951 lines
38 KiB
C#
951 lines
38 KiB
C#
using DocumentFormat.OpenXml.EMMA;
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using DocumentFormat.OpenXml.Office2010.Excel;
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using DocumentFormat.OpenXml.Office2013.Drawing.ChartStyle;
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using FellowOakDicom;
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using FellowOakDicom.Imaging;
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using FellowOakDicom.Imaging.Render;
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using FellowOakDicom.IO.Buffer;
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using IRaCIS.Core.Application.Helper;
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using IRaCIS.Core.Application.ViewModel;
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using IRaCIS.Core.Domain.Models;
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using MassTransit;
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using Microsoft.AspNetCore.Authorization;
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using Microsoft.AspNetCore.Hosting;
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using Microsoft.AspNetCore.Mvc;
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using MiniExcelLibs;
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using SharpCompress.Common;
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using System;
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using System.Collections.Generic;
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using System.Data;
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using System.Diagnostics;
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using System.Linq;
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using System.Text;
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using System.Text.RegularExpressions;
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using System.Threading.Tasks;
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using System.Web;
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using static IRaCIS.Core.Domain.Share.StaticData;
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using static Microsoft.EntityFrameworkCore.DbLoggerCategory;
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namespace IRaCIS.Core.Application.Service
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{
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/// <summary>
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/// 项目影像后台下载，不打包
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/// </summary>
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/// <param name="_trialRepository"></param>
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/// <param name="_oSSService"></param>
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[ApiExplorerSettings(GroupName = "Common")]
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public class TrialImageDownloadService(IRepository<Trial> _trialRepository, IOSSService _oSSService, IWebHostEnvironment _hostEnvironment) : BaseService
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{
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/// <summary>
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/// 后端api swagger 下载项目影像
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/// </summary>
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/// <param name="trialId"></param>
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/// <returns></returns>
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[HttpPost]
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[AllowAnonymous]
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public async Task<IResponseOutput> DownloadTrialImage(Guid trialId)
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{
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//var subjectCodeList = new List<string>() { "05002", "07006", "07026" };
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var downloadInfo = _trialRepository.Where(t => t.Id == trialId).Select(t => new
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{
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t.ResearchProgramNo,
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VisitList = t.SubjectVisitList
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//.Where(t=>subjectCodeList.Contains(t.Subject.Code))
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.Select(sv => new
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{
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TrialSiteCode = sv.TrialSite.TrialSiteCode,
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SubjectCode = sv.Subject.Code,
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VisitName = sv.VisitName,
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StudyList = sv.StudyList.Select(u => new
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{
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u.PatientId,
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u.StudyTime,
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u.StudyCode,
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SeriesList = u.SeriesList.Where(t => t.IsReading).Select(z => new
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{
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z.Modality,
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InstancePathList = z.DicomInstanceList.Where(t => t.IsReading).Select(k => new
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{
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k.Path
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}).ToList()
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})
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}).ToList(),
