadingId = inDto.SubjectVisitId,
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TrialId=inDto.TrialId,
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})).Item1;
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var previousHistoryList = await _previousHistoryRepository.Where(x => x.SubjectVisitId == inDto.SubjectVisitId).ProjectTo<PreviousHistoryView>(_mapper.ConfigurationProvider).ToListAsync();
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var previousOtherList = await _previousOtherRepository.Where(x => x.SubjectVisitId == inDto.SubjectVisitId).ProjectTo<PreviousOtherView>(_mapper.ConfigurationProvider).ToListAsync();
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var previousSurgeryList = await _previousSurgeryRepository.Where(x => x.SubjectVisitId == inDto.SubjectVisitId).ProjectTo<PreviousSurgeryView>(_mapper.ConfigurationProvider).ToListAsync();
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foreach (var item in cRCClinicalDataList)
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{
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item.PDFFileList = clinicalData.Where(y => y.ClinicalDataTrialSetId == item.ClinicalDataTrialSetId).SelectMany(x=>x.FileList).ToList();
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item.ClinicalTableData = new ClinicalDataTable()
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{
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PreviousHistoryList = previousHistoryList.Where(x => x.ClinicalDataTrialSetId == item.ClinicalDataTrialSetId).ToList(),
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PreviousOtherList = previousOtherList.Where(x => x.ClinicalDataTrialSetId == item.ClinicalDataTrialSetId).ToList(),
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PreviousSurgeryList = previousSurgeryList.Where(x => x.ClinicalDataTrialSetId == item.ClinicalDataTrialSetId).ToList(),
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};
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}
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return cRCClinicalDataList;
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}
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/// <summary>
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/// 添加CRC数据类型
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/// </summary>
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/// <returns></returns>
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private async Task AddCRCClinicalData(GetCRCClinicalDataInDto inDto)
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{
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var cRCClinicalDataIds = await _clinicalDataTrialSetRepository.Where(x => x.TrialId == inDto.TrialId && x.UploadRole == UploadRole.CRC && x.ClinicalDataLevel != ClinicalLevel.Read && x.IsConfirm).Select(x => x.Id).ToListAsync();
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var needAddIds = cRCClinicalDataIds.Where(x => _readingClinicalDataRepository.Where(y => y.ReadingId == inDto.SubjectVisitId && x == y.ClinicalDataTrialSetId).Count() == 0).ToList();
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List<ReadingClinicalData> readingClinicals = needAddIds.Select(x => new ReadingClinicalData()
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{
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ClinicalDataTrialSetId = x,
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IsVisit = true,
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SubjectId = inDto.SubjectId,
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ReadingId = inDto.SubjectVisitId,
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TrialId = inDto.TrialId
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}).ToList();
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await _readingClinicalDataRepository.AddRangeAsync(readingClinicals);
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await _readingClinicalDataRepository.SaveChangesAsync();
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}
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///// <summary>
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///// 设置临床数据是否盲化
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///// </summary>
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///// <returns></returns>
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//[HttpPost]
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//public async Task<IResponseOutput> SetReadingClinicalDataIsBlind(SetReadingClinicalDataIsBlind inDto)
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//{
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// await _readingClinicalDataRepository.UpdatePartialFromQueryAsync(inDto.Id, x=>new ReadingClinicalData() {
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// IsBlind=inDto.IsBlind,
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// });
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// return ResponseOutput.Ok(await _readingClinicalDataRepository.SaveChangesAsync());
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//}
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/// <summary>
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/// 删除
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/// </summary>
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/// <param name="id"></param>
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/// <returns></returns>
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[HttpDelete("{id:guid}")]
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public async Task<IResponseOutput> DeleteReadingClinicalData(Guid id)
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{
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await _readingClinicalDataRepository.DeleteFromQueryAsync(x => x.Id == id, true);
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return ResponseOutput.Result(true);
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}
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/// <summary>
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/// 获取下拉菜单
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/// </summary>
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/// <param name="inDto"></param>
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/// <returns></returns>
