351 lines
16 KiB
C#
351 lines
16 KiB
C#
//--------------------------------------------------------------------
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// 此代码由T4模板自动生成 byzhouhang 20210918
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// 生成时间 2021-12-06 10:54:55
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// 对此文件的更改可能会导致不正确的行为，并且如果重新生成代码，这些更改将会丢失。
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//--------------------------------------------------------------------
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using Microsoft.AspNetCore.Mvc;
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using Microsoft.AspNetCore.Hosting;
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using Microsoft.AspNetCore.Http;
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using IRaCIS.Core.Domain.Share;
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using SharpCompress.Archives;
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using IRaCIS.Core.Application.Filter;
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using IRaCIS.Core.Infra.EFCore;
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using Newtonsoft.Json;
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using IRaCIS.Core.Application.Service.Inspection.Interface;
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using IRaCIS.Core.Application.Service.Inspection.DTO;
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namespace IRaCIS.Core.Application.Contracts
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{
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/// <summary>
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/// NoneDicomStudyService
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/// </summary>
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[ApiExplorerSettings(GroupName = "Image")]
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public class NoneDicomStudyService : BaseService, INoneDicomStudyService
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{
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private readonly IRepository<NoneDicomStudy> _noneDicomStudyRepository;
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private readonly IHttpContextAccessor _httpContext;
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private readonly IWebHostEnvironment _hostEnvironment;
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private readonly IInspectionService _inspectionService;
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private readonly IRepository<NoneDicomStudyFile> _noneDicomStudyFileRepository;
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public NoneDicomStudyService(IRepository<NoneDicomStudy> noneDicomStudyRepository,
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IHttpContextAccessor httpContext,
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IWebHostEnvironment hostEnvironment,
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IInspectionService inspectionService,
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IRepository<NoneDicomStudyFile> noneDicomStudyFileRepository)
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{
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_noneDicomStudyRepository = noneDicomStudyRepository;
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this._httpContext = httpContext;
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this._hostEnvironment = hostEnvironment;
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this._inspectionService = inspectionService;
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_noneDicomStudyFileRepository = noneDicomStudyFileRepository;
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}
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[HttpGet("{subjectVisitId:guid}")]
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public async Task<List<NoneDicomStudyView>> GetNoneDicomStudyList(Guid subjectVisitId)
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{
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var noneDicomStudyQueryable = _noneDicomStudyRepository.Where(t => t.SubjectVisitId == subjectVisitId)
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.ProjectTo<NoneDicomStudyView>(_mapper.ConfigurationProvider, new { token = _userInfo.UserToken });
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return await noneDicomStudyQueryable.ToListAsync();
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}
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[UnitOfWork]
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[TypeFilter(typeof(TrialResourceFilter))]
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public async Task<IResponseOutput<NoneDicomStudyAddReturnDto>> AddOrUpdateNoneDicomStudy(NoneDicomStudyAddOrEdit addOrEditNoneDicomStudy)
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{
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var entity = await _noneDicomStudyRepository.InsertOrUpdateAsync(addOrEditNoneDicomStudy, false);
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if (_repository.Entry(entity).State == Microsoft.EntityFrameworkCore.EntityState.Added)
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{
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entity.Code = _noneDicomStudyRepository.Where(t => t.TrialId == addOrEditNoneDicomStudy.TrialId).Select(t => t.Code).DefaultIfEmpty().Max() + 1;
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}
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entity.StudyCode = "NST" + entity.Code.ToString("D5");
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await _repository.SaveChangesAsync();
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var svTime = _repository.Where<SubjectVisit>(t => t.Id == addOrEditNoneDicomStudy.SubjectVisitId).Select(t => new
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{
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DicomStudyMinStudyTime = t.StudyList.Min(t => (DateTime?)t.StudyTime),
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DicomStudyMaxStudyTime = t.StudyList.Max(t => (DateTime?)t.StudyTime),
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NoneDicomStudyMinStudyTime = t.NoneDicomStudyList.Min(t => (DateTime?)t.ImageDate),
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NoneDicomStudyMaxStudyTime = t.NoneDicomStudyList.Max(t => (DateTime?)t.ImageDate)
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}).FirstOrDefault().IfNullThrowException();
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var minArray = new DateTime?[] { svTime.DicomStudyMinStudyTime, svTime.NoneDicomStudyMinStudyTime, addOrEditNoneDicomStudy.ImageDate };
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var maxArray = new DateTime?[] { svTime.DicomStudyMaxStudyTime, svTime.NoneDicomStudyMaxStudyTime, addOrEditNoneDicomStudy.ImageDate };