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NoneDicomStudyList = sv.NoneDicomStudyList.Where(t => t.IsReading).Select(nd => new
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{
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nd.Modality,
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nd.StudyCode,
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nd.ImageDate,
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FileList = nd.NoneDicomFileList.Where(t => t.IsReading).Select(file => new
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{
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file.FileName,
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file.Path,
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file.FileType
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}).ToList()
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}).ToList()
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}).ToList()
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}).FirstOrDefault();
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var count = downloadInfo.VisitList.SelectMany(t => t.NoneDicomStudyList).SelectMany(t => t.FileList).Count();
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var count2 = downloadInfo.VisitList.SelectMany(t => t.StudyList).SelectMany(t => t.SeriesList).SelectMany(t => t.InstancePathList).Count();
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Console.WriteLine($"下载总数量：{count}+{count2}={count + count2}");
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if (downloadInfo != null)
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{
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var downloadJobs = new List<Func<Task>>();
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var rootFolder = @"E:\DownloadImage";
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//var rootFolder = FileStoreHelper.GetDonwnloadImageFolder(_hostEnvironment);
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// 获取无效字符（系统定义的）
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string invalidChars = new string(Path.GetInvalidFileNameChars()) + new string(Path.GetInvalidPathChars());
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// 用正则表达式替换所有非法字符为下划线或空字符
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string pattern = $"[{Regex.Escape(invalidChars)}]";
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var regexNo = Regex.Replace(downloadInfo.ResearchProgramNo, pattern, "_");
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// 创建一个临时文件夹来存放文件
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string trialFolderPath = Path.Combine(rootFolder, $"{regexNo}_{NewId.NextGuid()}");
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Directory.CreateDirectory(trialFolderPath);
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foreach (var visitItem in downloadInfo.VisitList)
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{
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if (visitItem.StudyList.Count() == 0 && visitItem.NoneDicomStudyList.Count() == 0)
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{
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continue;
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}
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#region 处理 中心，受试者dicom non-dicom 文件夹层级
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var siteFolderPath = Path.Combine(trialFolderPath, visitItem.TrialSiteCode);
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if (!Directory.Exists(siteFolderPath))
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{
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Directory.CreateDirectory(siteFolderPath);
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}
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#endregion
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foreach (var studyInfo in visitItem.StudyList)
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{
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// 遍历 Series
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foreach (var seriesInfo in studyInfo.SeriesList)
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{
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string studyDicomFolderPath = Path.Combine(siteFolderPath, $"{visitItem.SubjectCode}_{visitItem.VisitName}_DICOM", $"{studyInfo.StudyCode}_{studyInfo.StudyTime?.ToString("yyyy-MM-dd")}_{seriesInfo.Modality}");
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// 创建 影像 文件夹
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Directory.CreateDirectory(studyDicomFolderPath);
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// 遍历 InstancePathList
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foreach (var instanceInfo in seriesInfo.InstancePathList)
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{
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// 复制文件到相应的文件夹
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string destinationPath = Path.Combine(studyDicomFolderPath, Path.GetFileName(instanceInfo.Path));
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//加入到下载任务里
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downloadJobs.Add(() => _oSSService.DownLoadFromOSSAsync(instanceInfo.Path, destinationPath));
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//下载到当前目录
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//await _oSSService.DownLoadFromOSSAsync(instanceInfo.Path, destinationPath);
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}
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}
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}
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foreach (var noneDicomStudy in visitItem.NoneDicomStudyList)
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{