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[HttpPost]
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public async Task<List<GetTrialClinicalDataSelectOutDto>> GetTrialClinicalDataSelect(GetTrialClinicalDataSelectIndto inDto)
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{
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var userTypes = new List<int>() {
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(int)UserTypeEnum.ProjectManager,
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(int)UserTypeEnum.SPM,
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(int)UserTypeEnum.CPM,
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(int)UserTypeEnum.IndependentReviewer,
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};
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if (userTypes.Contains(_userInfo.UserTypeEnumInt))
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{
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inDto.UploadRole = UploadRole.PM;
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}
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var usedIdsQuery = _readingClinicalDataRepository.Where(x => x.ReadingId == inDto.ReadingId && x.Id != inDto.ReadingClinicalDataId).Select(x => x.ClinicalDataTrialSetId);
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List<GetTrialClinicalDataSelectOutDto> clinicalList = await _clinicalDataTrialSetRepository.Where(x=>x.TrialId==inDto.TrialId&&x.IsConfirm)
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.WhereIf(inDto.UploadRole!=null,x=>x.UploadRole==inDto.UploadRole)
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.Where(x=> !usedIdsQuery.Contains(x.Id))
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.WhereIf(inDto.IsVisit&&inDto.IsBaseLine,x=>x.ClinicalDataLevel == ClinicalLevel.Subject||x.ClinicalDataLevel== ClinicalLevel.SubjectVisit)
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.WhereIf(inDto.IsVisit&&! inDto.IsBaseLine, x => x.ClinicalDataLevel == ClinicalLevel.SubjectVisit)
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.WhereIf(!inDto.IsVisit, x => x.ClinicalDataLevel == ClinicalLevel.Read)
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.Select(x => new GetTrialClinicalDataSelectOutDto()
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{
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ClinicalDataLevel = x.ClinicalDataLevel,
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ClinicalDataSetName = x.ClinicalDataSetName,
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ClinicalUploadType = x.ClinicalUploadType,
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FileName=x.FileName,
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Path=x.Path,
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Id = x.Id
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}).ToListAsync() ;
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return clinicalList;
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}
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/// <summary>
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/// 影像阅片临床数据签名
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/// </summary>
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// [HttpPost]
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[NonDynamicMethod]
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public async Task<IResponseOutput> ReadClinicalDataSign(ReadingClinicalDataSignIndto inDto)
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{
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await _readingClinicalDataRepository.UpdatePartialFromQueryAsync(x => x.Id == inDto.ReadingClinicalDataId, x => new ReadingClinicalData()
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{
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IsSign = true
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});
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var result =await _readingClinicalDataRepository.SaveChangesAsync();
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return ResponseOutput.Result(result);
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}
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/// <summary>
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/// 获取阅片临床数据列表
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/// </summary>
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/// <param name="inDto"></param>
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/// <returns></returns>
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[HttpPost]
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public async Task<(List<GetReadingClinicalDataListOutDto>,object)> GetReadingClinicalDataList(GetReadingClinicalDataListIndto inDto)
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{
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GetTrialClinicalDataSelectIndto getTrialClinicalDataSelectIndto = new GetTrialClinicalDataSelectIndto()
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{
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ReadingId = inDto.ReadingId,
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TrialId = inDto.TrialId,
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IsBaseLine = inDto.IsBaseLine,
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SubjectId = inDto.SubjectId,
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IsVisit = inDto.IsVisit,
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};
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var clinicalDataList = await this.GetTrialClinicalDataSelect(getTrialClinicalDataSelectIndto);
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if (_userInfo.UserTypeEnumInt == (int)UserTypeEnum.ClinicalResearchCoordinator || _userInfo.UserTypeEnumInt == (int)UserTypeEnum.IQC)
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{
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inDto.UploadRole = UploadRole.CRC;
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}
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var isBaseLine = await _subjectVisitRepository.AnyAsync(x => x.Id == inDto.ReadingId && x.IsBaseLine);
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var resultQuery = _readingClinicalDataRepository.Where(x => x.SubjectId == inDto.SubjectId)