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await _repository.BatchUpdateAsync<SubjectVisit>(t => t.Id == addOrEditNoneDicomStudy.SubjectVisitId, u => new SubjectVisit()
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{
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VisitExecuted = VisitExecutedEnum.Executed,
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EarliestScanDate = minArray.Min(),
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LatestScanDate = maxArray.Max()
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});
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await _repository.SaveChangesAsync();
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NoneDicomStudyAddReturnDto noneDicom = new NoneDicomStudyAddReturnDto()
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{
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StudyCode= entity.StudyCode,
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Id= entity.Id
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};
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return ResponseOutput.Ok(noneDicom);
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}
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[TypeFilter(typeof(TrialResourceFilter))]
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[HttpDelete("{noneDicomStudyId:guid}/{trialId:guid}")]
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public async Task<IResponseOutput> DeleteNoneDicomStudy(Guid noneDicomStudyId)
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{
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if (_noneDicomStudyRepository.Where(t => t.Id == noneDicomStudyId)
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.Any(t => t.NoneDicomFileList.Count() > 0))
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{
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return ResponseOutput.NotOk("先移除文件，才允许删除非Dicom");
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}
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var noneDicomStudy = await _noneDicomStudyRepository.FirstOrDefaultAsync(t => t.Id == noneDicomStudyId);
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if (noneDicomStudy == null) return Null404NotFound(noneDicomStudy);
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await _noneDicomStudyRepository.BatchDeleteAsync(t => t.Id == noneDicomStudyId);
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await _noneDicomStudyFileRepository.BatchDeleteAsync(t => t.NoneDicomStudyId == noneDicomStudyId);
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var svTime = await _repository.Where<SubjectVisit>(t => t.Id == noneDicomStudy.SubjectVisitId).Select(t => new
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{
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DicomStudyMinStudyTime = t.StudyList.Min(t => (DateTime?)t.StudyTime),
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DicomStudyMaxStudyTime = t.StudyList.Max(t => (DateTime?)t.StudyTime),
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NoneDicomStudyMinStudyTime = t.NoneDicomStudyList.Min(t => (DateTime?)t.ImageDate),
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NoneDicomStudyMaxStudyTime = t.NoneDicomStudyList.Max(t => (DateTime?)t.ImageDate)
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}).FirstOrDefaultAsync().IfNullThrowException();
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var minArray = new DateTime?[] { svTime.DicomStudyMinStudyTime, svTime.NoneDicomStudyMinStudyTime };
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var maxArray = new DateTime?[] { svTime.DicomStudyMaxStudyTime, svTime.NoneDicomStudyMaxStudyTime };
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await _repository.BatchUpdateAsync<SubjectVisit>(t => t.Id == noneDicomStudy.SubjectVisitId, u => new SubjectVisit()
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{
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EarliestScanDate = minArray.Min(),
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LatestScanDate = maxArray.Max()
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});
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//如果既没有 dicom数据 也没有非dicom 文件 那么提交状态变更回去
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if (await _repository.CountAsync<DicomStudy>(t => t.SubjectVisitId == noneDicomStudy.SubjectVisitId) == 0 && await _repository.CountAsync<NoneDicomStudyFile>(t => t.NoneDicomStudy.SubjectVisitId == noneDicomStudy.SubjectVisitId) == 0)
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{
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await _repository.BatchUpdateAsync<SubjectVisit>(t => t.Id == noneDicomStudy.SubjectVisitId && t.SubmitState == SubmitStateEnum.ToSubmit, u => new SubjectVisit() { VisitExecuted = 0, SubmitState = SubmitStateEnum.None });
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}
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return ResponseOutput.Ok();
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}
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[HttpDelete("{noneDicomStudyFileId:guid}")]
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public async Task<IResponseOutput> DeleteNoneDicomStudyFile(Guid noneDicomStudyFileId)
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{
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var subjectVisitId = await _noneDicomStudyFileRepository.Where(t=>t.Id== noneDicomStudyFileId).Select(t => t.NoneDicomStudy.SubjectVisitId).FirstOrDefaultAsync();
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var success = await _noneDicomStudyFileRepository.BatchDeleteAsync(t => t.Id == noneDicomStudyFileId);
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//如果既没有 dicom数据 也没有非dicom 文件 那么提交状态变更回去
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if (await _repository.CountAsync<DicomStudy>(t => t.SubjectVisitId == subjectVisitId) == 0 && await _repository.CountAsync<NoneDicomStudyFile>(t => t.NoneDicomStudy.SubjectVisitId == subjectVisitId) == 0)
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{
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await _repository.BatchUpdateAsync<SubjectVisit>(t => t.Id == subjectVisitId && t.SubmitState == SubmitStateEnum.ToSubmit, u => new SubjectVisit() { VisitExecuted = 0, SubmitState = SubmitStateEnum.None });
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}
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var subvisit = await _repository.GetQueryable<SubjectVisit>().FirstOrDefaultAsync(x => x.Id == subjectVisitId);
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List<DataInspection> datas = new List<DataInspection>();
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datas.Add(new DataInspection()
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{
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SiteId = subvisit.SiteId,