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string studyNoneDicomFolderPath = Path.Combine(siteFolderPath, $"{visitItem.SubjectCode}_{visitItem.VisitName}_Non-DICOM", $"{noneDicomStudy.StudyCode}_{noneDicomStudy.ImageDate.ToString("yyyy-MM-dd")}_{noneDicomStudy.Modality}");
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Directory.CreateDirectory(studyNoneDicomFolderPath);
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foreach (var file in noneDicomStudy.FileList)
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{
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string destinationPath = Path.Combine(studyNoneDicomFolderPath, Path.GetFileName(file.FileName));
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//加入到下载任务里
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downloadJobs.Add(() => _oSSService.DownLoadFromOSSAsync(HttpUtility.UrlDecode(file.Path), destinationPath));
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//下载到当前目录
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//await _oSSService.DownLoadFromOSSAsync(HttpUtility.UrlDecode(file.Path), destinationPath);
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}
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}
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}
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#region 异步方式处理
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int totalCount = downloadJobs.Count;
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int downloadedCount = 0;
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foreach (var job in downloadJobs)
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{
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try
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{
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await job();
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}
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catch (Exception ex)
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{
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Console.WriteLine($"下载失败: {ex.Message}");
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}
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downloadedCount++;
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// 每处理50个，输出一次进度（或最后一个时也输出）
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if (downloadedCount % 50 == 0 || downloadedCount == totalCount)
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{
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Console.WriteLine($"已下载 {downloadedCount} / {totalCount} 个文件，完成 {(downloadedCount * 100.0 / totalCount):F2}%");
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}
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}
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#endregion
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#region 多线程测试
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//const int batchSize = 15;
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//int totalCount = downloadJobs.Count;
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//int downloadedCount = 0;
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//for (int i = 0; i < downloadJobs.Count; i += batchSize)
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//{
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// var batch = downloadJobs.Skip(i).Take(batchSize).Select(job => job());
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// await Task.WhenAll(batch);
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// downloadedCount += batch.Count();
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// Console.WriteLine($"已下载 {downloadedCount} / {totalCount} 个文件，完成 {(downloadedCount * 100.0 / totalCount):F2}%");
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//}
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#endregion
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}
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return ResponseOutput.Ok();
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}
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/// <summary>
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/// 下载影像 维护dir信息 并回传到OSS
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/// </summary>
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/// <param name="trialId"></param>
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/// <returns></returns>
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[HttpGet]
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[AllowAnonymous]
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public async Task<IResponseOutput> DownloadAndUploadTrialData(Guid trialId,
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[FromServices] IRepository<DicomInstance> _instanceRepository,
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[FromServices] IRepository<DicomStudy> _studyRepository,
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[FromServices] IRepository<DicomSeries> _seriesRepository)
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{
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var list = await _instanceRepository.Where(t => t.TrialId == trialId && t.SubjectVisitId == Guid.Parse("01000000-0a00-0242-bd20-08dcce543ded") && t.DicomStudy.ModalityForEdit == "IVUS")
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.Select(t => new { t.SeriesId, t.StudyId, t.Id, t.Path }).ToListAsync();
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int totalCount = list.Count;
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int dealCount = 0;
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foreach (var item in list)
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{
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var stream = await _oSSService.GetStreamFromOSSAsync(item.Path);