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.Where(x => x.ReadingId == inDto.ReadingId)
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.WhereIf(inDto.UploadRole == UploadRole.CRC, x => x.ClinicalDataTrialSet.UploadRole == UploadRole.CRC)
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.Select(x => new GetReadingClinicalDataListOutDto()
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{
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ClinicalDataLevel = x.ClinicalDataTrialSet.ClinicalDataLevel,
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SubjectId = x.SubjectId,
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ClinicalDataSetName = x.ClinicalDataTrialSet.ClinicalDataSetName,
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ClinicalDataTrialSetId = x.ClinicalDataTrialSetId,
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IsSign = x.IsSign,
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ClinicalUploadType = x.ClinicalDataTrialSet.ClinicalUploadType,
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Id = x.Id,
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UploadRole = x.ClinicalDataTrialSet.UploadRole,
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IsCRCUpload = x.ClinicalDataTrialSet.UploadRole == UploadRole.CRC,
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FileList = x.ReadingClinicalDataPDFList.Select(y => new GetFileDto()
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{
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Id = y.Id,
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FileName = y.FileName,
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Path = y.Path,
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CreateTime = y.CreateTime,
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}).ToList()
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});
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var result = await resultQuery.ToListAsync();
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result = result.Where(x => !(x.UploadRole == UploadRole.CRC && x.ClinicalUploadType == ClinicalUploadType.PDF && x.FileList.Count() == 0)).ToList();
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var previousHistoryList = await _previousHistoryRepository.Where(x => x.SubjectVisitId == inDto.ReadingId).ProjectTo<PreviousHistoryView>(_mapper.ConfigurationProvider).ToListAsync();
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var previousOtherList = await _previousOtherRepository.Where(x => x.SubjectVisitId == inDto.ReadingId).ProjectTo<PreviousOtherView>(_mapper.ConfigurationProvider).ToListAsync();
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var previousSurgeryList = await _previousSurgeryRepository.Where(x => x.SubjectVisitId == inDto.ReadingId).ProjectTo<PreviousSurgeryView>(_mapper.ConfigurationProvider).ToListAsync();
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foreach (var item in result)
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{
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item.ClinicalTableData = new ClinicalDataTable()
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{
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PreviousHistoryList = previousHistoryList.Where(x => x.ClinicalDataTrialSetId == item.ClinicalDataTrialSetId).ToList(),
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PreviousOtherList = previousOtherList.Where(x => x.ClinicalDataTrialSetId == item.ClinicalDataTrialSetId).ToList(),
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PreviousSurgeryList = previousSurgeryList.Where(x => x.ClinicalDataTrialSetId == item.ClinicalDataTrialSetId).ToList(),
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};
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}
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return (result, new {
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isCanAddClinicalData= clinicalDataList.Count()>0,
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}) ;
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}
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/// <summary>
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/// 获取单个阅片临床数据的所有文件
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/// </summary>
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/// <param name="inDto"></param>
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/// <returns></returns>
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[HttpPost]
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public async Task<PageOutput<GetReadingClinicalDataPDFListOutDto>> GetReadingClinicalDataPDFList(GetReadingClinicalDataPDFListIndto inDto) {
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var result = await _readingClinicalDataPDFRepository.Where(x => x.ReadingClinicalDataId == inDto.ReadingClinicalDataId).ProjectTo<GetReadingClinicalDataPDFListOutDto>(_mapper.ConfigurationProvider)
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.ToPagedListAsync(inDto.PageIndex, inDto.PageSize, inDto.SortField == null ? nameof(GetReadingClinicalDataPDFListOutDto.FileName) : inDto.SortField,
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inDto.Asc);
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return result;
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}
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/// <summary>
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/// 删除PDF单个文件
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/// </summary>
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/// <param name="id"></param>
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/// <returns></returns>
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[HttpDelete("{id:guid}")]
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public async Task<IResponseOutput> DeleteReadingClinicalDataPDF(Guid id)
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{
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await _readingClinicalDataPDFRepository.DeleteFromQueryAsync(x => x.Id == id, true);
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return ResponseOutput.Result(true);
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}
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}
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}
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