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SubjectId = subvisit.SubjectId,
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TrialId = subvisit.TrialId,
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SubjectVisitId = subvisit.Id,
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Identification = "Edit|Visit|Status|Visit-Image Upload|Add Image",
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JsonDetail = JsonConvert.SerializeObject(new
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{
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SubmitState = "待提交",
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})
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});
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await _inspectionService.AddListInspectionRecordAsync(datas);
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return ResponseOutput.Ok();
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}
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/// <summary>
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/// 非Dicom检查 文件列表
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/// </summary>
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/// <param name="noneDicomStudyId"></param>
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/// <returns></returns>
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[HttpGet("{noneDicomStudyId:guid}")]
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public async Task<List<NoneDicomStudyFileView>> GetNoneDicomStudyFileList(Guid noneDicomStudyId)
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{
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return await _noneDicomStudyFileRepository.Where(t => t.NoneDicomStudyId == noneDicomStudyId)
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.ProjectTo<NoneDicomStudyFileView>(_mapper.ConfigurationProvider, new { token = _userInfo.UserToken }).ToListAsync();
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}
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[HttpGet("{subjectVisitId:guid}")]
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public async Task<List<NoneDicomStudyFileView>> GetVisitNoneDicomStudyFileList(Guid subjectVisitId)
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{
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return await _repository.Where<NoneDicomStudyFile>(t => t.NoneDicomStudy.SubjectVisitId == subjectVisitId).ProjectTo<NoneDicomStudyFileView>(_mapper.ConfigurationProvider, new { token = _userInfo.UserToken }).ToListAsync();
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}
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/// <summary>
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/// 上传非Dicom 文件 支持压缩包
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/// </summary>
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[HttpPost]
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public async Task<IResponseOutput> NewUploadNoneDicomFile([FromForm]UploadNoneDicomFileDto fileDto)
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{
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var file = this._httpContext.HttpContext?.Request.Form;
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var result= await UploadNoneDicomFile(file, fileDto.subjectVisitId, fileDto.noneDicomStudyId);
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if (result.IsSuccess)
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{
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var data = JsonConvert.DeserializeObject<DataInspectionAddDTO>(fileDto.AuditInfo);
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data.GeneralId = fileDto.noneDicomStudyId;
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await _inspectionService.AddInspectionRecordAsync(data);
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var subvisit =await _repository.GetQueryable<SubjectVisit>().FirstOrDefaultAsync(x => x.Id == fileDto.subjectVisitId);
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List<DataInspection> datas = new List<DataInspection>();
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datas.Add(new DataInspection()
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{
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SiteId = subvisit.SiteId,
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SubjectId = subvisit.SubjectId,
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TrialId = subvisit.TrialId,
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SubjectVisitId = subvisit.Id,
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Identification = "Edit|Visit|Status|Visit-Image Upload|Add Image",
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JsonDetail = JsonConvert.SerializeObject(new
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{
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SubmitState = "待提交",
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})
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});
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await _inspectionService.AddListInspectionRecordAsync(datas);
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}
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return result;
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}
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/// <summary>
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/// 上传非Dicom 文件 支持压缩包
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/// </summary>
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/// <param name="formCollection"></param>
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/// <param name="subjectVisitId"></param>
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/// <param name="noneDicomStudyId"></param>
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/// <param name="_hostEnvironment"></param>
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/// <returns></returns>
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//[DisableRequestSizeLimit]
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[RequestSizeLimit(1_073_741_824)]
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[HttpPost("{noneDicomStudyId:guid}/{subjectVisitId:guid}")]
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public async Task<IResponseOutput> UploadNoneDicomFile(IFormCollection formCollection, Guid subjectVisitId, Guid noneDicomStudyId)
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{
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var rootPath = Directory.GetParent(_hostEnvironment.ContentRootPath.TrimEnd('\\')).IfNullThrowException().FullName;
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//上传根路径
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var _fileStorePath = Path.Combine(rootPath, StaticData.TrialDataFolder);