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var dicomFile = DicomFile.Open(stream);
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// 获取 Pixel Data 标签
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var pixelData = DicomPixelData.Create(dicomFile.Dataset);
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//获取像素是否为封装形式
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var syntax = dicomFile.Dataset.InternalTransferSyntax;
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//对于封装像素的文件做转换
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if (syntax.IsEncapsulated)
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{
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// 创建一个新的片段序列
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var newFragments = new DicomOtherByteFragment(DicomTag.PixelData);
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// 获取每帧数据并封装为单独的片段
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for (int n = 0; n < pixelData.NumberOfFrames; n++)
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{
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var frameData = pixelData.GetFrame(n);
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newFragments.Fragments.Add(new MemoryByteBuffer(frameData.Data));
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}
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// 替换原有的片段序列
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dicomFile.Dataset.AddOrUpdate(newFragments);
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}
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#region 获取dir信息 维护数据库三个表数据
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var dirInfo = DicomDIRHelper.ReadDicomDIRInfo(dicomFile);
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await _instanceRepository.BatchUpdateNoTrackingAsync(t => t.Id == item.Id,
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u => new DicomInstance()
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{
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IsEncapsulated = syntax.IsEncapsulated,
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TransferSytaxUID = dirInfo.TransferSytaxUID,
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SOPClassUID = dirInfo.SOPClassUID,
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MediaStorageSOPClassUID = dirInfo.MediaStorageSOPClassUID,
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MediaStorageSOPInstanceUID = dirInfo.MediaStorageSOPInstanceUID
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}, false);
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await _seriesRepository.BatchUpdateNoTrackingAsync(t => t.Id == item.SeriesId,
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u => new DicomSeries()
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{
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DicomSeriesDate = dirInfo.DicomSeriesDate,
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DicomSeriesTime = dirInfo.DicomSeriesTime,
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}, false);
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await _studyRepository.BatchUpdateNoTrackingAsync(t => t.Id == item.StudyId,
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u => new DicomStudy()
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{
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DicomStudyDate = dirInfo.DicomStudyDate,
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DicomStudyTime = dirInfo.DicomStudyTime
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}, false);
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#endregion
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//保存到内存流
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using var memoryStream = new MemoryStream();
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dicomFile.Save(memoryStream);
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memoryStream.Position = 0;
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//获取原始目录 和文件名
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var folder = item.Path.Substring(0, item.Path.LastIndexOf('/')).TrimStart('/');
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var fileName = Path.GetFileName(item.Path);
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//dicomFile.Save($"download_{Guid.NewGuid()}");
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await _oSSService.UploadToOSSAsync(memoryStream, folder, fileName, false);
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dealCount++;
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Console.WriteLine($"{DateTime.Now}已下载 {dealCount} / {totalCount} 个文件，完成 {(dealCount * 100.0 / totalCount):F2}%");
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}
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return ResponseOutput.Ok();
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}
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/// <summary>
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/// 维护dir 需求新增的字段
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/// </summary>
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/// <param name="trialId"></param>
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/// <param name="_instanceRepository"></param>
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/// <param name="_studyRepository"></param>
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/// <param name="_seriesRepository"></param>
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/// <returns></returns>
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public async Task<IResponseOutput> TrialImageAddExtralField(Guid trialId,
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[FromServices] IRepository<DicomInstance> _instanceRepository,
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[FromServices] IRepository<DicomStudy> _studyRepository,
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[FromServices] IRepository<DicomSeries> _seriesRepository)
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{
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// UPDATE DicomStudy
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//SET DicomStudyDate = CONVERT(char(8), StudyTime, 112), --yyyyMMdd
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// DicomStudyTime = REPLACE(CONVERT(char(8), StudyTime, 108), ':', ''); --HHmmss
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// where DicomStudyDate = ''
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//instance 找到传输语法为空的，然后分组
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var seriesList = _instanceRepository.Where(t => t.TrialId == trialId && t.TransferSytaxUID == "")
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//按照序列 和 NumberOfFrames 分组
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.GroupBy(t => new { t.NumberOfFrames, t.SeriesId })
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// 每个分组 取数据最小的一条
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.Select(g => new { g.Key.SeriesId, g.Key.NumberOfFrames, g.OrderBy(t => t.FileSize).First().Path }).ToList();
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foreach (var item in seriesList)
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{
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var stream = await _oSSService.GetStreamFromOSSAsync(item.Path);
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var dicomFile = DicomFile.Open(stream);
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var pixelData = DicomPixelData.Create(dicomFile.Dataset);
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//获取像素是否为封装形式
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var syntax = dicomFile.Dataset.InternalTransferSyntax;
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//读取需要维护的值
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var transferSyntaxUID = dicomFile.FileMetaInfo.GetSingleValueOrDefault(DicomTag.TransferSyntaxUID, string.Empty);
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var mediaStorageSOPClassUID = dicomFile.FileMetaInfo.GetSingleValueOrDefault(DicomTag.MediaStorageSOPClassUID, string.Empty);
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var mediaStorageSOPInstanceUID = dicomFile.FileMetaInfo.GetSingleValueOrDefault(DicomTag.MediaStorageSOPInstanceUID, string.Empty);
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var sOPClassUID = dicomFile.Dataset.GetSingleValueOrDefault(DicomTag.SOPClassUID, string.Empty);
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//维护序列层级四个字段 后再用sql 维护study series 时间拆分 和 MediaStorageSOPInstanceUID
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await _instanceRepository.BatchUpdateNoTrackingAsync(t => t.SeriesId == item.SeriesId, t => new DicomInstance()
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{
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IsEncapsulated = syntax.IsEncapsulated,
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TransferSytaxUID = transferSyntaxUID,
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MediaStorageSOPClassUID = mediaStorageSOPClassUID,
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SOPClassUID = sOPClassUID,
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});
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}
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return ResponseOutput.Ok();
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}
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/// <summary>
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/// 下载已经删除的影像
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/// </summary>
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/// <param name="trialId"></param>
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/// <returns></returns>
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[HttpPost]
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[AllowAnonymous]
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public async Task<IResponseOutput> DownloadDeleteTrialImage(Guid trialId)
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{
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trialId = Guid.Parse("01000000-ac13-0242-6397-08dcd2d2a091");
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var downloadInfo = _trialRepository.Where(t => t.Id == trialId, ignoreQueryFilters: true).Select(t => new
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{
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t.ResearchProgramNo,
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VisitList = t.SubjectVisitList
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.Select(sv => new
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{
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TrialSiteCode = sv.TrialSite.TrialSiteCode,
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SubjectCode = sv.Subject.Code,
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VisitName = sv.VisitName,
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StudyList = sv.StudyList.Select(u => new
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{
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u.PatientId,
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u.StudyTime,
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u.StudyCode,
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SeriesList = u.SeriesList.Select(z => new
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{
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z.Modality,
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z.SeriesNumber,