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var sv = await _repository.Where<SubjectVisit>(t => t.Id == subjectVisitId).Select(t => new { t.TrialId, t.SiteId, t.SubjectId }).FirstOrDefaultAsync().IfNullThrowConvertException();
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string uploadFolderPath = Path.Combine(_fileStorePath, sv.TrialId.ToString(), sv.SiteId.ToString(), sv.SubjectId.ToString(), subjectVisitId.ToString(), StaticData.NoneDicomFolder);
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if (!Directory.Exists(uploadFolderPath))
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{
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Directory.CreateDirectory(uploadFolderPath);
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}
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var startTime = DateTime.Now;
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foreach (IFormFile file in formCollection.Files)
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{
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if (file.FileName.Contains(".Zip", StringComparison.OrdinalIgnoreCase) || file.FileName.Contains(".rar", StringComparison.OrdinalIgnoreCase))
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{
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var archive = ArchiveFactory.Open(file.OpenReadStream());
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foreach (var entry in archive.Entries)
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{
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if (!entry.IsDirectory)
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{
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DealCompressFile(entry, sv, subjectVisitId, noneDicomStudyId, uploadFolderPath);
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}
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}
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}
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else
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{
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var trustedFileNameForFileStorage = GetStoreFileName(file.FileName);
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var relativePath = $"/{StaticData.TrialDataFolder}/{sv.TrialId}/{sv.SiteId}/{sv.SubjectId}/{subjectVisitId}/{StaticData.NoneDicomFolder}/{trustedFileNameForFileStorage}";
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var filePath = Path.Combine(uploadFolderPath, trustedFileNameForFileStorage);
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using (FileStream fs = System.IO.File.Create(filePath))
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{
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await file.CopyToAsync(fs);
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await fs.FlushAsync();
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}
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await _noneDicomStudyFileRepository.AddAsync(new NoneDicomStudyFile() { FileName = file.FileName, Path = relativePath, NoneDicomStudyId = noneDicomStudyId });
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}
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}
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// 上传非Dicom 后 将状态改为待提交 分为普通上传 和QC后重传 普通上传时才改为待提交
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await _repository.BatchUpdateAsync<SubjectVisit>(t => t.Id == subjectVisitId && t.SubmitState == SubmitStateEnum.None, u => new SubjectVisit() { SubmitState = SubmitStateEnum.ToSubmit });
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await _repository.AddAsync(new StudyMonitor()
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{
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FileCount = formCollection.Files.Count, FileSize = formCollection.Files.Sum(t => t.Length), IsDicom = false,
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IsDicomReUpload = false, StudyId = noneDicomStudyId,
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UploadStartTime = startTime, UploadFinishedTime = DateTime.Now, IP = _userInfo.IP,
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TrialId = sv.TrialId,
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SiteId = sv.SiteId,
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SubjectId = sv.SubjectId,
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SubjectVisitId = subjectVisitId,
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});
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await _repository.SaveChangesAsync();
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return ResponseOutput.Ok(/*list*/);
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}
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private string GetStoreFileName(string fileName)
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{
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var realName = fileName;
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var fileNameEX = Path.GetExtension(realName);
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var trustedFileNameForFileStorage = Guid.NewGuid().ToString() + fileNameEX;
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return trustedFileNameForFileStorage;
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}
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private async void DealCompressFile(IArchiveEntry entry, dynamic sv, Guid subjectVisitId, Guid noneDicomStudyId, string uploadFolderPath)
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{
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var trustedFileNameForFileStorage = GetStoreFileName(entry.Key);
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var relativePath = $"/{StaticData.TrialDataFolder}/{sv.TrialId}/{sv.SiteId}/{sv.SubjectId}/{subjectVisitId}/{StaticData.NoneDicomFolder}/{trustedFileNameForFileStorage}";
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var filePath = Path.Combine(uploadFolderPath, trustedFileNameForFileStorage);
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entry.WriteToFile(filePath);
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var fileName = string.Empty;
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if (entry.Key.Contains("\\"))
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{
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fileName = entry.Key.Split("\\").Last();
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}
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await _repository.AddAsync(new NoneDicomStudyFile() { FileName = fileName, Path = relativePath, NoneDicomStudyId = noneDicomStudyId });
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}
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}
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}
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