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InstancePathList = z.DicomInstanceList.Where(t => t.IsDeleted == true || t.DicomSerie.IsDeleted == true || t.IsReading == false || t.DicomSerie.IsReading == false).Select(k => new
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{
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k.Path,
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k.FileSize
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}).ToList()
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})
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}).ToList()
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}).ToList()
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}).FirstOrDefault();
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var filesizes = downloadInfo.VisitList.SelectMany(t => t.StudyList).SelectMany(t => t.SeriesList).SelectMany(t => t.InstancePathList).Sum(t => t.FileSize);
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var count2 = downloadInfo.VisitList.SelectMany(t => t.StudyList).SelectMany(t => t.SeriesList).SelectMany(t => t.InstancePathList).Count();
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Console.WriteLine($"下载总数量：{count2},总大小{filesizes}");
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if (downloadInfo != null)
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{
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var downloadJobs = new List<(string Path, Func<Task> Job)>();
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var rootFolder = @"E:\DownloadImage";
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//var rootFolder = FileStoreHelper.GetDonwnloadImageFolder(_hostEnvironment);
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// 获取无效字符（系统定义的）
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string invalidChars = new string(Path.GetInvalidFileNameChars()) + new string(Path.GetInvalidPathChars());
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// 用正则表达式替换所有非法字符为下划线或空字符
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string pattern = $"[{Regex.Escape(invalidChars)}]";
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var regexNo = Regex.Replace(downloadInfo.ResearchProgramNo, pattern, "_");
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// 创建一个临时文件夹来存放文件
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string trialFolderPath = Path.Combine(rootFolder, $"{regexNo}_{NewId.NextGuid()}");
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Directory.CreateDirectory(trialFolderPath);
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foreach (var visitItem in downloadInfo.VisitList)
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{
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if (visitItem.StudyList.Count() == 0)
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{
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continue;
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}
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#region 处理 中心，受试者dicom non-dicom 文件夹层级
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//var siteFolderPath = Path.Combine(trialFolderPath, visitItem.TrialSiteCode);
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//if (!Directory.Exists(siteFolderPath))
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//{
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// Directory.CreateDirectory(siteFolderPath);
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//}
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#endregion
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|
||
|
||
foreach (var studyInfo in visitItem.StudyList)
|
||
{
|
||
// 遍历 Series
|
||
foreach (var seriesInfo in studyInfo.SeriesList)
|
||
{
|
||
string studyDicomFolderPath = Path.Combine(trialFolderPath, $"{visitItem.SubjectCode}_{visitItem.VisitName}", $"{studyInfo.StudyCode}_{studyInfo.StudyTime?.ToString("yyyy-MM-dd")}", $"{seriesInfo.SeriesNumber}");
|
||
|
||
// 创建 影像 文件夹
|
||
Directory.CreateDirectory(studyDicomFolderPath);
|
||
|
||
// 遍历 InstancePathList
|
||
foreach (var instanceInfo in seriesInfo.InstancePathList)
|
||
{
|
||
// 复制文件到相应的文件夹
|
||
string destinationPath = Path.Combine(studyDicomFolderPath, Path.GetFileName(instanceInfo.Path));
|
||
|
||
|
||
//加入到下载任务里
|
||
downloadJobs.Add((instanceInfo.Path, () => _oSSService.DownLoadFromOSSAsync(instanceInfo.Path, destinationPath)));
|
||
|
||
//下载到当前目录
|
||
//await _oSSService.DownLoadFromOSSAsync(instanceInfo.Path, destinationPath);
|
||
}
|
||
}
|
||
|
||
|
||
}
|
||
}
|
||
|
||
#region 异步方式处理
|
||
|
||
int totalCount = downloadJobs.Count;
|
||
int downloadedCount = 0;
|
||
|
||
// 在 trialFolderPath 下面放一个失败记录文件
|
||
string failedLogPath = Path.Combine(trialFolderPath, "failed_downloads.txt");
|
||
|
||
// 确保文件存在（如果之前有就清空）
|
||
File.WriteAllText(failedLogPath, "");
|
||
|
||
foreach (var job in downloadJobs)
|
||
{
|
||
try
|
||
{
|
||
await job.Job();
|
||
}
|
||
catch (Exception ex)
|
||
{
|
||
|
||
|
||
string errorMessage = $"[{DateTime.Now:yyyy-MM-dd HH:mm:ss}] 下载失败: {job.Path}, 错误: {ex.Message}\r\n";
|
||
|
||
Console.WriteLine(errorMessage);
|
||
|
||
await File.AppendAllTextAsync(failedLogPath, errorMessage);
|
||
}
|
||
|
||
downloadedCount++;
|
||
|
||
// 每处理50个，输出一次进度（或最后一个时也输出）
|
||
if (downloadedCount % 50 == 0 || downloadedCount == totalCount)
|
||
{
|
||
Console.WriteLine($"已下载 {downloadedCount} / {totalCount} 个文件，完成 {(downloadedCount * 100.0 / totalCount):F2}%");
|
||
}
|
||
}
|
||
#endregion
|
||
|
||
#region 多线程测试
|
||
|
||
//const int batchSize = 15;
|
||
//int totalCount = downloadJobs.Count;
|
||
//int downloadedCount = 0;
|
||
|
||
//for (int i = 0; i < downloadJobs.Count; i += batchSize)
|
||
//{
|
||
// var batch = downloadJobs.Skip(i).Take(batchSize).Select(job => job());
|
||
|
||
// await Task.WhenAll(batch);
|
||
|
||
// downloadedCount += batch.Count();
|
||
|
||
// Console.WriteLine($"已下载 {downloadedCount} / {totalCount} 个文件，完成 {(downloadedCount * 100.0 / totalCount):F2}%");
|
||
//}
|
||
#endregion
|
||
|
||
}
|
||
|
||
return ResponseOutput.Ok();
|
||
|
||
|
||
}
|
||
|
||
|
||
[AllowAnonymous]
|
||
public async Task<IResponseOutput> ReadDicomDataWriteDB([FromServices] IRepository<DicomInstance> _instanceRepository)
|
||
{
|
||
var testPath = @"E:\WXT001";
|
||
var path = @"E:\WXT001";
|
||
|
||
var files = Directory.GetFiles(testPath, "*", SearchOption.AllDirectories)
|
||
// 只要没有后缀（Windows 显示类型是 .file）
|
||
.Where(f => string.IsNullOrEmpty(Path.GetExtension(f)))
|
||
.Where(f => Guid.TryParse(Path.GetFileNameWithoutExtension(f), out _))
|
||
.ToList();
|
||
|
||
Console.WriteLine($"找到 {files.Count} 个 DICOM 文件");
|
||
|
||
int total = files.Count;
|
||
int processed = 0;
|
||
double lastPercent = 0;
|
||
|
||
var options = new ParallelOptions { MaxDegreeOfParallelism = 12 };
|
||
|
||
// 输出文件路径
|
||
var outputFile = Path.Combine(@"D:\dicomWrite", $"{Guid.NewGuid()}_dicom_info.txt");
|
||
|
||
var outputErrorFile = Path.Combine(@"D:\dicomWrite", $"{Guid.NewGuid()}_dicom_info_error.txt");
|
||
|
||
// 用并发安全的写法（锁保护）
|
||
var fileLock = new object();
|
||
|
||
foreach (var file in files)
|
||
{
|
||
try
|
||
{
|
||
var id = Guid.Parse(Path.GetFileNameWithoutExtension(file));
|
||
var dicomFile = DicomFile.Open(file);
|
||
|
||
var dataset = dicomFile.Dataset;
|
||
var fileMeta = dicomFile.FileMetaInfo;
|
||
var syntax = dataset.InternalTransferSyntax;
|
||
|
||
|
||
|
||
//单位 设备 PatientId Visit 检查UId 帧数
|
||
|
||
var stationName = dataset.GetSingleValueOrDefault(DicomTag.StationName, string.Empty);
|
||
|
||
var institutionName = dataset.GetSingleValueOrDefault(DicomTag.InstitutionName, string.Empty);
|
||
|
||
var manufacturer = dataset.GetSingleValueOrDefault(DicomTag.Manufacturer, string.Empty);
|
||
|
||
//PatientID TrialCode_SubjectCode
|
||
//var patientID = dataset.GetSingleValueOrDefault(DicomTag.PatientID, string.Empty);
|
||
|
||
//SubjectCode
|
||
var clinicalTrialSubjectID = dataset.GetSingleValueOrDefault(DicomTag.ClinicalTrialSubjectID, string.Empty);
|
||
//访视visitNum
|
||
var clinicalTrialTimePointID = dataset.GetSingleValueOrDefault(DicomTag.ClinicalTrialTimePointID, string.Empty);
|
||
var studyInstanceUID = dataset.GetSingleValueOrDefault(DicomTag.StudyInstanceUID, string.Empty);
|
||
var seriesInstanceUID = dataset.GetSingleValueOrDefault(DicomTag.SeriesInstanceUID, string.Empty);
|
||
var sOPInstanceUID = dataset.GetSingleValueOrDefault(DicomTag.SOPInstanceUID, string.Empty);
|
||
|
||
var numberOfFrames = dataset.GetSingleValueOrDefault(DicomTag.NumberOfFrames, 1);
|
||
|
||
|
||
// 传输语法
|
||
var transferSyntaxUID = fileMeta.GetSingleValueOrDefault(DicomTag.TransferSyntaxUID, string.Empty);
|
||
var sOPClassUID = dataset.GetSingleValueOrDefault(DicomTag.SOPClassUID, string.Empty);
|
||
var mediaStorageSOPClassUID = fileMeta.GetSingleValueOrDefault(DicomTag.MediaStorageSOPClassUID, string.Empty);
|
||
|
||
var mediaStorageSOPInstanceUID = fileMeta.GetSingleValueOrDefault(DicomTag.MediaStorageSOPInstanceUID, string.Empty);
|
||
|
||
|
||
// 拼接一行 CSV 格式
|
||
var line = string.Join(",",
|
||
id,
|
||
stationName,
|
||
institutionName,
|
||
manufacturer,
|
||
clinicalTrialSubjectID,
|
||
clinicalTrialTimePointID,
|
||
studyInstanceUID,
|
||
seriesInstanceUID,
|
||
sOPInstanceUID,
|
||
numberOfFrames,
|
||
transferSyntaxUID,
|
||
sOPClassUID,
|
||
mediaStorageSOPClassUID,
|
||
mediaStorageSOPInstanceUID
|
||
|
||
);
|
||
|
||
|
||
await File.AppendAllTextAsync(outputFile, line + Environment.NewLine);
|
||
|
||
await _instanceRepository.BatchUpdateNoTrackingAsync(
|
||
t => t.Id == id,
|
||
t => new DicomInstance
|
||
{
|
||
IsEncapsulated = syntax.IsEncapsulated,
|
||
TransferSytaxUID = transferSyntaxUID,
|
||
MediaStorageSOPClassUID = mediaStorageSOPClassUID,
|
||
SOPClassUID = sOPClassUID,
|
||
MediaStorageSOPInstanceUID = mediaStorageSOPInstanceUID
|
||
}, false);
|
||
}
|
||
catch (Exception ex)
|
||
{
|
||
var errorMsg = $"{DateTime.Now}❌ {file} 解析失败: {ex.Message}";
|
||
Console.WriteLine(errorMsg);
|
||
|
||
await File.AppendAllTextAsync(outputErrorFile, errorMsg + Environment.NewLine);
|
||
}
|
||
finally
|
||
{
|
||
var done = Interlocked.Increment(ref processed);
|
||
double percent = done * 100.0 / total;
|
||
|
||
// 只在进度提升 >= 1% 时打印
|
||
if (percent - lastPercent >= 5.0 || done == total)
|
||
{
|
||
lastPercent = percent;
|
||
Console.WriteLine($"{DateTime.Now} 进度: {done}/{total} ({percent:F2}%)");
|
||
}
|
||
}
|
||
|
||
}
|
||
|
||
|
||
|
||
|
||
|
||
|
||
return ResponseOutput.Ok();
|
||
}
|
||
|
||
#region 维护已经下载本地的数据
|
||
|
||
[AllowAnonymous]
|
||
public async Task<IResponseOutput> ReadExcelData([FromServices] IRepository<DicomInstance> _instanceRepository)
|
||
{
|
||
var rows = await MiniExcel.QueryAsync<DicomSOPInfo>(@"C:\Users\hang\Desktop\维护数据读取.xlsx");
|
||
|
||
rows = rows.Where(t => !string.IsNullOrEmpty(t.InstanceId.ToString())).ToList();
|
||
|
||
var outputErrorFile = Path.Combine(@"D:\dicomWrite", $"{Guid.NewGuid()}_dicom_info_error.txt");
|
||
|
||
foreach (var item in rows)
|
||
{
|
||
|
||
|
||
try
|
||
{
|
||
await _instanceRepository.BatchUpdateNoTrackingAsync(
|
||
t => t.Id == item.InstanceId,
|
||
t => new DicomInstance
|
||
{
|
||
IsEncapsulated = item.IsEncapsulated,
|
||
TransferSytaxUID = item.TransferSyntaxUID,
|
||
MediaStorageSOPClassUID = item.MediaStorageSOPClassUID,
|
||
SOPClassUID = item.SOPClassUID,
|
||
MediaStorageSOPInstanceUID = item.MediaStorageSOPInstanceUID
|
||
}, false);
|
||
}
|
||
catch (Exception ex)
|
||
{
|
||
|
||
var errorMsg = $"{item.InstanceId} {DateTime.Now} 更新失败: {ex.Message}";
|
||
Console.WriteLine(errorMsg);
|
||
|
||
await File.AppendAllTextAsync(outputErrorFile, errorMsg + Environment.NewLine);
|
||
}
|
||
|
||
|
||
}
|
||
|
||
|
||
|
||
|
||
return ResponseOutput.Ok();
|
||
}
|
||
|
||
public class DicomSOPInfo
|
||
{
|
||
public Guid InstanceId { get; set; }
|
||
|
||
|
||
public string TransferSyntaxUID { get; set; }
|
||
|
||
public string SOPClassUID { get; set; }
|
||
|
||
public string MediaStorageSOPClassUID { get; set; }
|
||
|
||
public string MediaStorageSOPInstanceUID { get; set; }
|
||
|
||
public bool IsEncapsulated => DicomTransferSyntax.Lookup(DicomUID.Parse(TransferSyntaxUID)).IsEncapsulated;
|
||
|
||
|
||
|
||
}
|
||
|
||
#endregion
|
||
|
||
|
||
#region 通过Excel 读取未下载的，边下载边维护数据
|
||
|
||
[AllowAnonymous]
|
||
public async Task<IResponseOutput> WriteNeedDealData([FromServices] IRepository<DicomInstance> _instanceRepository)
|
||
{
|
||
|
||
#region 获取差集数据
|
||
//var rows = await MiniExcel.QueryAsync<DicomSOPInfo>(@"C:\Users\hang\Desktop\维护数据读取.xlsx");
|
||
|
||
//rows = rows.Where(t => !string.IsNullOrEmpty(t.InstanceId.ToString())).ToList();
|
||
|
||
//var allRows = await MiniExcel.QueryAsync<NeedDealInstanceInfo>(@"C:\Users\hang\Desktop\AllData.xlsx");
|
||
|
||
//allRows = allRows.Where(t => !string.IsNullOrEmpty(t.InstanceId.ToString())).ToList();
|
||
|
||
//var needDealRows = allRows.Where(t => !rows.Select(c => c.InstanceId).Contains(t.InstanceId)).ToList();
|
||
|
||
//var outputFile = Path.Combine(@"D:\dicomWrite", $"{Guid.NewGuid()}_dicom_info.txt");
|
||
|
||
//foreach (var item in needDealRows)
|
||
//{
|
||
// var line = string.Join(",", item.InstanceId, item.Path);
|
||
|
||
// await File.AppendAllTextAsync(outputFile, line + Environment.NewLine);
|
||
//}
|
||
|
||
#endregion
|
||
|
||
var folder = FileStoreHelper.GetIRaCISRootDataFolder(_hostEnvironment);
|
||
|
||
var needDealRows = await MiniExcel.QueryAsync<NeedDealInstanceInfo>(Path.Combine(folder, "needDownload.xlsx"));
|
||
|
||
needDealRows = needDealRows.Where(t => !string.IsNullOrEmpty(t.InstanceId.ToString())).ToList();
|
||
|
||
|
||
|
||
var outputFile = Path.Combine(folder, $"{Guid.NewGuid()}_dicom_info.txt");
|
||
|
||
var outputErrorFile = Path.Combine(folder, $"{Guid.NewGuid()}_dicom_info_error.txt");
|
||
|
||
int total = needDealRows.Count();
|
||
|
||
Console.WriteLine($"需要处理数量{total}");
|
||
|
||
int processed = 0;
|
||
double lastPercent = 0;
|
||
|
||
foreach (var item in needDealRows)
|
||
{
|
||
|
||
try
|
||
{
|
||
await using var stream = await _oSSService.GetStreamFromOSSAsync(item.Path);
|
||
|
||
var dicomFile = DicomFile.Open(stream);
|
||
|
||
var dataset = dicomFile.Dataset;
|
||
var fileMeta = dicomFile.FileMetaInfo;
|
||
|
||
var pixelData = DicomPixelData.Create(dicomFile.Dataset);
|
||
|
||
//获取像素是否为封装形式
|
||
var syntax = dicomFile.Dataset.InternalTransferSyntax;
|
||
|
||
var stationName = dataset.GetSingleValueOrDefault(DicomTag.StationName, string.Empty);
|
||
|
||
var institutionName = dataset.GetSingleValueOrDefault(DicomTag.InstitutionName, string.Empty);
|
||
|
||
var manufacturer = dataset.GetSingleValueOrDefault(DicomTag.Manufacturer, string.Empty);
|
||
|
||
//PatientID TrialCode_SubjectCode
|
||
//var patientID = dataset.GetSingleValueOrDefault(DicomTag.PatientID, string.Empty);
|
||
|
||
//SubjectCode
|
||
var clinicalTrialSubjectID = dataset.GetSingleValueOrDefault(DicomTag.ClinicalTrialSubjectID, string.Empty);
|
||
//访视visitNum
|
||
var clinicalTrialTimePointID = dataset.GetSingleValueOrDefault(DicomTag.ClinicalTrialTimePointID, string.Empty);
|
||
var studyInstanceUID = dataset.GetSingleValueOrDefault(DicomTag.StudyInstanceUID, string.Empty);
|
||
var seriesInstanceUID = dataset.GetSingleValueOrDefault(DicomTag.SeriesInstanceUID, string.Empty);
|
||
var sOPInstanceUID = dataset.GetSingleValueOrDefault(DicomTag.SOPInstanceUID, string.Empty);
|
||
|
||
var numberOfFrames = dataset.GetSingleValueOrDefault(DicomTag.NumberOfFrames, 1);
|
||
|
||
|
||
// 传输语法
|
||
var transferSyntaxUID = fileMeta.GetSingleValueOrDefault(DicomTag.TransferSyntaxUID, string.Empty);
|
||
var sOPClassUID = dataset.GetSingleValueOrDefault(DicomTag.SOPClassUID, string.Empty);
|
||
var mediaStorageSOPClassUID = fileMeta.GetSingleValueOrDefault(DicomTag.MediaStorageSOPClassUID, string.Empty);
|
||
|
||
var mediaStorageSOPInstanceUID = fileMeta.GetSingleValueOrDefault(DicomTag.MediaStorageSOPInstanceUID, string.Empty);
|
||
|
||
|
||
var line = string.Join(",",
|
||
item.InstanceId,
|
||
stationName,
|
||
institutionName,
|
||
manufacturer,
|
||
clinicalTrialSubjectID,
|
||
clinicalTrialTimePointID,
|
||
studyInstanceUID,
|
||
seriesInstanceUID,
|
||
sOPInstanceUID,
|
||
numberOfFrames,
|
||
transferSyntaxUID,
|
||
sOPClassUID,
|
||
mediaStorageSOPClassUID,
|
||
mediaStorageSOPInstanceUID
|
||
|
||
);
|
||
|
||
|
||
await File.AppendAllTextAsync(outputFile, line + Environment.NewLine);
|
||
|
||
//维护序列层级四个字段 后再用sql 维护study series 时间拆分 和 MediaStorageSOPInstanceUID
|
||
await _instanceRepository.BatchUpdateNoTrackingAsync(
|
||
t => t.Id == item.InstanceId,
|
||
t => new DicomInstance
|
||
{
|
||
IsEncapsulated = syntax.IsEncapsulated,
|
||
TransferSytaxUID = transferSyntaxUID,
|
||
MediaStorageSOPClassUID = mediaStorageSOPClassUID,
|
||
SOPClassUID = sOPClassUID,
|
||
MediaStorageSOPInstanceUID = mediaStorageSOPInstanceUID
|
||
}, false);
|
||
}
|
||
catch (Exception ex)
|
||
{
|
||
|
||
var errorMsg = $"{DateTime.Now}❌ 失败: {ex.Message}";
|
||
Console.WriteLine(errorMsg);
|
||
|
||
await File.AppendAllTextAsync(outputErrorFile, errorMsg + Environment.NewLine);
|
||
}
|
||
finally
|
||
{
|
||
processed++;
|
||
double percent = processed * 100.0 / total;
|
||
|
||
// 每提升 5% 或完成时输出
|
||
if (percent - lastPercent >= 5.0 || processed == total)
|
||
{
|
||
lastPercent = percent;
|
||
Console.WriteLine($"{DateTime.Now} 进度: {processed}/{total} ({percent:F2}%)");
|
||
}
|
||
}
|
||
|
||
|
||
}
|
||
|
||
return ResponseOutput.Ok();
|
||
}
|
||
|
||
public class NeedDealInstanceInfo
|
||
{
|
||
public Guid InstanceId { get; set; }
|
||
|
||
public string Path { get; set; }
|
||
}
|
||
#endregion
|
||
}
|
||
|
||
} |